Rh6AG106400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0012697
Physical Location & Seq
Reverse (-)
15646042 .. 15648010
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG106400.1

Sequence Viewer

Length: 240 bp
ATGCTTGTGAAGACATTTGGGATGGGACCTTCAAACAATTGCCGTTGCAACTGTCTTCTCTGCCGTCTCCGGCTGGTACGGCTTCATGTTTGGAAGAGAATCTGCTCGCCAAGAGCTTGGAAGCTTAATCGAAGACCTTCGCCGCCAGAATCCCAATTCCGATCCACCTCATTCCTGACTTCATTGTGTTCAAGGGATCAGCTGGGCACTGTGGAAATCCCTTCATTTGTTAAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

9.1

Weight (kDa)

10.82

Isoelectric Point (pI)

62.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 143
AclWI GGATC 2 cut(s) 156, 204
AfaI GTAC 1 cut(s) 78
AgsI TTSAA 2 cut(s) 33, 192
AluBI AGCT 3 cut(s) 116, 124, 202
AluI AGCT 3 cut(s) 116, 124, 202
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 2 cut(s) 156, 204
Asp700I GAANNNNTTC 1 cut(s) 136
AspS9I GGNCC 1 cut(s) 26
AvaII GGWCC 1 cut(s) 26
BaeGI GKGCMC 1 cut(s) 209
BbsI GAAGAC 3 cut(s) 17, 47, 139
BccI CCATC 1 cut(s) 16
BceAI ACGGC 3 cut(s) 27, 48, 95
BcoDI GTCTC 1 cut(s) 71
BisI GCNGC 1 cut(s) 143
BlsI GCNGC 1 cut(s) 144
Bme18I GGWCC 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 27
BpiI GAAGAC 3 cut(s) 17, 47, 139
BseGI GGATG 1 cut(s) 27
BseSI GKGCMC 1 cut(s) 209
BseYI CCCAGC 1 cut(s) 202
BsiSI CCGG 1 cut(s) 70
BslFI GGGAC 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 71
BsmBI CGTCTC 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 2 cut(s) 161, 196
BspACI CCGC 1 cut(s) 143
BspLI GGNNCC 1 cut(s) 27
BspPI GGATC 2 cut(s) 156, 204
BssMI GATC 2 cut(s) 161, 196
Bst4CI ACNGT 2 cut(s) 53, 211
Bst6I CTCTTC 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 107
BstF5I GGATG 1 cut(s) 27
BstKTI GATC 2 cut(s) 164, 199
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 2 cut(s) 161, 196
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstSLI GKGCMC 1 cut(s) 209
BstV2I GAAGAC 3 cut(s) 17, 47, 139
BstXI CCANNNNNNTGG 1 cut(s) 117
BtsCI GGATG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 207
Cac8I GCNNGC 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 26
Csp6I GTAC 1 cut(s) 77
CviAII CATG 2 cut(s) 86, 237
CviJI RGCY 5 cut(s) 73, 82, 116, 124, 202
CviKI_1 RGCY 5 cut(s) 73, 82, 116, 124, 202
CviQI GTAC 1 cut(s) 77
DpnI GATC 2 cut(s) 163, 198
DpnII GATC 2 cut(s) 161, 196
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 26
EcoO109I RGGNCCY 1 cut(s) 26
Esp3I CGTCTC 1 cut(s) 71
FaeI CATG 2 cut(s) 89, 240
FaiI YATR 2 cut(s) 87, 238
FaqI GGGAC 1 cut(s) 39
FatI CATG 2 cut(s) 85, 236
Fnu4HI GCNGC 1 cut(s) 143
FokI GGATG 1 cut(s) 34
Fsp4HI GCNGC 1 cut(s) 143
GluI GCNGC 1 cut(s) 143
GsaI CCCAGC 1 cut(s) 206
HapII CCGG 1 cut(s) 70
Hin1II CATG 2 cut(s) 89, 240
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 2 cut(s) 99, 149
HpaII CCGG 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 161
Hpy188III TCNNGA 1 cut(s) 175
HpyAV CCTTC 3 cut(s) 39, 147, 231
HpyCH4III ACNGT 2 cut(s) 53, 211
HpyCH4V TGCA 1 cut(s) 48
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
Hsp92II CATG 2 cut(s) 89, 240
Kzo9I GATC 2 cut(s) 161, 196
LpnPI CCDG 5 cut(s) 59, 83, 159, 188, 188
MalI GATC 2 cut(s) 163, 198
MboI GATC 2 cut(s) 161, 196
MboII GAAGA 4 cut(s) 22, 47, 106, 144
MfeI CAATTG 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 2 cut(s) 37, 155
MnlI CCTC 1 cut(s) 178
MroXI GAANNNNTTC 1 cut(s) 136
MseI TTAA 2 cut(s) 126, 231
MspA1I CMGCKG 1 cut(s) 202
MspI CCGG 1 cut(s) 70
MunI CAATTG 1 cut(s) 37
MwoI GCNNNNNNNGC 1 cut(s) 79
NdeII GATC 2 cut(s) 161, 196
NlaIII CATG 2 cut(s) 89, 240
NlaIV GGNNCC 1 cut(s) 27
PdmI GAANNNNTTC 1 cut(s) 136
PfeI GAWTC 2 cut(s) 99, 149
PkrI GCNGC 1 cut(s) 144
PpuMI RGGWCCY 1 cut(s) 26
Psp5II RGGWCCY 1 cut(s) 26
PspFI CCCAGC 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 1 cut(s) 26
PspPPI RGGWCCY 1 cut(s) 26
PvuII CAGCTG 1 cut(s) 202
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
SaqAI TTAA 2 cut(s) 126, 231
SatI GCNGC 1 cut(s) 143
Sau3AI GATC 2 cut(s) 161, 196
Sau96I GGNCC 1 cut(s) 26
SduI GDGCHC 1 cut(s) 209
SetI ASST 6 cut(s) 31, 118, 126, 139, 170, 204
SinI GGWCC 1 cut(s) 26
Sse9I AATT 2 cut(s) 37, 155
SsiI CCGC 1 cut(s) 143
TaaI ACNGT 2 cut(s) 53, 211
TaqI TCGA 1 cut(s) 130
TasI AATT 2 cut(s) 37, 155
TauI GCSGC 1 cut(s) 145
TfiI GAWTC 2 cut(s) 99, 149
Tru1I TTAA 2 cut(s) 126, 231
Tru9I TTAA 2 cut(s) 126, 231
TscAI CASTG 1 cut(s) 214
TspDTI ATGAA 3 cut(s) 74, 171, 213
TspRI CASTG 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 26
XmnI GAANNNNTTC 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.