Rh7AG222000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0012697
Physical Location & Seq
Forward (+)
20729681 .. 20730398
718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG222000.1

Sequence Viewer

Length: 306 bp
ATGGCAGTGGTGCTTACTGTTTGGAGGAGCCGGTTTTTTGCATTAGGATCTACTCTTGAGAACGGAGGTGATGATGGAGGAGAGTCAATAGCCACCTACAGCACTGTGAGAGGTGATCCAAACCATGGCGGCGGTGCTTACTATTTGGAGGAGCCGGTTTGTGCTTGGTTTTGTTCGCAGGTGGACGATGCTATCGTTGGTTGCCTGCCGAAGTGGTTGGTAGGTAGTACGGTGGAAATCGAGGCAGATGCTTTGGCTGCTTGCCGAGGGAAGTCTGGGGCGATTGAAAGTGACCTAGATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

10.7

Weight (kDa)

4.2

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 169
Acc36I ACCTGC 1 cut(s) 169
AccB7I CCANNNNNTGG 1 cut(s) 125
AciI CCGC 2 cut(s) 129, 132
AclWI GGATC 2 cut(s) 55, 110
AfaI GTAC 1 cut(s) 229
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 1 cut(s) 287
AlwI GGATC 2 cut(s) 55, 110
ApeKI GCWGC 1 cut(s) 257
AsuHPI GGTGA 2 cut(s) 80, 125
BbvI GCAGC 1 cut(s) 244
BccI CCATC 1 cut(s) 68
BcgI CGANNNNNNTGC 2 cut(s) 230, 264
BfaI CTAG 1 cut(s) 296
BfmI CTRYAG 1 cut(s) 97
BfuAI ACCTGC 1 cut(s) 169
BisI GCNGC 2 cut(s) 130, 258
BlsI GCNGC 2 cut(s) 131, 259
BmiI GGNNCC 2 cut(s) 29, 153
BmsI GCATC 2 cut(s) 178, 238
BpuEI CTTGAG 1 cut(s) 77
BsaJI CCNNGG 2 cut(s) 124, 265
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse118I RCCGGY 2 cut(s) 30, 154
BseDI CCNNGG 2 cut(s) 124, 265
BseLI CCNNNNNNNGG 1 cut(s) 125
BseRI GAGGAG 3 cut(s) 40, 93, 164
BseXI GCAGC 1 cut(s) 244
BsiSI CCGG 2 cut(s) 31, 155
BslI CCNNNNNNNGG 1 cut(s) 125
Bsp143I GATC 2 cut(s) 47, 115
Bsp19I CCATGG 1 cut(s) 124
BspACI CCGC 2 cut(s) 129, 132
BspLI GGNNCC 2 cut(s) 29, 153
BspMI ACCTGC 1 cut(s) 169
BspPI GGATC 2 cut(s) 55, 110
BsrFI RCCGGY 2 cut(s) 30, 154
BssAI RCCGGY 2 cut(s) 30, 154
BssECI CCNNGG 2 cut(s) 124, 265
BssMI GATC 2 cut(s) 47, 115
BssT1I CCWWGG 1 cut(s) 124
Bst4CI ACNGT 3 cut(s) 19, 106, 232
BstC8I GCNNGC 2 cut(s) 206, 262
BstDSI CCRYGG 1 cut(s) 124
BstKTI GATC 2 cut(s) 50, 118
BstMBI GATC 2 cut(s) 47, 115
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstSFI CTRYAG 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 244
BstX2I RGATCY 1 cut(s) 47
BstYI RGATCY 1 cut(s) 47
BtgI CCRYGG 1 cut(s) 124
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 2 cut(s) 12, 102
BveI ACCTGC 1 cut(s) 169
Cac8I GCNNGC 2 cut(s) 206, 262
Cfr10I RCCGGY 2 cut(s) 30, 154
Csp6I GTAC 1 cut(s) 228
CviAII CATG 1 cut(s) 125
CviJI RGCY 4 cut(s) 30, 92, 154, 257
CviKI_1 RGCY 4 cut(s) 30, 92, 154, 257
CviQI GTAC 1 cut(s) 228
DpnI GATC 2 cut(s) 49, 117
DpnII GATC 2 cut(s) 47, 115
Eco130I CCWWGG 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 124
FaeI CATG 1 cut(s) 128
FaiI YATR 1 cut(s) 126
FatI CATG 1 cut(s) 124
Fnu4HI GCNGC 2 cut(s) 130, 258
Fsp4HI GCNGC 2 cut(s) 130, 258
FspBI CTAG 1 cut(s) 296
GluI GCNGC 2 cut(s) 130, 258
HapII CCGG 2 cut(s) 31, 155
Hin1II CATG 1 cut(s) 128
HinfI GANTC 1 cut(s) 83
HpaII CCGG 2 cut(s) 31, 155
HphI GGTGA 2 cut(s) 80, 125
Hpy166II GTNNAC 1 cut(s) 184
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 1 cut(s) 184
HpyCH4III ACNGT 3 cut(s) 19, 106, 232
HpyCH4V TGCA 1 cut(s) 41
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
Hsp92II CATG 1 cut(s) 128
Kzo9I GATC 2 cut(s) 47, 115
LmnI GCTCC 2 cut(s) 27, 151
LpnPI CCDG 5 cut(s) 44, 164, 168, 218, 261
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 2 cut(s) 178, 238
MaeI CTAG 1 cut(s) 296
MaeIII GTNAC 1 cut(s) 290
MalI GATC 2 cut(s) 49, 117
MboI GATC 2 cut(s) 47, 115
MflI RGATCY 1 cut(s) 47
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 7 cut(s) 18, 59, 71, 104, 142, 235, 260
MspI CCGG 2 cut(s) 31, 155
MwoI GCNNNNNNNGC 1 cut(s) 257
NcoI CCATGG 1 cut(s) 124
NdeII GATC 2 cut(s) 47, 115
NlaIII CATG 1 cut(s) 128
NlaIV GGNNCC 2 cut(s) 29, 153
NmeAIII GCCGAG 1 cut(s) 290
NmuCI GTSAC 1 cut(s) 290
PaqCI CACCTGC 1 cut(s) 169
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PflMI CCANNNNNTGG 1 cut(s) 125
PkrI GCNGC 2 cut(s) 131, 259
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PspN4I GGNNCC 2 cut(s) 29, 153
PsuI RGATCY 1 cut(s) 47
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
SatI GCNGC 2 cut(s) 130, 258
Sau3AI GATC 2 cut(s) 47, 115
SchI GAGTC 1 cut(s) 92
SetI ASST 6 cut(s) 70, 98, 115, 183, 226, 297
SfaNI GCATC 2 cut(s) 178, 238
SfcI CTRYAG 1 cut(s) 97
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
SsiI CCGC 2 cut(s) 129, 132
SspMI CTAG 1 cut(s) 296
StyI CCWWGG 1 cut(s) 124
TaaI ACNGT 3 cut(s) 19, 106, 232
TaqI TCGA 1 cut(s) 240
TauI GCSGC 1 cut(s) 132
TscAI CASTG 2 cut(s) 12, 109
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 290
TspGWI ACGGA 1 cut(s) 78
TspRI CASTG 2 cut(s) 12, 109
Van91I CCANNNNNTGG 1 cut(s) 125
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.