Rh7CG234600
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0012697
Physical Location & Seq
Forward (+)
21927902 .. 21930785
2884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG234600.1

Sequence Viewer

Length: 504 bp
ATGGTGGTTACTGATTGGGTGTGGTTTGTTGGTCTTGATGTGTGCTCCTTAACTCTGGTATTAGACCGTGCCTCGAAATCTCTACCTTCACTAAGAAGCATACCAGAACTGTACAAAGAGAAAGAGCAGAATTTGAAGGCTTTCTCATTCCAAGAGCTCAGGGATTCAACCAATGGCTTCAGCAGGTTGCAAAAGCTTGGTGAAGGAGGCTTTCGGAGTGTGTATAAAGGAAAAATCATGCCCAAAAATGGCCAGGGTAGTCCAATTTTGGTCGCCATAAAAAAGTTGAATCCACATAGCTTACAGGTGGTCGATGCTATCGTTGGTTGCCTGCCGAAGTGGTTGGTAGGTAGTACGGAGGAAATCGAGGCAGATGCTTTGGCTGCTGGCAGAGGGAAGTCCGGGGCGATTGAAAGTGACCTGCACAGCGGCCAAAATCAGGGAGATCGAAGACGCCCTCGACCCACCTCCTCCAAACCTGTCGAAACCAGCCACCCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

167

Amino Acids

18.31

Weight (kDa)

9.45

Isoelectric Point (pI)

45.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 174, 429
AciI CCGC 1 cut(s) 429
AcoI YGGCCR 2 cut(s) 250, 430
AcsI RAATTY 1 cut(s) 130
AcuI CTGAAG 1 cut(s) 163
AcyI GRCGYC 1 cut(s) 454
AfaI GTAC 2 cut(s) 113, 355
AfiI CCNNNNNNNGG 2 cut(s) 248, 439
AgsI TTSAA 4 cut(s) 136, 168, 289, 413
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 3 cut(s) 157, 196, 300
AluI AGCT 3 cut(s) 157, 196, 300
Alw21I GWGCWC 2 cut(s) 47, 159
AoxI GGCC 2 cut(s) 250, 430
ApeKI GCWGC 1 cut(s) 383
ApoI RAATTY 1 cut(s) 130
Asp700I GAANNNNTTC 1 cut(s) 140
AsuC2I CCSGG 1 cut(s) 403
AsuHPI GGTGA 1 cut(s) 212
BalI TGGCCA 1 cut(s) 252
BanII GRGCYC 1 cut(s) 159
BbsI GAAGAC 1 cut(s) 457
Bbv12I GWGCWC 2 cut(s) 47, 159
BbvI GCAGC 1 cut(s) 370
BcgI CGANNNNNNTGC 2 cut(s) 356, 390
BciT130I CCWGG 1 cut(s) 254
BcnI CCSGG 1 cut(s) 403
BfuAI ACCTGC 2 cut(s) 174, 429
BisI GCNGC 2 cut(s) 384, 430
BlsI GCNGC 2 cut(s) 385, 431
Bme1390I CCNGG 2 cut(s) 254, 403
BmrFI CCNGG 2 cut(s) 254, 403
BmsI GCATC 2 cut(s) 304, 364
BpiI GAAGAC 1 cut(s) 457
Bpu10I CCTNAGC 1 cut(s) 158
BpuMI CCSGG 1 cut(s) 403
BsaHI GRCGYC 1 cut(s) 454
BsaJI CCNNGG 2 cut(s) 253, 402
Bsc4I CCNNNNNNNGG 2 cut(s) 248, 439
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 2 cut(s) 253, 402
BseLI CCNNNNNNNGG 2 cut(s) 248, 439
BseMII CTCAG 1 cut(s) 172
BseRI GAGGAG 1 cut(s) 460
BseXI GCAGC 1 cut(s) 370
BsgI GTGCAG 1 cut(s) 407
BshFI GGCC 2 cut(s) 252, 432
BsiHKAI GWGCWC 2 cut(s) 47, 159
BsiSI CCGG 1 cut(s) 402
BslI CCNNNNNNNGG 2 cut(s) 248, 439
BsnI GGCC 2 cut(s) 252, 432
Bsp1286I GDGCHC 2 cut(s) 47, 159
Bsp1407I TGTACA 1 cut(s) 111
Bsp143I GATC 1 cut(s) 445
BspACI CCGC 1 cut(s) 429
BspANI GGCC 2 cut(s) 252, 432
BspCNI CTCAG 1 cut(s) 171
BspMI ACCTGC 2 cut(s) 174, 429
BsrGI TGTACA 1 cut(s) 111
BssECI CCNNGG 2 cut(s) 253, 402
BssMI GATC 1 cut(s) 445
BssNI GRCGYC 1 cut(s) 454
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 2 cut(s) 68, 111
BstACI GRCGYC 1 cut(s) 454
BstAUI TGTACA 1 cut(s) 111
BstC8I GCNNGC 2 cut(s) 332, 388
BstDEI CTNAG 2 cut(s) 92, 158
BstKTI GATC 1 cut(s) 448
BstMBI GATC 1 cut(s) 445
BstMWI GCNNNNNNNGC 1 cut(s) 383
BstNI CCWGG 1 cut(s) 254
BstSCI CCNGG 2 cut(s) 252, 401
BstV1I GCAGC 1 cut(s) 370
BstV2I GAAGAC 1 cut(s) 457
BsuRI GGCC 2 cut(s) 252, 432
BveI ACCTGC 2 cut(s) 174, 429
Cac8I GCNNGC 2 cut(s) 332, 388
CseI GACGC 1 cut(s) 462
Csp6I GTAC 2 cut(s) 112, 354
CviAII CATG 1 cut(s) 238
CviQI GTAC 2 cut(s) 112, 354
DdeI CTNAG 2 cut(s) 92, 158
DpnI GATC 1 cut(s) 447
DpnII GATC 1 cut(s) 445
EaeI YGGCCR 2 cut(s) 250, 430
Ecl136II GAGCTC 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 163
EcoICRI GAGCTC 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 252
EcoT38I GRGCYC 1 cut(s) 159
FaeI CATG 1 cut(s) 241
FaiI YATR 5 cut(s) 101, 225, 239, 278, 297
FatI CATG 1 cut(s) 237
Fnu4HI GCNGC 2 cut(s) 384, 430
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 2 cut(s) 384, 430
GluI GCNGC 2 cut(s) 384, 430
HaeIII GGCC 2 cut(s) 252, 432
HapII CCGG 1 cut(s) 402
HgaI GACGC 1 cut(s) 462
Hin1I GRCGYC 1 cut(s) 454
Hin1II CATG 1 cut(s) 241
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 2 cut(s) 164, 289
HpaII CCGG 1 cut(s) 402
HphI GGTGA 1 cut(s) 212
Hpy188I TCNGA 1 cut(s) 216
Hpy188III TCNNGA 1 cut(s) 35
HpyAV CCTTC 3 cut(s) 96, 130, 197
HpyCH4III ACNGT 2 cut(s) 68, 111
HpyCH4V TGCA 2 cut(s) 190, 424
HpyF10VI GCNNNNNNNGC 1 cut(s) 383
HpyF3I CTNAG 2 cut(s) 92, 158
Hsp92I GRCGYC 1 cut(s) 454
Hsp92II CATG 1 cut(s) 241
Kzo9I GATC 1 cut(s) 445
LmnI GCTCC 1 cut(s) 50
Lsp1109I GCAGC 1 cut(s) 370
LweI GCATC 2 cut(s) 304, 364
MaeIII GTNAC 2 cut(s) 7, 416
MalI GATC 1 cut(s) 447
MboI GATC 1 cut(s) 445
MboII GAAGA 1 cut(s) 462
MhlI GDGCHC 2 cut(s) 47, 159
MlsI TGGCCA 1 cut(s) 252
MluCI AATT 2 cut(s) 130, 264
MluNI TGGCCA 1 cut(s) 252
MnlI CCTC 8 cut(s) 82, 200, 352, 361, 386, 468, 478, 481
Mox20I TGGCCA 1 cut(s) 252
MroXI GAANNNNTTC 1 cut(s) 140
MscI TGGCCA 1 cut(s) 252
MseI TTAA 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 252
MspA1I CMGCKG 1 cut(s) 429
MspI CCGG 1 cut(s) 402
MspR9I CCNGG 2 cut(s) 254, 403
MvaI CCWGG 1 cut(s) 254
MwoI GCNNNNNNNGC 1 cut(s) 383
NciI CCSGG 1 cut(s) 403
NdeII GATC 1 cut(s) 445
NlaIII CATG 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 416
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PdmI GAANNNNTTC 1 cut(s) 140
PfeI GAWTC 2 cut(s) 164, 289
PkrI GCNGC 2 cut(s) 385, 431
Psp124BI GAGCTC 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
RsaI GTAC 2 cut(s) 113, 355
RsaNI GTAC 2 cut(s) 112, 354
SacI GAGCTC 1 cut(s) 159
SaqAI TTAA 1 cut(s) 50
SatI GCNGC 2 cut(s) 384, 430
Sau3AI GATC 1 cut(s) 445
ScrFI CCNGG 2 cut(s) 254, 403
SduI GDGCHC 2 cut(s) 47, 159
SfaNI GCATC 2 cut(s) 304, 364
Sse9I AATT 2 cut(s) 130, 264
SsiI CCGC 1 cut(s) 429
SstI GAGCTC 1 cut(s) 159
StyD4I CCNGG 2 cut(s) 252, 401
TaaI ACNGT 2 cut(s) 68, 111
TaqI TCGA 6 cut(s) 74, 312, 366, 448, 460, 483
TasI AATT 2 cut(s) 130, 264
TatI WGTACW 1 cut(s) 111
TauI GCSGC 1 cut(s) 432
TfiI GAWTC 2 cut(s) 164, 289
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 1 cut(s) 383
Tsp45I GTSAC 1 cut(s) 416
TspGWI ACGGA 1 cut(s) 371
XapI RAATTY 1 cut(s) 130
XmnI GAANNNNTTC 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.