Rh7CG239900

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0012697
Physical Location & Seq
Forward (+)
22381760 .. 22405823
24064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG239900.1

Sequence Viewer

Length: 1125 bp
ATGTGCTTAGAAAAAGCTCATATCTTTCTGAAGCAAAAGGGAGATGAATATGACTTTGACAATGCATTTGAGGTTCTTTGCAGTTTCTACAGGGTTAAATCACTTGTTCTGAGCGGGGAGGCTATTAAGGTATTGCTCAGGGAAGGTTCCATGCATCCCTCATTGGATGGTACTACTTACTTGGGTGTGCATATTAAGAGCTTGACTGATGACCTAGTCCCTGCAATGGTCTCTCTTCTGAGAGGAGTGCCTAATCTGAAGACTTTGTACATCAATTCTTACCCTTCCTTGCACATTGTCAAACTGAAAGTACGGCTTCATGTTTGGAAGAGAATCTGCTCGCAAAGAGCTTGGAAGCTTAATCGAAGACCGAAGACCTTCGCCGCCAGAATCCCAATTCCGATCCTCATTCCTGACTTCATTTGGGTTCATGGCATCAGGTTGGCAGTGTGGAAATCCCTTCATTTGTTAAAGCTTGAGAAAACACTTACTGGAAAACTCCTTTGGCCATCTTCGGCTGTTTTCAGACCGTGCCTCGAAATCTCTACCTTCACTAAGAAGCATACCAGAACTGTACAAAGAGAAAGAGCAGAATTTGAAGGCTTTCTCATTCCAAGAGCTCAGGGATTCAACCAATGGCTTCAGCAGGGAGATGATGACTTTGACAATGCATTTGAGGTTCTTTGCAGTTTCTACAGGGTTAAATCACTTGTTCTGACCGGGAGACCGTTAAGGTATTGTTCAGGGAAGGTTCCATGCCTCCCCCATTGGATGGTACTACTTACTTGGGCTTTGTGCATCAATTCTTACTCTTCCTTGAACATTGTTAAACCGAAAGCATGTGGTTTGAAGAGGAAATTCTGGAAATCCCAAAATCTGGATTGTATTCATCAGCTTGAGGAGGTATCAGTAGCACTCTCCATTGGTTATCCTACTAATTTCTTGGAGTTAGCAACATATATTCTTGAGCATGCTCCGAAATTGAAGAAAATGGTCATATGTTATTTACCCCACCAGTTCTATATTATAGAGAGGATAAATAAATGCAAGAAAATTTCCACAGCAACTGTTGTCTTTAAGGAAAGAGGAGTGAATGACGATGGAGCAAAGGGTGAAAGTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

374

Amino Acids

43.06

Weight (kDa)

9.53

Isoelectric Point (pI)

32.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 772, 877
AccBSI CCGCTC 1 cut(s) 114
AciI CCGC 2 cut(s) 114, 384
AclWI GGATC 1 cut(s) 397
AcoI YGGCCR 1 cut(s) 506
AcsI RAATTY 3 cut(s) 593, 857, 1053
AcuI CTGAAG 3 cut(s) 50, 278, 626
AfaI GTAC 5 cut(s) 172, 269, 312, 576, 777
AfiI CCNNNNNNNGG 3 cut(s) 226, 772, 877
AgsI TTSAA 5 cut(s) 599, 631, 820, 850, 985
AjuI GAANNNNNNNTTGG 2 cut(s) 487, 519
AluBI AGCT 7 cut(s) 17, 201, 350, 358, 475, 620, 895
AluI AGCT 7 cut(s) 17, 201, 350, 358, 475, 620, 895
Alw21I GWGCWC 1 cut(s) 622
Alw26I GTCTC 2 cut(s) 235, 718
AlwI GGATC 1 cut(s) 397
AlwNI CAGNNNCTG 1 cut(s) 1067
AoxI GGCC 1 cut(s) 506
ApoI RAATTY 3 cut(s) 593, 857, 1053
ArsI GACNNNNNNTTYG 4 cut(s) 50, 82, 656, 688
Asp700I GAANNNNTTC 2 cut(s) 377, 603
AsuC2I CCSGG 1 cut(s) 721
AsuHPI GGTGA 1 cut(s) 1124
BalI TGGCCA 1 cut(s) 508
BanII GRGCYC 1 cut(s) 622
BarI GAAGNNNNNNTAC 2 cut(s) 251, 283
BbsI GAAGAC 3 cut(s) 266, 373, 380
Bbv12I GWGCWC 1 cut(s) 622
BccI CCATC 4 cut(s) 161, 517, 766, 1094
BceAI ACGGC 1 cut(s) 329
BcnI CCSGG 1 cut(s) 721
BcoDI GTCTC 2 cut(s) 235, 718
BfaI CTAG 1 cut(s) 215
BfmI CTRYAG 2 cut(s) 88, 694
BisI GCNGC 1 cut(s) 384
BlsI GCNGC 1 cut(s) 385
Bme1390I CCNGG 1 cut(s) 721
BmiI GGNNCC 2 cut(s) 148, 753
BmrFI CCNGG 1 cut(s) 721
BmsI GCATC 3 cut(s) 163, 444, 807
BpiI GAAGAC 3 cut(s) 266, 373, 380
Bpu10I CCTNAGC 2 cut(s) 137, 621
BpuEI CTTGAG 3 cut(s) 497, 917, 986
BpuMI CCSGG 1 cut(s) 721
BsaI GGTCTC 2 cut(s) 235, 718
Bsc4I CCNNNNNNNGG 3 cut(s) 226, 772, 877
Bse1I ACTGG 2 cut(s) 496, 1015
Bse3DI GCAATG 1 cut(s) 231
BseGI GGATG 3 cut(s) 154, 172, 777
BseLI CCNNNNNNNGG 3 cut(s) 226, 772, 877
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 4 cut(s) 101, 151, 230, 635
BseNI ACTGG 2 cut(s) 496, 1015
BseRI GAGGAG 3 cut(s) 258, 914, 1101
BshFI GGCC 1 cut(s) 508
BsiHKAI GWGCWC 1 cut(s) 622
BsiSI CCGG 1 cut(s) 720
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 3 cut(s) 226, 772, 877
BsmAI GTCTC 2 cut(s) 235, 718
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 1 cut(s) 508
Bso31I GGTCTC 2 cut(s) 235, 718
Bsp1286I GDGCHC 1 cut(s) 622
Bsp1407I TGTACA 2 cut(s) 267, 574
Bsp143I GATC 1 cut(s) 402
BspACI CCGC 2 cut(s) 114, 384
BspANI GGCC 1 cut(s) 508
BspCNI CTCAG 4 cut(s) 102, 150, 231, 634
BspLI GGNNCC 2 cut(s) 148, 753
BspPI GGATC 1 cut(s) 397
BspTNI GGTCTC 2 cut(s) 235, 718
BsrBI CCGCTC 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 231
BsrGI TGTACA 2 cut(s) 267, 574
BsrI ACTGG 2 cut(s) 496, 1015
BssMI GATC 1 cut(s) 402
Bst4CI ACNGT 4 cut(s) 531, 574, 729, 1069
Bst6I CTCTTC 4 cut(s) 240, 323, 817, 845
BstAUI TGTACA 2 cut(s) 267, 574
BstC8I GCNNGC 2 cut(s) 341, 972
BstDEI CTNAG 6 cut(s) 7, 110, 137, 239, 555, 621
BstF5I GGATG 3 cut(s) 154, 172, 777
BstKTI GATC 1 cut(s) 405
BstMAI GTCTC 2 cut(s) 235, 718
BstMBI GATC 1 cut(s) 402
BstNSI RCATGY 2 cut(s) 843, 974
BstSCI CCNGG 1 cut(s) 719
BstSFI CTRYAG 2 cut(s) 88, 694
BstV2I GAAGAC 3 cut(s) 266, 373, 380
BsuRI GGCC 1 cut(s) 508
BtsCI GGATG 3 cut(s) 154, 172, 777
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 1 cut(s) 453
Cac8I GCNNGC 2 cut(s) 341, 972
CaiI CAGNNNCTG 1 cut(s) 1067
Csp6I GTAC 5 cut(s) 171, 268, 311, 575, 776
CviAII CATG 6 cut(s) 151, 320, 431, 756, 840, 971
CviQI GTAC 5 cut(s) 171, 268, 311, 575, 776
DdeI CTNAG 6 cut(s) 7, 110, 137, 239, 555, 621
DpnI GATC 1 cut(s) 404
DpnII GATC 1 cut(s) 402
EaeI YGGCCR 1 cut(s) 506
Eam1104I CTCTTC 4 cut(s) 240, 323, 817, 845
EarI CTCTTC 4 cut(s) 240, 323, 817, 845
Ecl136II GAGCTC 1 cut(s) 620
Eco24I GRGCYC 1 cut(s) 622
Eco31I GGTCTC 2 cut(s) 235, 718
Eco53kI GAGCTC 1 cut(s) 620
Eco57I CTGAAG 3 cut(s) 50, 278, 626
EcoICRI GAGCTC 1 cut(s) 620
EcoT22I ATGCAT 3 cut(s) 67, 156, 673
EcoT38I GRGCYC 1 cut(s) 622
FaeI CATG 6 cut(s) 154, 323, 434, 759, 843, 974
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FaqI GGGAC 1 cut(s) 203
FatI CATG 6 cut(s) 150, 319, 430, 755, 839, 970
FauI CCCGC 1 cut(s) 107
FauNDI CATATG 1 cut(s) 998
Fnu4HI GCNGC 1 cut(s) 384
FokI GGATG 3 cut(s) 141, 179, 784
FriOI GRGCYC 1 cut(s) 622
Fsp4HI GCNGC 1 cut(s) 384
FspBI CTAG 1 cut(s) 215
GluI GCNGC 1 cut(s) 384
HaeIII GGCC 1 cut(s) 508
HapII CCGG 1 cut(s) 720
Hin1II CATG 6 cut(s) 154, 323, 434, 759, 843, 974
HindIII AAGCTT 2 cut(s) 356, 473
HinfI GANTC 3 cut(s) 333, 390, 627
HpaII CCGG 1 cut(s) 720
HphI GGTGA 1 cut(s) 1124
Hpy188I TCNGA 8 cut(s) 30, 111, 240, 258, 402, 527, 717, 978
Hpy188III TCNNGA 4 cut(s) 413, 862, 878, 965
HpyAV CCTTC 7 cut(s) 137, 294, 388, 470, 559, 593, 742
HpyCH4III ACNGT 4 cut(s) 531, 574, 729, 1069
HpyF3I CTNAG 6 cut(s) 7, 110, 137, 239, 555, 621
Hsp92II CATG 6 cut(s) 154, 323, 434, 759, 843, 974
Kzo9I GATC 1 cut(s) 402
LmnI GCTCC 2 cut(s) 979, 1103
LweI GCATC 3 cut(s) 163, 444, 807
MaeI CTAG 1 cut(s) 215
MalI GATC 1 cut(s) 404
MbiI CCGCTC 1 cut(s) 114
MboI GATC 1 cut(s) 402
MboII GAAGA 9 cut(s) 227, 271, 340, 378, 385, 504, 804, 862, 997
MhlI GDGCHC 1 cut(s) 622
MlsI TGGCCA 1 cut(s) 508
MluCI AATT 8 cut(s) 274, 396, 593, 802, 857, 937, 980, 1053
MluNI TGGCCA 1 cut(s) 508
Mox20I TGGCCA 1 cut(s) 508
Mph1103I ATGCAT 3 cut(s) 67, 156, 673
MroXI GAANNNNTTC 2 cut(s) 377, 603
MscI TGGCCA 1 cut(s) 508
MseI TTAA 9 cut(s) 96, 126, 195, 360, 470, 702, 731, 828, 1077
Msp20I TGGCCA 1 cut(s) 508
MspI CCGG 1 cut(s) 720
MspR9I CCNGG 1 cut(s) 721
NciI CCSGG 1 cut(s) 721
NdeI CATATG 1 cut(s) 998
NdeII GATC 1 cut(s) 402
NlaIII CATG 6 cut(s) 154, 323, 434, 759, 843, 974
NlaIV GGNNCC 2 cut(s) 148, 753
NsiI ATGCAT 3 cut(s) 67, 156, 673
NspI RCATGY 2 cut(s) 843, 974
PaeI GCATGC 1 cut(s) 974
PdmI GAANNNNTTC 2 cut(s) 377, 603
PfeI GAWTC 3 cut(s) 333, 390, 627
PflFI GACNNNGTC 1 cut(s) 215
PflMI CCANNNNNTGG 2 cut(s) 772, 877
PkrI GCNGC 1 cut(s) 385
Psp124BI GAGCTC 1 cut(s) 622
PspN4I GGNNCC 2 cut(s) 148, 753
PstNI CAGNNNCTG 1 cut(s) 1067
PsyI GACNNNGTC 1 cut(s) 215
RsaI GTAC 5 cut(s) 172, 269, 312, 576, 777
RsaNI GTAC 5 cut(s) 171, 268, 311, 575, 776
SacI GAGCTC 1 cut(s) 622
SaqAI TTAA 9 cut(s) 96, 126, 195, 360, 470, 702, 731, 828, 1077
SatI GCNGC 1 cut(s) 384
Sau3AI GATC 1 cut(s) 402
ScrFI CCNGG 1 cut(s) 721
SduI GDGCHC 1 cut(s) 622
SfaNI GCATC 3 cut(s) 163, 444, 807
SfcI CTRYAG 2 cut(s) 88, 694
SmlI CTYRAG 3 cut(s) 476, 896, 965
SmoI CTYRAG 3 cut(s) 476, 896, 965
SphI GCATGC 1 cut(s) 974
Sse9I AATT 8 cut(s) 274, 396, 593, 802, 857, 937, 980, 1053
SsiI CCGC 2 cut(s) 114, 384
SspMI CTAG 1 cut(s) 215
SstI GAGCTC 1 cut(s) 622
StyD4I CCNGG 1 cut(s) 719
TaaI ACNGT 4 cut(s) 531, 574, 729, 1069
TaqI TCGA 2 cut(s) 364, 537
TaqII GACCGA 1 cut(s) 385
TasI AATT 8 cut(s) 274, 396, 593, 802, 857, 937, 980, 1053
TatI WGTACW 2 cut(s) 267, 574
TauI GCSGC 1 cut(s) 386
TfiI GAWTC 3 cut(s) 333, 390, 627
Tru1I TTAA 9 cut(s) 96, 126, 195, 360, 470, 702, 731, 828, 1077
Tru9I TTAA 9 cut(s) 96, 126, 195, 360, 470, 702, 731, 828, 1077
TscAI CASTG 1 cut(s) 453
TspDTI ATGAA 6 cut(s) 60, 308, 409, 419, 452, 878
TspRI CASTG 1 cut(s) 453
Tth111I GACNNNGTC 1 cut(s) 215
Van91I CCANNNNNTGG 2 cut(s) 772, 877
XapI RAATTY 3 cut(s) 593, 857, 1053
XceI RCATGY 2 cut(s) 843, 974
XmnI GAANNNNTTC 2 cut(s) 377, 603
XspI CTAG 1 cut(s) 215
Zsp2I ATGCAT 3 cut(s) 67, 156, 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.