Rh6CG399700

tail specific protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0018604
Physical Location & Seq
Reverse (-)
58642451 .. 58644324
1874 bp
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UTR
Exon/CDS
Intron
Rh6CG399700.1

Sequence Viewer

Length: 267 bp
ATGAAGCAAAATTGTGATGGTTTAGAGTCCGGTGGAAAAGGATATGTTGTTATGTCTTGTGTAGACGGTAGCCCAGCTGCTCTTGCTGGTATTCATGAGGGAGATGAGTTGGTTGAAATTAACGGTGGTCTGCAGGAGTTTGATGCATCTAGGAATACTTTTGCTGTTATTCTGGCATATCTCAATGCAATTCTTCTCATATACTTGTGTACTCACGAGGTCATGAAGCAAGCAGAAAATACTACAATGATTGCTCCGAGTAGGTAA

Protein Analysis

88

Amino Acids

9.41

Weight (kDa)

4.56

Isoelectric Point (pI)

58.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDZ PF00595 12 - 57 4.5e-06 PDZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 63
AfaI GTAC 1 cut(s) 211
AgsI TTSAA 1 cut(s) 116
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 77
BauI CACGAG 1 cut(s) 215
BbvI GCAGC 1 cut(s) 64
BccI CCATC 1 cut(s) 11
BfaI CTAG 1 cut(s) 150
BfmI CTRYAG 1 cut(s) 131
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
BmsI GCATC 2 cut(s) 133, 155
BsaWI WCCGGW 1 cut(s) 29
BseXI GCAGC 1 cut(s) 64
BseYI CCCAGC 1 cut(s) 73
BsiSI CCGG 1 cut(s) 30
BspHI TCATGA 2 cut(s) 94, 222
BspMAI CTGCAG 1 cut(s) 135
BssSI CACGAG 1 cut(s) 215
Bst2BI CACGAG 1 cut(s) 215
Bst4CI ACNGT 2 cut(s) 68, 125
BstC8I GCNNGC 1 cut(s) 231
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstSFI CTRYAG 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 64
Cac8I GCNNGC 1 cut(s) 231
CciI TCATGA 2 cut(s) 94, 222
Csp6I GTAC 1 cut(s) 210
CviAII CATG 2 cut(s) 95, 223
CviJI RGCY 2 cut(s) 72, 77
CviKI_1 RGCY 2 cut(s) 72, 77
CviQI GTAC 1 cut(s) 210
EcoT22I ATGCAT 1 cut(s) 148
FaeI CATG 2 cut(s) 98, 226
FaiI YATR 7 cut(s) 45, 53, 96, 178, 200, 202, 224
FatI CATG 2 cut(s) 94, 222
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 1 cut(s) 150
GluI GCNGC 1 cut(s) 78
GsaI CCCAGC 1 cut(s) 77
HapII CCGG 1 cut(s) 30
Hin1II CATG 2 cut(s) 98, 226
HinfI GANTC 1 cut(s) 26
HpaII CCGG 1 cut(s) 30
Hpy166II GTNNAC 2 cut(s) 64, 210
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 3 cut(s) 95, 215, 223
Hpy8I GTNNAC 2 cut(s) 64, 210
HpyCH4III ACNGT 2 cut(s) 68, 125
HpyCH4V TGCA 3 cut(s) 133, 146, 188
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
Hsp92II CATG 2 cut(s) 98, 226
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 5 cut(s) 43, 72, 87, 119, 158
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 2 cut(s) 133, 155
MaeI CTAG 1 cut(s) 150
MboII GAAGA 1 cut(s) 185
MluCI AATT 3 cut(s) 10, 117, 189
MlyI GAGTC 1 cut(s) 35
MnlI CCTC 2 cut(s) 91, 211
Mph1103I ATGCAT 1 cut(s) 148
MseI TTAA 1 cut(s) 120
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 1 cut(s) 30
MwoI GCNNNNNNNGC 1 cut(s) 83
NlaIII CATG 2 cut(s) 98, 226
NsiI ATGCAT 1 cut(s) 148
PagI TCATGA 2 cut(s) 94, 222
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PspFI CCCAGC 1 cut(s) 73
PstI CTGCAG 1 cut(s) 135
PvuII CAGCTG 1 cut(s) 77
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 1 cut(s) 78
SchI GAGTC 1 cut(s) 35
SetI ASST 3 cut(s) 79, 222, 266
SfaNI GCATC 2 cut(s) 133, 155
SfcI CTRYAG 1 cut(s) 131
Sse9I AATT 3 cut(s) 10, 117, 189
SspMI CTAG 1 cut(s) 150
TaaI ACNGT 2 cut(s) 68, 125
TasI AATT 3 cut(s) 10, 117, 189
TatI WGTACW 1 cut(s) 209
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 3 cut(s) 17, 83, 239
XmiI GTMKAC 1 cut(s) 63
XspI CTAG 1 cut(s) 150
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.