Rh7DG212800

NHL repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0018604
Physical Location & Seq
Forward (+)
20519225 .. 20531317
12093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG212800.1

Sequence Viewer

Length: 276 bp
ATGGTCTCCATGGAACTGCTAATCAACTCTCCATGGGATGTCTGCTTTCATCCAGTCAATGAGAAAGTTTATATTGCCATGGCTGGCCAACATCAAATTTGGCAACTTGATACAGCTGATGGGATTACTAGAGCATTTAGTGGTGATGGTTATGAAAGAAATCTGAATGGATCAAGATATTCTGCCCAGGGCAGCCTAGACTTCTTAAGGTGTTACATAGAGTATACGCCGTATACCGATTATCCCAAGGCACTATTTTATCTGAGAAGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HAD_2 NHL Thioredoxin_8

Protein Analysis

91

Amino Acids

10.54

Weight (kDa)

5.1

Isoelectric Point (pI)

27.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 224, 233
AclWI GGATC 1 cut(s) 178
AcoI YGGCCR 1 cut(s) 85
AcsI RAATTY 1 cut(s) 96
AflII CTTAAG 1 cut(s) 205
AjnI CCWGG 1 cut(s) 186
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
Alw26I GTCTC 1 cut(s) 10
AlwI GGATC 1 cut(s) 178
AoxI GGCC 1 cut(s) 85
ApeKI GCWGC 1 cut(s) 192
ApoI RAATTY 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 155
BalI TGGCCA 1 cut(s) 87
BbvI GCAGC 1 cut(s) 204
BccI CCATC 2 cut(s) 113, 140
BceAI ACGGC 1 cut(s) 214
BciT130I CCWGG 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 10
BfaI CTAG 2 cut(s) 129, 197
BfrI CTTAAG 1 cut(s) 205
BisI GCNGC 1 cut(s) 193
BlsI GCNGC 1 cut(s) 194
Bme1390I CCNGG 1 cut(s) 188
BmrFI CCNGG 1 cut(s) 188
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 6 cut(s) 9, 32, 78, 186, 187, 246
Bse1I ACTGG 1 cut(s) 53
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 6 cut(s) 9, 32, 78, 186, 187, 246
BseGI GGATG 2 cut(s) 43, 49
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 1 cut(s) 53
BseXI GCAGC 1 cut(s) 204
BshFI GGCC 1 cut(s) 87
BsmAI GTCTC 1 cut(s) 10
BsnI GGCC 1 cut(s) 87
Bso31I GGTCTC 1 cut(s) 10
Bsp143I GATC 1 cut(s) 170
Bsp19I CCATGG 3 cut(s) 9, 32, 78
BspANI GGCC 1 cut(s) 87
BspCNI CTCAG 1 cut(s) 255
BspPI GGATC 1 cut(s) 178
BspTI CTTAAG 1 cut(s) 205
BspTNI GGTCTC 1 cut(s) 10
BsrI ACTGG 1 cut(s) 53
BssECI CCNNGG 6 cut(s) 9, 32, 78, 186, 187, 246
BssMI GATC 1 cut(s) 170
BssNAI GTATAC 2 cut(s) 225, 234
BssT1I CCWWGG 4 cut(s) 9, 32, 78, 246
Bst1107I GTATAC 2 cut(s) 225, 234
Bst2UI CCWGG 1 cut(s) 188
BstAFI CTTAAG 1 cut(s) 205
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 1 cut(s) 263
BstDSI CCRYGG 3 cut(s) 9, 32, 78
BstF5I GGATG 2 cut(s) 43, 49
BstKTI GATC 1 cut(s) 173
BstMAI GTCTC 1 cut(s) 10
BstMBI GATC 1 cut(s) 170
BstNI CCWGG 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 204
BstZ17I GTATAC 2 cut(s) 225, 234
BsuRI GGCC 1 cut(s) 87
BtgI CCRYGG 3 cut(s) 9, 32, 78
BtsCI GGATG 2 cut(s) 43, 49
Cac8I GCNNGC 1 cut(s) 85
CviAII CATG 3 cut(s) 10, 33, 79
CviJI RGCY 4 cut(s) 83, 87, 116, 195
CviKI_1 RGCY 4 cut(s) 83, 87, 116, 195
DdeI CTNAG 1 cut(s) 263
DpnI GATC 1 cut(s) 172
DpnII GATC 1 cut(s) 170
EaeI YGGCCR 1 cut(s) 85
Eco130I CCWWGG 4 cut(s) 9, 32, 78, 246
Eco31I GGTCTC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 186
EcoT14I CCWWGG 4 cut(s) 9, 32, 78, 246
ErhI CCWWGG 4 cut(s) 9, 32, 78, 246
FaeI CATG 3 cut(s) 13, 36, 82
FaiI YATR 9 cut(s) 11, 34, 72, 80, 153, 218, 225, 234, 272
FatI CATG 3 cut(s) 9, 32, 78
FblI GTMKAC 2 cut(s) 224, 233
Fnu4HI GCNGC 1 cut(s) 193
FokI GGATG 2 cut(s) 36, 50
Fsp4HI GCNGC 1 cut(s) 193
FspBI CTAG 2 cut(s) 129, 197
GluI GCNGC 1 cut(s) 193
HaeIII GGCC 1 cut(s) 87
Hin1II CATG 3 cut(s) 13, 36, 82
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 2 cut(s) 225, 234
Hpy188I TCNGA 2 cut(s) 165, 264
Hpy188III TCNNGA 1 cut(s) 174
Hpy8I GTNNAC 2 cut(s) 225, 234
HpyF3I CTNAG 1 cut(s) 263
Hsp92II CATG 3 cut(s) 13, 36, 82
Kzo9I GATC 1 cut(s) 170
LpnPI CCDG 4 cut(s) 66, 69, 173, 200
Lsp1109I GCAGC 1 cut(s) 204
MaeI CTAG 2 cut(s) 129, 197
MaeIII GTNAC 1 cut(s) 212
MalI GATC 1 cut(s) 172
MboI GATC 1 cut(s) 170
MlsI TGGCCA 1 cut(s) 87
MluCI AATT 1 cut(s) 96
MluNI TGGCCA 1 cut(s) 87
Mox20I TGGCCA 1 cut(s) 87
MscI TGGCCA 1 cut(s) 87
MseI TTAA 1 cut(s) 206
Msp20I TGGCCA 1 cut(s) 87
MspA1I CMGCKG 1 cut(s) 116
MspCI CTTAAG 1 cut(s) 205
MspR9I CCNGG 1 cut(s) 188
MvaI CCWGG 1 cut(s) 188
NcoI CCATGG 3 cut(s) 9, 32, 78
NdeII GATC 1 cut(s) 170
NlaIII CATG 3 cut(s) 13, 36, 82
PasI CCCWGGG 1 cut(s) 187
PkrI GCNGC 1 cut(s) 194
Psp6I CCWGG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 186
PvuII CAGCTG 1 cut(s) 116
SaqAI TTAA 1 cut(s) 206
SatI GCNGC 1 cut(s) 193
Sau3AI GATC 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 188
SetI ASST 2 cut(s) 118, 212
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
Sse9I AATT 1 cut(s) 96
SspMI CTAG 2 cut(s) 129, 197
StyD4I CCNGG 1 cut(s) 186
StyI CCWWGG 4 cut(s) 9, 32, 78, 246
TasI AATT 1 cut(s) 96
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TseI GCWGC 1 cut(s) 192
TspDTI ATGAA 2 cut(s) 38, 168
Vha464I CTTAAG 1 cut(s) 205
XapI RAATTY 1 cut(s) 96
XmiI GTMKAC 2 cut(s) 224, 233
XspI CTAG 2 cut(s) 129, 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.