Rh6CG404700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0018447
Physical Location & Seq
Reverse (-)
59034308 .. 59035187
880 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG404700.1

Sequence Viewer

Length: 234 bp
ATGGAGGTCGCTGGGATTCGTCTGTGCTTGGCCACCGGTGAGGTGAGACCGGGCTGTGGCTGTCTAGATCAATGTGTTGGGTGCCGAGAGCAATTTGCTCTTGGCTGTGGGATGCAGCAACAGCGTGGCGCAGGAGGGTCGTGCAGCAAGCTCGGGGCGCGGGGCTGCTGTCAGGCGGCGAGGGCTGACTGGAGGCCGGTCTGGGCAGGGAAGGAGAAGAACAGCTGCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.01

Weight (kDa)

8.61

Isoelectric Point (pI)

21.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018447)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g29841
rosa_multiflora Rmu_sc0007408.1_g000011
rosa_roxburghii Rroxscaffold_3G00235700
rosa_samantha Rh2CG299200 Rh2CG367200 Rh2DG336500 Rh6CG404700 Rh7BG351000 Rh7DG355900
rosa_wichuraiana Rw7G030660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 81
AccII CGCG 1 cut(s) 160
AciI CCGC 3 cut(s) 160, 176, 228
AcoI YGGCCR 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 56
AgeI ACCGGT 1 cut(s) 35
AluBI AGCT 2 cut(s) 151, 225
AluI AGCT 2 cut(s) 151, 225
Alw26I GTCTC 1 cut(s) 40
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 2 cut(s) 30, 194
ApeKI GCWGC 4 cut(s) 115, 144, 165, 225
AsiGI ACCGGT 1 cut(s) 35
AspLEI GCGC 2 cut(s) 131, 160
AsuC2I CCSGG 1 cut(s) 51
AsuHPI GGTGA 2 cut(s) 50, 55
AvaI CYCGRG 1 cut(s) 152
BalI TGGCCA 1 cut(s) 32
BanI GGYRCC 1 cut(s) 81
BbvI GCAGC 4 cut(s) 127, 152, 156, 212
BcgI CGANNNNNNTGC 4 cut(s) 120, 133, 154, 167
BcnI CCSGG 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 40
BfaI CTAG 1 cut(s) 65
BisI GCNGC 5 cut(s) 116, 145, 166, 177, 226
BlsI GCNGC 5 cut(s) 117, 146, 167, 178, 227
Bme1390I CCNGG 1 cut(s) 51
BmeT110I CYCGRG 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 83
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 1 cut(s) 102
BpmI CTGGAG 1 cut(s) 211
BpuMI CCSGG 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 40
BsaWI WCCGGW 1 cut(s) 35
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse118I RCCGGY 2 cut(s) 35, 196
Bse1I ACTGG 1 cut(s) 194
BseGI GGATG 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 194
BseXI GCAGC 4 cut(s) 127, 152, 156, 212
BseYI CCCAGC 1 cut(s) 11
BsgI GTGCAG 1 cut(s) 163
Bsh1236I CGCG 1 cut(s) 160
BshFI GGCC 2 cut(s) 32, 196
BshNI GGYRCC 1 cut(s) 81
BshTI ACCGGT 1 cut(s) 35
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 3 cut(s) 36, 50, 197
BslI CCNNNNNNNGG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 40
BsnI GGCC 2 cut(s) 32, 196
Bso31I GGTCTC 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 152
Bsp143I GATC 1 cut(s) 67
BspACI CCGC 3 cut(s) 160, 176, 228
BspANI GGCC 2 cut(s) 32, 196
BspFNI CGCG 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 81
BspTNI GGTCTC 1 cut(s) 40
BsrFI RCCGGY 2 cut(s) 35, 196
BsrI ACTGG 1 cut(s) 194
BssAI RCCGGY 2 cut(s) 35, 196
BssMI GATC 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 149
BstF5I GGATG 1 cut(s) 117
BstFNI CGCG 1 cut(s) 160
BstHHI GCGC 2 cut(s) 131, 160
BstKTI GATC 1 cut(s) 70
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 1 cut(s) 67
BstMWI GCNNNNNNNGC 3 cut(s) 121, 157, 182
BstSCI CCNGG 1 cut(s) 49
BstUI CGCG 1 cut(s) 160
BstV1I GCAGC 4 cut(s) 127, 152, 156, 212
BsuRI GGCC 2 cut(s) 32, 196
BtsCI GGATG 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 149
CfoI GCGC 2 cut(s) 131, 160
Cfr10I RCCGGY 2 cut(s) 35, 196
CspAI ACCGGT 1 cut(s) 35
CviJI RGCY 9 cut(s) 32, 54, 60, 105, 151, 165, 185, 196, 225
CviKI_1 RGCY 9 cut(s) 32, 54, 60, 105, 151, 165, 185, 196, 225
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
EaeI YGGCCR 1 cut(s) 30
Eco31I GGTCTC 1 cut(s) 40
Eco88I CYCGRG 1 cut(s) 152
FauI CCCGC 1 cut(s) 153
Fnu4HI GCNGC 5 cut(s) 116, 145, 166, 177, 226
FokI GGATG 1 cut(s) 124
Fsp4HI GCNGC 5 cut(s) 116, 145, 166, 177, 226
FspBI CTAG 1 cut(s) 65
GlaI GCGC 2 cut(s) 130, 159
GluI GCNGC 5 cut(s) 116, 145, 166, 177, 226
GsaI CCCAGC 1 cut(s) 15
GsuI CTGGAG 1 cut(s) 211
HaeIII GGCC 2 cut(s) 32, 196
HapII CCGG 3 cut(s) 36, 50, 197
HhaI GCGC 2 cut(s) 131, 160
Hin6I GCGC 2 cut(s) 129, 158
HinP1I GCGC 2 cut(s) 129, 158
HinfI GANTC 1 cut(s) 16
HpaII CCGG 3 cut(s) 36, 50, 197
HphI GGTGA 2 cut(s) 50, 55
Hpy188III TCNNGA 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 205
HpyCH4V TGCA 2 cut(s) 115, 144
HpyF10VI GCNNNNNNNGC 3 cut(s) 121, 157, 182
HspAI GCGC 2 cut(s) 129, 158
Kzo9I GATC 1 cut(s) 67
LpnPI CCDG 8 cut(s) 49, 63, 117, 158, 175, 187, 192, 210
Lsp1109I GCAGC 4 cut(s) 127, 152, 156, 212
LweI GCATC 1 cut(s) 102
MaeI CTAG 1 cut(s) 65
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 1 cut(s) 229
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 1 cut(s) 92
MluNI TGGCCA 1 cut(s) 32
MnlI CCTC 4 cut(s) 34, 128, 174, 186
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
Msp20I TGGCCA 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 225
MspI CCGG 3 cut(s) 36, 50, 197
MspR9I CCNGG 1 cut(s) 51
MvnI CGCG 1 cut(s) 160
MwoI GCNNNNNNNGC 3 cut(s) 121, 157, 182
NciI CCSGG 1 cut(s) 51
NdeII GATC 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 83
NmeAIII GCCGAG 1 cut(s) 110
PfeI GAWTC 1 cut(s) 16
PinAI ACCGGT 1 cut(s) 35
PkrI GCNGC 5 cut(s) 117, 146, 167, 178, 227
PspFI CCCAGC 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 83
PvuII CAGCTG 1 cut(s) 225
SatI GCNGC 5 cut(s) 116, 145, 166, 177, 226
Sau3AI GATC 1 cut(s) 67
ScrFI CCNGG 1 cut(s) 51
SetI ASST 4 cut(s) 9, 45, 153, 227
SfaNI GCATC 1 cut(s) 102
SgrAI CRCCGGYG 1 cut(s) 35
Sse9I AATT 1 cut(s) 92
SsiI CCGC 3 cut(s) 160, 176, 228
SspMI CTAG 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 49
TasI AATT 1 cut(s) 92
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 1 cut(s) 16
TseI GCWGC 4 cut(s) 115, 144, 165, 225
XbaI TCTAGA 1 cut(s) 64
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.