Rh7DG355900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0018447
Physical Location & Seq
Forward (+)
47424142 .. 47445093
20952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG355900.1

Sequence Viewer

Length: 504 bp
ATGCTCGAGGTTGAGCAGAGGCGTCAGGCTTTTGTAAGTCACATAACTTCTAAACAAATGGATGTATCACCACCACTGTCACCTCCATCACCAGAGACCTCTAGCGATGAGGACATTGGAAGTACGAAAGCAGAAGAACCTGAAGGGATTGAGACTGACGACTCTGAGGAATCAAATCTTGATGATTTACCTCCAGAACTTGTCCAACGCATTAGGGAGCTAGAAGCACAGATTGCAGCTCAATATGAGGAACTCGTAAAAGCACAAAGGAAAAAGATGTGGTTGCAAGAAATCATCAATGCAATCAGAGAGCGCATAAGTGAGATGCAGCAGCAGCGTGGTGCAGGCGGGTCGTGCAGCAGGCTCGGGGCGCGGGGCTGCTGTCAGGCGGCGAGGGCTGACTGGAGGCCGGTCTGGGCAGGGAAGAAGAAGAATAGCTGCGGATGGATGTTGGGGCGCGGGTCTGTTGTAAGATGCCGGTGGGCAGATCAATTGGTTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.72

Weight (kDa)

5.23

Isoelectric Point (pI)

67.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018447)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g29841
rosa_multiflora Rmu_sc0007408.1_g000011
rosa_roxburghii Rroxscaffold_3G00235700
rosa_samantha Rh2CG299200 Rh2CG367200 Rh2DG336500 Rh6CG404700 Rh7BG351000 Rh7DG355900
rosa_wichuraiana Rw7G030660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 373, 459
AciI CCGC 5 cut(s) 348, 373, 389, 441, 459
AcuI CTGAAG 1 cut(s) 162
AcyI GRCGYC 1 cut(s) 22
AfaI GTAC 1 cut(s) 124
AluBI AGCT 3 cut(s) 220, 239, 438
AluI AGCT 3 cut(s) 220, 239, 438
Alw26I GTCTC 2 cut(s) 89, 146
Ama87I CYCGRG 2 cut(s) 5, 365
AoxI GGCC 1 cut(s) 407
ApeKI GCWGC 7 cut(s) 236, 328, 331, 334, 357, 378, 438
AspLEI GCGC 3 cut(s) 315, 373, 459
AsuHPI GGTGA 3 cut(s) 60, 72, 81
AvaI CYCGRG 2 cut(s) 5, 365
BbvI GCAGC 7 cut(s) 248, 340, 343, 346, 365, 369, 425
BccI CCATC 2 cut(s) 94, 438
BcgI CGANNNNNNTGC 4 cut(s) 333, 346, 367, 380
BcoDI GTCTC 2 cut(s) 89, 146
BfaI CTAG 2 cut(s) 102, 221
BisI GCNGC 8 cut(s) 237, 329, 332, 335, 358, 379, 390, 439
BlsI GCNGC 8 cut(s) 238, 330, 333, 336, 359, 380, 391, 440
BmeT110I CYCGRG 2 cut(s) 5, 365
BmsI GCATC 2 cut(s) 315, 464
BpmI CTGGAG 2 cut(s) 177, 424
BsaHI GRCGYC 1 cut(s) 22
BsaI GGTCTC 1 cut(s) 89
Bse118I RCCGGY 2 cut(s) 409, 477
Bse1I ACTGG 1 cut(s) 407
BseGI GGATG 3 cut(s) 67, 449, 453
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 407
BseXI GCAGC 7 cut(s) 248, 340, 343, 346, 365, 369, 425
BsgI GTGCAG 2 cut(s) 363, 376
Bsh1236I CGCG 2 cut(s) 373, 459
BshFI GGCC 1 cut(s) 409
BsiHKCI CYCGRG 2 cut(s) 5, 365
BsiSI CCGG 2 cut(s) 410, 478
BsmAI GTCTC 2 cut(s) 89, 146
BsnI GGCC 1 cut(s) 409
Bso31I GGTCTC 1 cut(s) 89
BsoBI CYCGRG 2 cut(s) 5, 365
Bsp143I GATC 1 cut(s) 487
BspACI CCGC 5 cut(s) 348, 373, 389, 441, 459
BspANI GGCC 1 cut(s) 409
BspCNI CTCAG 1 cut(s) 157
BspFNI CGCG 2 cut(s) 373, 459
BspTNI GGTCTC 1 cut(s) 89
BsrFI RCCGGY 2 cut(s) 409, 477
BsrI ACTGG 1 cut(s) 407
BssAI RCCGGY 2 cut(s) 409, 477
BssMI GATC 1 cut(s) 487
BssNI GRCGYC 1 cut(s) 22
Bst4CI ACNGT 1 cut(s) 78
BstACI GRCGYC 1 cut(s) 22
BstAPI GCANNNNNTGC 1 cut(s) 233
BstC8I GCNNGC 2 cut(s) 346, 362
BstDEI CTNAG 1 cut(s) 165
BstF5I GGATG 3 cut(s) 67, 449, 453
BstFNI CGCG 2 cut(s) 373, 459
BstHHI GCGC 3 cut(s) 315, 373, 459
BstKTI GATC 1 cut(s) 490
BstMAI GTCTC 2 cut(s) 89, 146
BstMBI GATC 1 cut(s) 487
BstMWI GCNNNNNNNGC 5 cut(s) 233, 334, 354, 370, 395
BstUI CGCG 2 cut(s) 373, 459
BstV1I GCAGC 7 cut(s) 248, 340, 343, 346, 365, 369, 425
BsuRI GGCC 1 cut(s) 409
BtgZI GCGATG 1 cut(s) 120
BtsCI GGATG 3 cut(s) 67, 449, 453
BtsIMutI CAGTG 1 cut(s) 74
Cac8I GCNNGC 2 cut(s) 346, 362
CfoI GCGC 3 cut(s) 315, 373, 459
Cfr10I RCCGGY 2 cut(s) 409, 477
CseI GACGC 1 cut(s) 11
Csp6I GTAC 1 cut(s) 123
CviJI RGCY 8 cut(s) 29, 220, 239, 364, 378, 398, 409, 438
CviKI_1 RGCY 8 cut(s) 29, 220, 239, 364, 378, 398, 409, 438
CviQI GTAC 1 cut(s) 123
DdeI CTNAG 1 cut(s) 165
DpnI GATC 1 cut(s) 489
DpnII GATC 1 cut(s) 487
Eco31I GGTCTC 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 162
Eco88I CYCGRG 2 cut(s) 5, 365
FaiI YATR 3 cut(s) 44, 246, 317
FauI CCCGC 3 cut(s) 341, 366, 452
Fnu4HI GCNGC 8 cut(s) 237, 329, 332, 335, 358, 379, 390, 439
FokI GGATG 3 cut(s) 74, 456, 460
Fsp4HI GCNGC 8 cut(s) 237, 329, 332, 335, 358, 379, 390, 439
FspBI CTAG 2 cut(s) 102, 221
GlaI GCGC 3 cut(s) 314, 372, 458
GluI GCNGC 8 cut(s) 237, 329, 332, 335, 358, 379, 390, 439
GsuI CTGGAG 2 cut(s) 177, 424
HaeIII GGCC 1 cut(s) 409
HapII CCGG 2 cut(s) 410, 478
HgaI GACGC 1 cut(s) 11
HhaI GCGC 3 cut(s) 315, 373, 459
Hin1I GRCGYC 1 cut(s) 22
Hin6I GCGC 3 cut(s) 313, 371, 457
HinP1I GCGC 3 cut(s) 313, 371, 457
HinfI GANTC 2 cut(s) 161, 170
HpaII CCGG 2 cut(s) 410, 478
HphI GGTGA 3 cut(s) 60, 72, 81
Hpy188I TCNGA 2 cut(s) 166, 308
Hpy188III TCNNGA 2 cut(s) 179, 194
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 1 cut(s) 78
HpyCH4V TGCA 6 cut(s) 236, 286, 302, 328, 344, 357
HpyF10VI GCNNNNNNNGC 5 cut(s) 233, 334, 354, 370, 395
HpyF3I CTNAG 1 cut(s) 165
Hsp92I GRCGYC 1 cut(s) 22
HspAI GCGC 3 cut(s) 313, 371, 457
Kzo9I GATC 1 cut(s) 487
LmnI GCTCC 1 cut(s) 217
Lsp1109I GCAGC 7 cut(s) 248, 340, 343, 346, 365, 369, 425
LweI GCATC 2 cut(s) 315, 464
MaeI CTAG 2 cut(s) 102, 221
MaeIII GTNAC 2 cut(s) 38, 78
MalI GATC 1 cut(s) 489
MboI GATC 1 cut(s) 487
MboII GAAGA 4 cut(s) 146, 436, 439, 442
MfeI CAATTG 1 cut(s) 491
MluCI AATT 1 cut(s) 491
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 9 cut(s) 12, 93, 103, 109, 160, 201, 241, 387, 399
MspI CCGG 2 cut(s) 410, 478
MunI CAATTG 1 cut(s) 491
MvnI CGCG 2 cut(s) 373, 459
MwoI GCNNNNNNNGC 5 cut(s) 233, 334, 354, 370, 395
NdeII GATC 1 cut(s) 487
NmuCI GTSAC 2 cut(s) 38, 78
PaeR7I CTCGAG 1 cut(s) 5
PfeI GAWTC 1 cut(s) 170
PkrI GCNGC 8 cut(s) 238, 330, 333, 336, 359, 380, 391, 440
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PspXI VCTCGAGB 1 cut(s) 5
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
SatI GCNGC 8 cut(s) 237, 329, 332, 335, 358, 379, 390, 439
Sau3AI GATC 1 cut(s) 487
SchI GAGTC 1 cut(s) 155
SetI ASST 8 cut(s) 12, 85, 101, 142, 193, 222, 241, 440
SfaNI GCATC 2 cut(s) 315, 464
Sfr274I CTCGAG 1 cut(s) 5
SlaI CTCGAG 1 cut(s) 5
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
Sse9I AATT 1 cut(s) 491
SsiI CCGC 5 cut(s) 348, 373, 389, 441, 459
SspMI CTAG 2 cut(s) 102, 221
TaaI ACNGT 1 cut(s) 78
TaqI TCGA 1 cut(s) 6
TasI AATT 1 cut(s) 491
TauI GCSGC 1 cut(s) 392
TfiI GAWTC 1 cut(s) 170
TscAI CASTG 1 cut(s) 81
TseFI GTSAC 2 cut(s) 38, 78
TseI GCWGC 7 cut(s) 236, 328, 331, 334, 357, 378, 438
Tsp45I GTSAC 2 cut(s) 38, 78
TspRI CASTG 1 cut(s) 81
XhoI CTCGAG 1 cut(s) 5
XspI CTAG 2 cut(s) 102, 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.