Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0018447

Physical Location & Seq

Genomic Coordinates Forward (+)

36683432 .. 36688486

Gene Structure 5055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG351000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGAAGAACATGGACAAGCGTCCGAAGTCGAGACTCGATCGCCGGAACGCGATCAAGAACATAGACTACGACGCCGATCAGTACTCCCCTACTACTCTCCGGACTCGCTCTCTCGACCCCCCTCCTCTCTCCCATAACCAAACCAGCTTCCACGTCAGAGGCATCGACGGCGAATTCGACCTCATTTGCCGCAGTCTCGGCCTCTCCGGCCCGGAAGACTTCGCCAACCCACTCGCCGCTTGGGAGGCCCAGCGCGCTCGCTCCTCCTCCGACTTCACCTCCCGCCCTCTCCTCCGCCGAAACTATGACATTCCGAAACCTAGGGTTACGACCGCCGTGAAAACTGGAGGCGGAGGAGGAATTAGGGGTGTTTGGCCCAATGATGCCGGGATCGCTGGGTTTGCCGATGACCCGCGATCCCGATCGCCCGACCCGCAACGTGCTTTTGTAAGTCACATAACTTCTAAACAAATGGATTTATCACCACCATTGTCACCTCCATCACCAGAGACCTCCAGCGATGAGGACATTGGAAGTACGAAAGCAGGAGAACCTGAAGGGATTGAGACTGACGACTCTGAGGAATCAAATATTGATGATTTACCACCGGAACTTGTCCAACGCATTAGGGAGCTAGAAGCACAGATTGCAGCTCAATATGAGGAACTTGTAATAGCGCAAAGGAAAAAGATGTGGTTGCAAGAAATCATCAATGCAATCAGAGAGCGCATAATGTTAAGGCAAGCTCAACTATTGCAACGATATTTGCAAGATTCGGATGATCATAATGGTGATGACTCAAATGCCGAGGACATGGATGAGGATGAGGATGAGGATGAGGATGAGGATGATGATGATGATGATGATGATGATAACGACGACAACATGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0140096 GO:1901564 GO:1901698 GO:1901700 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

Pkinase

Protein Analysis

297

Amino Acids

33.44

Weight (kDa)

4.34

Isoelectric Point (pI)

67.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018447)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29841
rosa_multiflora	Rmu_sc0007408.1_g000011
rosa_roxburghii	Rroxscaffold_3G00235700
rosa_samantha	Rh2CG299200 Rh2CG367200 Rh2DG336500 Rh6CG404700 Rh7BG351000 Rh7DG355900
rosa_wichuraiana	Rw7G030660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	50, 255, 415
AccIII	TCCGGA	1 cut(s)	99
AciI	CCGC	8 cut(s)	190, 237, 283, 295, 333, 351, 413, 434
AclWI	GGATC	2 cut(s)	398, 411
AcsI	RAATTY	1 cut(s)	173
AcuI	CTGAAG	1 cut(s)	576
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	2 cut(s)	83, 538
AjiI	CACGTC	1 cut(s)	154
AluBI	AGCT	4 cut(s)	147, 634, 653, 746
AluI	AGCT	4 cut(s)	147, 634, 653, 746
Alw26I	GTCTC	4 cut(s)	25, 200, 503, 560
AlwI	GGATC	2 cut(s)	398, 411
Aor13HI	TCCGGA	1 cut(s)	99
AoxI	GGCC	4 cut(s)	199, 208, 246, 374
ApeKI	GCWGC	1 cut(s)	650
ApoI	RAATTY	1 cut(s)	173
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
AspA2I	CCTAGG	1 cut(s)	320
AspLEI	GCGC	4 cut(s)	255, 257, 679, 729
AspS9I	GGNCC	3 cut(s)	209, 247, 375
AsuC2I	CCSGG	2 cut(s)	212, 388
AsuHPI	GGTGA	5 cut(s)	268, 474, 486, 495, 803
AvrII	CCTAGG	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	662
BccI	CCATC	1 cut(s)	508
BceAI	ACGGC	2 cut(s)	184, 320
BclI	TGATCA	1 cut(s)	781
BcnI	CCSGG	2 cut(s)	212, 388
BcoDI	GTCTC	4 cut(s)	25, 200, 503, 560
BfaI	CTAG	2 cut(s)	321, 635
BglI	GCCNNNNNGGC	1 cut(s)	207
BisI	GCNGC	3 cut(s)	190, 237, 651
BlnI	CCTAGG	1 cut(s)	320
BlsI	GCNGC	3 cut(s)	191, 238, 652
BmcAI	AGTACT	1 cut(s)	83
Bme1390I	CCNGG	2 cut(s)	212, 388
BmgBI	CACGTC	1 cut(s)	154
BmgT120I	GGNCC	3 cut(s)	209, 247, 375
BmrFI	CCNGG	2 cut(s)	212, 388
BmsI	GCATC	2 cut(s)	171, 373
BoxI	GACNNNNGTC	1 cut(s)	18
BpiI	GAAGAC	1 cut(s)	222
BpmI	CTGGAG	2 cut(s)	366, 499
BpuMI	CCSGG	2 cut(s)	212, 388
BsaBI	GATNNNNATC	1 cut(s)	421
BsaHI	GRCGYC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	503
BsaJI	CCNNGG	2 cut(s)	320, 807
BsaWI	WCCGGW	2 cut(s)	99, 607
BsaXI	ACNNNNNCTCC	2 cut(s)	263, 293
Bse1I	ACTGG	1 cut(s)	349
Bse8I	GATNNNNATC	1 cut(s)	421
BseAI	TCCGGA	1 cut(s)	99
BseDI	CCNNGG	2 cut(s)	320, 807
BseGI	GGATG	7 cut(s)	784, 823, 829, 835, 841, 847, 853
BseJI	GATNNNNATC	1 cut(s)	421
BseMII	CTCAG	1 cut(s)	570
BseNI	ACTGG	1 cut(s)	349
BsePI	GCGCGC	1 cut(s)	253
BseRI	GAGGAG	5 cut(s)	114, 253, 256, 281, 369
BseXI	GCAGC	1 cut(s)	662
BseYI	CCCAGC	2 cut(s)	249, 395
Bsh1236I	CGCG	3 cut(s)	50, 255, 415
Bsh1285I	CGRYCG	3 cut(s)	40, 333, 425
BshFI	GGCC	4 cut(s)	201, 210, 248, 376
BsiEI	CGRYCG	3 cut(s)	40, 333, 425
BsiSI	CCGG	6 cut(s)	43, 100, 207, 212, 387, 608
BsmAI	GTCTC	4 cut(s)	25, 200, 503, 560
BsnI	GGCC	4 cut(s)	201, 210, 248, 376
Bso31I	GGTCTC	1 cut(s)	503
Bsp13I	TCCGGA	1 cut(s)	99
Bsp143I	GATC	7 cut(s)	37, 51, 76, 390, 416, 422, 781
BspACI	CCGC	8 cut(s)	190, 237, 283, 295, 333, 351, 413, 434
BspANI	GGCC	4 cut(s)	201, 210, 248, 376
BspCNI	CTCAG	1 cut(s)	571
BspEI	TCCGGA	1 cut(s)	99
BspFNI	CGCG	3 cut(s)	50, 255, 415
BspPI	GGATC	2 cut(s)	398, 411
BspTNI	GGTCTC	1 cut(s)	503
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	2 cut(s)	320, 807
BssHII	GCGCGC	1 cut(s)	253
BssMI	GATC	7 cut(s)	37, 51, 76, 390, 416, 422, 781
BssNI	GRCGYC	1 cut(s)	72
BssT1I	CCWWGG	1 cut(s)	320
BstACI	GRCGYC	1 cut(s)	72
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstC8I	GCNNGC	3 cut(s)	255, 259, 744
BstDEI	CTNAG	1 cut(s)	579
BstF5I	GGATG	7 cut(s)	784, 823, 829, 835, 841, 847, 853
BstFNI	CGCG	3 cut(s)	50, 255, 415
BstHHI	GCGC	4 cut(s)	255, 257, 679, 729
BstKTI	GATC	7 cut(s)	40, 54, 79, 393, 419, 425, 784
BstMAI	GTCTC	4 cut(s)	25, 200, 503, 560
BstMBI	GATC	7 cut(s)	37, 51, 76, 390, 416, 422, 781
BstMCI	CGRYCG	3 cut(s)	40, 333, 425
BstMWI	GCNNNNNNNGC	9 cut(s)	168, 198, 207, 245, 254, 392, 401, 433, 647
BstPAI	GACNNNNGTC	1 cut(s)	18
BstSCI	CCNGG	2 cut(s)	210, 386
BstUI	CGCG	3 cut(s)	50, 255, 415
BstV1I	GCAGC	1 cut(s)	662
BstV2I	GAAGAC	1 cut(s)	222
BsuRI	GGCC	4 cut(s)	201, 210, 248, 376
BtgZI	GCGATG	1 cut(s)	534
BtrI	CACGTC	1 cut(s)	154
BtsCI	GGATG	7 cut(s)	784, 823, 829, 835, 841, 847, 853
Cac8I	GCNNGC	3 cut(s)	255, 259, 744
CfoI	GCGC	4 cut(s)	255, 257, 679, 729
Cfr13I	GGNCC	3 cut(s)	209, 247, 375
CseI	GACGC	2 cut(s)	8, 80
Csp6I	GTAC	2 cut(s)	82, 537
CviAII	CATG	3 cut(s)	10, 814, 886
CviJI	RGCY	8 cut(s)	147, 201, 210, 248, 376, 634, 653, 746
CviKI_1	RGCY	8 cut(s)	147, 201, 210, 248, 376, 634, 653, 746
CviQI	GTAC	2 cut(s)	82, 537
DdeI	CTNAG	1 cut(s)	579
DpnI	GATC	7 cut(s)	39, 53, 78, 392, 418, 424, 783
DpnII	GATC	7 cut(s)	37, 51, 76, 390, 416, 422, 781
EciI	GGCGGA	2 cut(s)	284, 366
Eco130I	CCWWGG	1 cut(s)	320
Eco31I	GGTCTC	1 cut(s)	503
Eco57I	CTGAAG	1 cut(s)	576
EcoRI	GAATTC	1 cut(s)	173
EcoT14I	CCWWGG	1 cut(s)	320
ErhI	CCWWGG	1 cut(s)	320
FaeI	CATG	3 cut(s)	13, 817, 889
FatI	CATG	3 cut(s)	9, 813, 885
FauI	CCCGC	3 cut(s)	290, 420, 441
FbaI	TGATCA	1 cut(s)	781
Fnu4HI	GCNGC	3 cut(s)	190, 237, 651
FokI	GGATG	7 cut(s)	791, 830, 836, 842, 848, 854, 860
Fsp4HI	GCNGC	3 cut(s)	190, 237, 651
FspBI	CTAG	2 cut(s)	321, 635
GlaI	GCGC	4 cut(s)	254, 256, 678, 728
GluI	GCNGC	3 cut(s)	190, 237, 651
GsaI	CCCAGC	2 cut(s)	253, 399
GsuI	CTGGAG	2 cut(s)	366, 499
HaeIII	GGCC	4 cut(s)	201, 210, 248, 376
HapII	CCGG	6 cut(s)	43, 100, 207, 212, 387, 608
HgaI	GACGC	2 cut(s)	8, 80
HhaI	GCGC	4 cut(s)	255, 257, 679, 729
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	3 cut(s)	13, 817, 889
Hin6I	GCGC	4 cut(s)	253, 255, 677, 727
HinP1I	GCGC	4 cut(s)	253, 255, 677, 727
HinfI	GANTC	6 cut(s)	33, 103, 575, 584, 773, 797
HpaII	CCGG	6 cut(s)	43, 100, 207, 212, 387, 608
HphI	GGTGA	5 cut(s)	268, 474, 486, 495, 803
Hpy188I	TCNGA	7 cut(s)	24, 158, 271, 315, 580, 722, 778
Hpy188III	TCNNGA	5 cut(s)	30, 55, 100, 113, 420
Hpy99I	CGWCG	3 cut(s)	74, 170, 881
HpyAV	CCTTC	1 cut(s)	551
HpyCH4IV	ACGT	2 cut(s)	153, 439
HpyCH4V	TGCA	5 cut(s)	650, 700, 716, 757, 769
HpyF10VI	GCNNNNNNNGC	9 cut(s)	168, 198, 207, 245, 254, 392, 401, 433, 647
HpyF3I	CTNAG	1 cut(s)	579
HpySE526I	ACGT	2 cut(s)	153, 439
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	3 cut(s)	13, 817, 889
HspAI	GCGC	4 cut(s)	253, 255, 677, 727
Kpn2I	TCCGGA	1 cut(s)	99
Ksp22I	TGATCA	1 cut(s)	781
Kzo9I	GATC	7 cut(s)	37, 51, 76, 390, 416, 422, 781
LmnI	GCTCC	2 cut(s)	266, 631
Lsp1109I	GCAGC	1 cut(s)	662
LweI	GCATC	2 cut(s)	171, 373
MaeI	CTAG	2 cut(s)	321, 635
MaeII	ACGT	2 cut(s)	153, 439
MaeIII	GTNAC	3 cut(s)	325, 452, 492
MalI	GATC	7 cut(s)	39, 53, 78, 392, 418, 424, 783
MboI	GATC	7 cut(s)	37, 51, 76, 390, 416, 422, 781
MboII	GAAGA	2 cut(s)	16, 227
MluCI	AATT	2 cut(s)	173, 360
MlyI	GAGTC	4 cut(s)	27, 97, 569, 791
MmeI	TCCRAC	2 cut(s)	294, 643
MroI	TCCGGA	1 cut(s)	99
MseI	TTAA	1 cut(s)	737
MslI	CAYNNNNRTG	1 cut(s)	789
MspI	CCGG	6 cut(s)	43, 100, 207, 212, 387, 608
MspR9I	CCNGG	2 cut(s)	212, 388
MvnI	CGCG	3 cut(s)	50, 255, 415
MwoI	GCNNNNNNNGC	9 cut(s)	168, 198, 207, 245, 254, 392, 401, 433, 647
NciI	CCSGG	2 cut(s)	212, 388
NdeII	GATC	7 cut(s)	37, 51, 76, 390, 416, 422, 781
NlaIII	CATG	3 cut(s)	13, 817, 889
NmeAIII	GCCGAG	2 cut(s)	177, 832
NmuCI	GTSAC	2 cut(s)	452, 492
PauI	GCGCGC	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PfeI	GAWTC	2 cut(s)	584, 773
PkrI	GCNGC	3 cut(s)	191, 238, 652
Ple19I	CGATCG	2 cut(s)	40, 425
PleI	GAGTC	4 cut(s)	27, 97, 569, 791
PpsI	GAGTC	4 cut(s)	27, 97, 569, 791
PshAI	GACNNNNGTC	1 cut(s)	18
PspFI	CCCAGC	2 cut(s)	249, 395
PspPI	GGNCC	3 cut(s)	209, 247, 375
PsrI	GAACNNNNNNTAC	2 cut(s)	50, 82
PteI	GCGCGC	1 cut(s)	253
PvuI	CGATCG	2 cut(s)	40, 425
RsaI	GTAC	2 cut(s)	83, 538
RsaNI	GTAC	2 cut(s)	82, 537
RseI	CAYNNNNRTG	1 cut(s)	789
SaqAI	TTAA	1 cut(s)	737
SatI	GCNGC	3 cut(s)	190, 237, 651
Sau3AI	GATC	7 cut(s)	37, 51, 76, 390, 416, 422, 781
Sau96I	GGNCC	3 cut(s)	209, 247, 375
ScaI	AGTACT	1 cut(s)	83
SchI	GAGTC	4 cut(s)	27, 97, 569, 791
ScrFI	CCNGG	2 cut(s)	212, 388
SfaNI	GCATC	2 cut(s)	171, 373
SfiI	GGCCNNNNNGGCC	1 cut(s)	207
SmiMI	CAYNNNNRTG	1 cut(s)	789
Sse9I	AATT	2 cut(s)	173, 360
SsiI	CCGC	8 cut(s)	190, 237, 283, 295, 333, 351, 413, 434
SspI	AATATT	1 cut(s)	592
SspMI	CTAG	2 cut(s)	321, 635
StyD4I	CCNGG	2 cut(s)	210, 386
StyI	CCWWGG	1 cut(s)	320
TaiI	ACGT	2 cut(s)	156, 442
TaqI	TCGA	5 cut(s)	29, 36, 114, 165, 177
TasI	AATT	2 cut(s)	173, 360
TatI	WGTACW	1 cut(s)	81
TauI	GCSGC	2 cut(s)	192, 239
TfiI	GAWTC	2 cut(s)	584, 773
Tru1I	TTAA	1 cut(s)	737
Tru9I	TTAA	1 cut(s)	737
TseFI	GTSAC	2 cut(s)	452, 492
TseI	GCWGC	1 cut(s)	650
Tsp45I	GTSAC	2 cut(s)	452, 492
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	173
XcmI	CCANNNNNNNNNTGG	1 cut(s)	237
XmaJI	CCTAGG	1 cut(s)	320
XspI	CTAG	2 cut(s)	321, 635
ZrmI	AGTACT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.