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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G25070 |
| fragaria_vesca | FvH4_5g26850 FvH4_5g26850 |
| malus_domestica | MD04G1004600.v1.1 |
| prunus_persica | Prupe.1G004400_v2.0.a1 |
| pyrus_communis | pycom04g00470 |
| rosa_chinensis | RchiOBHm_Chr7g0217751 |
| rosa_laevigata | RLG00000002441 |
| rosa_multiflora | Rmu_sc0000202.1_g000023 Rmu_sc0006958.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00241710 |
| rosa_rugosa | Rorug07G0171000 |
| rosa_samantha | Rh7AG311700 Rh7BG303600 Rh7CG330500 Rh7DG311400 |
| rosa_wichuraiana | Rw7G026450 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 206 |
| AatII | GACGTC | 1 cut(s) | 390 |
| AccI | GTMKAC | 1 cut(s) | 849 |
| AccIII | TCCGGA | 1 cut(s) | 547 |
| AciI | CCGC | 8 cut(s) | 152, 309, 614, 630, 665, 813, 888, 965 |
| AclWI | GGATC | 3 cut(s) | 122, 248, 570 |
| AcoI | YGGCCR | 3 cut(s) | 753, 810, 1434 |
| AcsI | RAATTY | 1 cut(s) | 280 |
| AcuI | CTGAAG | 4 cut(s) | 558, 1035, 1089, 1598 |
| AcyI | GRCGYC | 3 cut(s) | 378, 387, 617 |
| AfaI | GTAC | 1 cut(s) | 462 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 34, 273, 633, 1399 |
| AgsI | TTSAA | 7 cut(s) | 140, 146, 494, 939, 1052, 1513, 1574 |
| AjnI | CCWGG | 4 cut(s) | 272, 632, 1436, 1517 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1025, 1057 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 14, 46, 179, 211 |
| AluBI | AGCT | 8 cut(s) | 149, 536, 553, 592, 718, 1358, 1558, 1579 |
| AluI | AGCT | 8 cut(s) | 149, 536, 553, 592, 718, 1358, 1558, 1579 |
| Alw21I | GWGCWC | 2 cut(s) | 555, 604 |
| Alw26I | GTCTC | 2 cut(s) | 743, 1094 |
| AlwI | GGATC | 3 cut(s) | 122, 248, 570 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 805 |
| Aor13HI | TCCGGA | 1 cut(s) | 547 |
| AoxI | GGCC | 5 cut(s) | 726, 753, 810, 1302, 1434 |
| ApeKI | GCWGC | 5 cut(s) | 715, 779, 782, 1478, 1598 |
| ApoI | RAATTY | 1 cut(s) | 280 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 191, 409 |
| AspLEI | GCGC | 1 cut(s) | 905 |
| AsuC2I | CCSGG | 1 cut(s) | 292 |
| AsuHPI | GGTGA | 2 cut(s) | 1079, 1204 |
| BalI | TGGCCA | 1 cut(s) | 1436 |
| BanII | GRGCYC | 1 cut(s) | 555 |
| Bbv12I | GWGCWC | 2 cut(s) | 555, 604 |
| BbvCI | CCTCAGC | 2 cut(s) | 102, 828 |
| BbvI | GCAGC | 5 cut(s) | 727, 766, 769, 1465, 1610 |
| BccI | CCATC | 3 cut(s) | 93, 163, 1030 |
| BceAI | ACGGC | 2 cut(s) | 678, 768 |
| BciT130I | CCWGG | 4 cut(s) | 274, 634, 1438, 1519 |
| BcnI | CCSGG | 1 cut(s) | 292 |
| BcoDI | GTCTC | 2 cut(s) | 743, 1094 |
| BfaI | CTAG | 4 cut(s) | 236, 707, 1311, 1538 |
| BfmI | CTRYAG | 2 cut(s) | 1446, 1596 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 734 |
| BlpI | GCTNAGC | 1 cut(s) | 593 |
| Bme1390I | CCNGG | 5 cut(s) | 274, 292, 634, 1438, 1519 |
| BmrFI | CCNGG | 5 cut(s) | 274, 292, 634, 1438, 1519 |
| BmsI | GCATC | 7 cut(s) | 328, 814, 832, 922, 1060, 1275, 1375 |
| BplI | GAGNNNNNCTC | 8 cut(s) | 586, 618, 787, 819, 962, 994, 1342, 1374 |
| BpmI | CTGGAG | 1 cut(s) | 1193 |
| Bpu10I | CCTNAGC | 3 cut(s) | 102, 786, 828 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 593 |
| BpuMI | CCSGG | 1 cut(s) | 292 |
| Bsa29I | ATCGAT | 2 cut(s) | 408, 1383 |
| BsaHI | GRCGYC | 3 cut(s) | 378, 387, 617 |
| BsaJI | CCNNGG | 4 cut(s) | 1020, 1437, 1518, 1563 |
| BsaWI | WCCGGW | 2 cut(s) | 547, 555 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 179, 209, 542, 572 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 34, 273, 633, 1399 |
| Bse1I | ACTGG | 5 cut(s) | 69, 464, 702, 1176, 1437 |
| BseAI | TCCGGA | 1 cut(s) | 547 |
| BseBI | CCWGG | 4 cut(s) | 274, 634, 1438, 1519 |
| BseCI | ATCGAT | 2 cut(s) | 408, 1383 |
| BseDI | CCNNGG | 4 cut(s) | 1020, 1437, 1518, 1563 |
| BseGI | GGATG | 7 cut(s) | 85, 269, 1120, 1233, 1287, 1573, 1594 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 34, 273, 633, 1399 |
| BseMII | CTCAG | 7 cut(s) | 116, 584, 800, 819, 832, 1412, 1539 |
| BseNI | ACTGG | 5 cut(s) | 69, 464, 702, 1176, 1437 |
| BseRI | GAGGAG | 7 cut(s) | 81, 84, 87, 90, 667, 670, 902 |
| BseX3I | CGGCCG | 1 cut(s) | 753 |
| BseXI | GCAGC | 5 cut(s) | 727, 766, 769, 1465, 1610 |
| BseYI | CCCAGC | 1 cut(s) | 425 |
| Bsh1285I | CGRYCG | 2 cut(s) | 361, 756 |
| BshFI | GGCC | 5 cut(s) | 728, 755, 812, 1304, 1436 |
| BshVI | ATCGAT | 2 cut(s) | 408, 1383 |
| BsiEI | CGRYCG | 2 cut(s) | 361, 756 |
| BsiHKAI | GWGCWC | 2 cut(s) | 555, 604 |
| BsiSI | CCGG | 4 cut(s) | 292, 312, 548, 556 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 34, 273, 633, 1399 |
| BsmAI | GTCTC | 2 cut(s) | 743, 1094 |
| BsmBI | CGTCTC | 1 cut(s) | 743 |
| BsnI | GGCC | 5 cut(s) | 728, 755, 812, 1304, 1436 |
| Bsp1286I | GDGCHC | 2 cut(s) | 555, 604 |
| Bsp13I | TCCGGA | 1 cut(s) | 547 |
| Bsp143I | GATC | 8 cut(s) | 127, 253, 258, 358, 562, 579, 882, 1225 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 593 |
| BspACI | CCGC | 8 cut(s) | 152, 309, 614, 630, 665, 813, 888, 965 |
| BspANI | GGCC | 5 cut(s) | 728, 755, 812, 1304, 1436 |
| BspCNI | CTCAG | 7 cut(s) | 115, 585, 799, 820, 831, 1411, 1540 |
| BspDI | ATCGAT | 2 cut(s) | 408, 1383 |
| BspEI | TCCGGA | 1 cut(s) | 547 |
| BspMAI | CTGCAG | 2 cut(s) | 1450, 1600 |
| BspPI | GGATC | 3 cut(s) | 122, 248, 570 |
| BsrI | ACTGG | 5 cut(s) | 69, 464, 702, 1176, 1437 |
| BssECI | CCNNGG | 4 cut(s) | 1020, 1437, 1518, 1563 |
| BssMI | GATC | 8 cut(s) | 127, 253, 258, 358, 562, 579, 882, 1225 |
| BssNI | GRCGYC | 3 cut(s) | 378, 387, 617 |
| BssT1I | CCWWGG | 1 cut(s) | 1020 |
| Bst2UI | CCWGG | 4 cut(s) | 274, 634, 1438, 1519 |
| Bst4CI | ACNGT | 4 cut(s) | 208, 448, 1091, 1344 |
| Bst6I | CTCTTC | 5 cut(s) | 6, 197, 717, 788, 985 |
| BstACI | GRCGYC | 3 cut(s) | 378, 387, 617 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 932 |
| BstC8I | GCNNGC | 2 cut(s) | 730, 801 |
| BstDEI | CTNAG | 9 cut(s) | 102, 593, 764, 786, 818, 828, 1398, 1484, 1548 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 32, 631, 1397 |
| BstF5I | GGATG | 7 cut(s) | 85, 269, 1120, 1233, 1287, 1573, 1594 |
| BstHHI | GCGC | 1 cut(s) | 905 |
| BstKTI | GATC | 8 cut(s) | 130, 256, 261, 361, 565, 582, 885, 1228 |
| BstMAI | GTCTC | 2 cut(s) | 743, 1094 |
| BstMBI | GATC | 8 cut(s) | 127, 253, 258, 358, 562, 579, 882, 1225 |
| BstMCI | CGRYCG | 2 cut(s) | 361, 756 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 338, 533, 581, 734, 809, 932, 1025, 1454 |
| BstNI | CCWGG | 4 cut(s) | 274, 634, 1438, 1519 |
| BstSCI | CCNGG | 5 cut(s) | 272, 290, 632, 1436, 1517 |
| BstSFI | CTRYAG | 2 cut(s) | 1446, 1596 |
| BstV1I | GCAGC | 5 cut(s) | 727, 766, 769, 1465, 1610 |
| BstX2I | RGATCY | 2 cut(s) | 127, 253 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1036 |
| BstYI | RGATCY | 2 cut(s) | 127, 253 |
| BstZI | CGGCCG | 1 cut(s) | 753 |
| Bsu15I | ATCGAT | 2 cut(s) | 408, 1383 |
| BsuRI | GGCC | 5 cut(s) | 728, 755, 812, 1304, 1436 |
| BsuTUI | ATCGAT | 2 cut(s) | 408, 1383 |
| BtgZI | GCGATG | 1 cut(s) | 379 |
| BtsCI | GGATG | 7 cut(s) | 85, 269, 1120, 1233, 1287, 1573, 1594 |
| BtsI | GCAGTG | 1 cut(s) | 604 |
| BtsIMutI | CAGTG | 4 cut(s) | 204, 444, 604, 1113 |
| Cac8I | GCNNGC | 2 cut(s) | 730, 801 |
| CaiI | CAGNNNCTG | 1 cut(s) | 805 |
| CfoI | GCGC | 1 cut(s) | 905 |
| ClaI | ATCGAT | 2 cut(s) | 408, 1383 |
| CseI | GACGC | 3 cut(s) | 386, 606, 650 |
| Csp6I | GTAC | 1 cut(s) | 461 |
| CviAII | CATG | 2 cut(s) | 40, 863 |
| CviQI | GTAC | 1 cut(s) | 461 |
| DdeI | CTNAG | 9 cut(s) | 102, 593, 764, 786, 818, 828, 1398, 1484, 1548 |
| DpnI | GATC | 8 cut(s) | 129, 255, 260, 360, 564, 581, 884, 1227 |
| DpnII | GATC | 8 cut(s) | 127, 253, 258, 358, 562, 579, 882, 1225 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 206 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 206 |
| EaeI | YGGCCR | 3 cut(s) | 753, 810, 1434 |
| EagI | CGGCCG | 1 cut(s) | 753 |
| Eam1104I | CTCTTC | 5 cut(s) | 6, 197, 717, 788, 985 |
| EarI | CTCTTC | 5 cut(s) | 6, 197, 717, 788, 985 |
| EciI | GGCGGA | 2 cut(s) | 141, 619 |
| Ecl136II | GAGCTC | 1 cut(s) | 553 |
| EclXI | CGGCCG | 1 cut(s) | 753 |
| Eco130I | CCWWGG | 1 cut(s) | 1020 |
| Eco147I | AGGCCT | 1 cut(s) | 728 |
| Eco24I | GRGCYC | 1 cut(s) | 555 |
| Eco52I | CGGCCG | 1 cut(s) | 753 |
| Eco53kI | GAGCTC | 1 cut(s) | 553 |
| Eco57I | CTGAAG | 4 cut(s) | 558, 1035, 1089, 1598 |
| EcoICRI | GAGCTC | 1 cut(s) | 553 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 32, 631, 1397 |
| EcoRI | GAATTC | 1 cut(s) | 280 |
| EcoRII | CCWGG | 4 cut(s) | 272, 632, 1436, 1517 |
| EcoT14I | CCWWGG | 1 cut(s) | 1020 |
| EcoT22I | ATGCAT | 1 cut(s) | 864 |
| EcoT38I | GRGCYC | 1 cut(s) | 555 |
| ErhI | CCWWGG | 1 cut(s) | 1020 |
| Esp3I | CGTCTC | 1 cut(s) | 743 |
| FaeI | CATG | 2 cut(s) | 43, 866 |
| FaiI | YATR | 5 cut(s) | 41, 864, 1059, 1061, 1465 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1314, 1346 |
| FatI | CATG | 2 cut(s) | 39, 862 |
| FblI | GTMKAC | 1 cut(s) | 849 |
| FokI | GGATG | 7 cut(s) | 72, 256, 1127, 1220, 1294, 1580, 1601 |
| FriOI | GRGCYC | 1 cut(s) | 555 |
| FspBI | CTAG | 4 cut(s) | 236, 707, 1311, 1538 |
| GlaI | GCGC | 1 cut(s) | 904 |
| GsaI | CCCAGC | 1 cut(s) | 429 |
| GsuI | CTGGAG | 1 cut(s) | 1193 |
| HaeIII | GGCC | 5 cut(s) | 728, 755, 812, 1304, 1436 |
| HapII | CCGG | 4 cut(s) | 292, 312, 548, 556 |
| HgaI | GACGC | 3 cut(s) | 386, 606, 650 |
| HhaI | GCGC | 1 cut(s) | 905 |
| Hin1I | GRCGYC | 3 cut(s) | 378, 387, 617 |
| Hin1II | CATG | 2 cut(s) | 43, 866 |
| Hin6I | GCGC | 1 cut(s) | 903 |
| HinP1I | GCGC | 1 cut(s) | 903 |
| HincII | GTYRAC | 2 cut(s) | 850, 1365 |
| HindII | GTYRAC | 2 cut(s) | 850, 1365 |
| HindIII | AAGCTT | 1 cut(s) | 1556 |
| HpaII | CCGG | 4 cut(s) | 292, 312, 548, 556 |
| HphI | GGTGA | 2 cut(s) | 1079, 1204 |
| Hpy166II | GTNNAC | 2 cut(s) | 850, 1365 |
| Hpy188I | TCNGA | 7 cut(s) | 76, 172, 199, 258, 821, 1535, 1564 |
| Hpy8I | GTNNAC | 2 cut(s) | 850, 1365 |
| Hpy99I | CGWCG | 4 cut(s) | 185, 380, 404, 533 |
| HpyAV | CCTTC | 3 cut(s) | 441, 631, 1195 |
| HpyCH4III | ACNGT | 4 cut(s) | 208, 448, 1091, 1344 |
| HpyCH4IV | ACGT | 1 cut(s) | 387 |
| HpyCH4V | TGCA | 9 cut(s) | 862, 947, 1073, 1187, 1217, 1288, 1321, 1448, 1598 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 338, 533, 581, 734, 809, 932, 1025, 1454 |
| HpyF3I | CTNAG | 9 cut(s) | 102, 593, 764, 786, 818, 828, 1398, 1484, 1548 |
| HpySE526I | ACGT | 1 cut(s) | 387 |
| Hsp92I | GRCGYC | 3 cut(s) | 378, 387, 617 |
| Hsp92II | CATG | 2 cut(s) | 43, 866 |
| HspAI | GCGC | 1 cut(s) | 903 |
| Kpn2I | TCCGGA | 1 cut(s) | 547 |
| Kzo9I | GATC | 8 cut(s) | 127, 253, 258, 358, 562, 579, 882, 1225 |
| LmnI | GCTCC | 6 cut(s) | 154, 550, 558, 1402, 1415, 1584 |
| Lsp1109I | GCAGC | 5 cut(s) | 727, 766, 769, 1465, 1610 |
| LweI | GCATC | 7 cut(s) | 328, 814, 832, 922, 1060, 1275, 1375 |
| MaeI | CTAG | 4 cut(s) | 236, 707, 1311, 1538 |
| MaeII | ACGT | 1 cut(s) | 387 |
| MaeIII | GTNAC | 4 cut(s) | 326, 767, 1229, 1313 |
| MalI | GATC | 8 cut(s) | 129, 255, 260, 360, 564, 581, 884, 1227 |
| MboI | GATC | 8 cut(s) | 127, 253, 258, 358, 562, 579, 882, 1225 |
| MfeI | CAATTG | 1 cut(s) | 645 |
| MflI | RGATCY | 2 cut(s) | 127, 253 |
| MhlI | GDGCHC | 2 cut(s) | 555, 604 |
| MlsI | TGGCCA | 1 cut(s) | 1436 |
| MluCI | AATT | 9 cut(s) | 64, 141, 212, 280, 645, 1040, 1047, 1062, 1630 |
| MluNI | TGGCCA | 1 cut(s) | 1436 |
| MlyI | GAGTC | 5 cut(s) | 71, 538, 845, 1469, 1501 |
| MmeI | TCCRAC | 7 cut(s) | 99, 222, 540, 940, 1261, 1326, 1606 |
| Mox20I | TGGCCA | 1 cut(s) | 1436 |
| Mph1103I | ATGCAT | 1 cut(s) | 864 |
| MroI | TCCGGA | 1 cut(s) | 547 |
| MroXI | GAANNNNTTC | 2 cut(s) | 191, 409 |
| MscI | TGGCCA | 1 cut(s) | 1436 |
| MseI | TTAA | 4 cut(s) | 317, 959, 1085, 1642 |
| Msp20I | TGGCCA | 1 cut(s) | 1436 |
| MspA1I | CMGCKG | 1 cut(s) | 718 |
| MspI | CCGG | 4 cut(s) | 292, 312, 548, 556 |
| MspR9I | CCNGG | 5 cut(s) | 274, 292, 634, 1438, 1519 |
| MunI | CAATTG | 1 cut(s) | 645 |
| MvaI | CCWGG | 4 cut(s) | 274, 634, 1438, 1519 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 338, 533, 581, 734, 809, 932, 1025, 1454 |
| NciI | CCSGG | 1 cut(s) | 292 |
| NdeII | GATC | 8 cut(s) | 127, 253, 258, 358, 562, 579, 882, 1225 |
| NlaIII | CATG | 2 cut(s) | 43, 866 |
| NmeAIII | GCCGAG | 1 cut(s) | 610 |
| NmuCI | GTSAC | 2 cut(s) | 767, 1229 |
| NsiI | ATGCAT | 1 cut(s) | 864 |
| PceI | AGGCCT | 1 cut(s) | 728 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 384, 753 |
| PdmI | GAANNNNTTC | 2 cut(s) | 191, 409 |
| PfeI | GAWTC | 7 cut(s) | 23, 109, 321, 405, 410, 1052, 1133 |
| PfoI | TCCNGGA | 1 cut(s) | 290 |
| Ple19I | CGATCG | 1 cut(s) | 361 |
| PleI | GAGTC | 5 cut(s) | 71, 538, 845, 1468, 1500 |
| PpsI | GAGTC | 5 cut(s) | 71, 538, 845, 1468, 1500 |
| Psp124BI | GAGCTC | 1 cut(s) | 555 |
| Psp6I | CCWGG | 4 cut(s) | 272, 632, 1436, 1517 |
| PspFI | CCCAGC | 1 cut(s) | 425 |
| PspGI | CCWGG | 4 cut(s) | 272, 632, 1436, 1517 |
| PstI | CTGCAG | 2 cut(s) | 1450, 1600 |
| PstNI | CAGNNNCTG | 1 cut(s) | 805 |
| PsuI | RGATCY | 2 cut(s) | 127, 253 |
| PvuI | CGATCG | 1 cut(s) | 361 |
| PvuII | CAGCTG | 1 cut(s) | 718 |
| RsaI | GTAC | 1 cut(s) | 462 |
| RsaNI | GTAC | 1 cut(s) | 461 |
| SacI | GAGCTC | 1 cut(s) | 555 |
| SalI | GTCGAC | 1 cut(s) | 848 |
| SaqAI | TTAA | 4 cut(s) | 317, 959, 1085, 1642 |
| Sau3AI | GATC | 8 cut(s) | 127, 253, 258, 358, 562, 579, 882, 1225 |
| SchI | GAGTC | 5 cut(s) | 71, 538, 845, 1469, 1501 |
| ScrFI | CCNGG | 5 cut(s) | 274, 292, 634, 1438, 1519 |
| SduI | GDGCHC | 2 cut(s) | 555, 604 |
| SfaNI | GCATC | 7 cut(s) | 328, 814, 832, 922, 1060, 1275, 1375 |
| SfcI | CTRYAG | 2 cut(s) | 1446, 1596 |
| Sse9I | AATT | 9 cut(s) | 64, 141, 212, 280, 645, 1040, 1047, 1062, 1630 |
| SseBI | AGGCCT | 1 cut(s) | 728 |
| SsiI | CCGC | 8 cut(s) | 152, 309, 614, 630, 665, 813, 888, 965 |
| SspMI | CTAG | 4 cut(s) | 236, 707, 1311, 1538 |
| SstI | GAGCTC | 1 cut(s) | 555 |
| StuI | AGGCCT | 1 cut(s) | 728 |
| StyD4I | CCNGG | 5 cut(s) | 272, 290, 632, 1436, 1517 |
| StyI | CCWWGG | 1 cut(s) | 1020 |
| TaaI | ACNGT | 4 cut(s) | 208, 448, 1091, 1344 |
| TaiI | ACGT | 1 cut(s) | 390 |
| TaqI | TCGA | 9 cut(s) | 33, 51, 180, 284, 375, 408, 747, 849, 1383 |
| TaqII | GACCGA | 1 cut(s) | 261 |
| TasI | AATT | 9 cut(s) | 64, 141, 212, 280, 645, 1040, 1047, 1062, 1630 |
| TauI | GCSGC | 6 cut(s) | 311, 617, 668, 815, 890, 968 |
| TfiI | GAWTC | 7 cut(s) | 23, 109, 321, 405, 410, 1052, 1133 |
| Tru1I | TTAA | 4 cut(s) | 317, 959, 1085, 1642 |
| Tru9I | TTAA | 4 cut(s) | 317, 959, 1085, 1642 |
| TscAI | CASTG | 4 cut(s) | 211, 451, 604, 1113 |
| TseFI | GTSAC | 2 cut(s) | 767, 1229 |
| TseI | GCWGC | 5 cut(s) | 715, 779, 782, 1478, 1598 |
| Tsp45I | GTSAC | 2 cut(s) | 767, 1229 |
| TspDTI | ATGAA | 1 cut(s) | 996 |
| TspGWI | ACGGA | 2 cut(s) | 417, 1178 |
| TspRI | CASTG | 4 cut(s) | 211, 451, 604, 1113 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 32, 631, 1397 |
| XapI | RAATTY | 1 cut(s) | 280 |
| XbaI | TCTAGA | 1 cut(s) | 706 |
| XmiI | GTMKAC | 1 cut(s) | 849 |
| XmnI | GAANNNNTTC | 2 cut(s) | 191, 409 |
| XspI | CTAG | 4 cut(s) | 236, 707, 1311, 1538 |
| ZraI | GACGTC | 1 cut(s) | 388 |
| Zsp2I | ATGCAT | 1 cut(s) | 864 |