Rh7CG096700

C3HC zinc finger-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0008062
Physical Location & Seq
Reverse (-)
7324821 .. 7326198
1378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG096700.1

Sequence Viewer

Length: 294 bp
ATGCGTGGTCGATCTTCTCCTCTGCTGTGCTCTTCTCATTCAAGACGTCTCAATAACAGGAGAGGTTGGGTCAACATAGATGTGGATACAATAGCCTGTGAATCATGTGGGGCACGCGTCCTGTTTTCTATTCCATCATCTTGGAATCAGCAGCAAGTTGAGAAGGCAGCTTTGGTATTTGGTTTAAAGCTAGACAATGGACATAAAATGCTTTGTCCATGGATTGACAATGCCTGTGATGAAATGCTGGCAGAGTTCCCGCCTACACCACGTACCTCCAGTTTTAGTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC

Protein Analysis

97

Amino Acids

10.81

Weight (kDa)

8.38

Isoelectric Point (pI)

68.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC PF07967 20 - 93 1.2e-15 NuBaID N-terminal domain (aka zf-C3HC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 49
AccII CGCG 1 cut(s) 117
AciI CCGC 1 cut(s) 260
AcyI GRCGYC 1 cut(s) 46
AfaI GTAC 1 cut(s) 274
AflIII ACRYGT 1 cut(s) 115
AgsI TTSAA 1 cut(s) 42
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 2 cut(s) 170, 190
AluI AGCT 2 cut(s) 170, 190
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 1 cut(s) 53
ApeKI GCWGC 2 cut(s) 151, 167
BaeGI GKGCMC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 32
BbvI GCAGC 2 cut(s) 163, 179
BccI CCATC 1 cut(s) 142
BciVI GTATCC 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 1 cut(s) 191
BfuI GTATCC 1 cut(s) 79
BisI GCNGC 2 cut(s) 152, 168
BlsI GCNGC 2 cut(s) 153, 169
BpmI CTGGAG 1 cut(s) 262
BsaAI YACGTR 1 cut(s) 272
BsaHI GRCGYC 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 218
BseNI ACTGG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 9
BseSI GKGCMC 1 cut(s) 115
BseXI GCAGC 2 cut(s) 163, 179
Bsh1236I CGCG 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 53
BsmBI CGTCTC 1 cut(s) 53
Bsp1286I GDGCHC 2 cut(s) 32, 115
Bsp143I GATC 1 cut(s) 11
Bsp19I CCATGG 1 cut(s) 218
BspACI CCGC 1 cut(s) 260
BspFNI CGCG 1 cut(s) 117
BspQI GCTCTTC 1 cut(s) 37
BsrI ACTGG 1 cut(s) 279
BssECI CCNNGG 1 cut(s) 218
BssMI GATC 1 cut(s) 11
BssNI GRCGYC 1 cut(s) 46
BssT1I CCWWGG 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 37
BstACI GRCGYC 1 cut(s) 46
BstBAI YACGTR 1 cut(s) 272
BstC8I GCNNGC 2 cut(s) 115, 249
BstDSI CCRYGG 1 cut(s) 218
BstFNI CGCG 1 cut(s) 117
BstKTI GATC 1 cut(s) 14
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 1 cut(s) 11
BstSLI GKGCMC 1 cut(s) 115
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 2 cut(s) 163, 179
BstXI CCANNNNNNTGG 1 cut(s) 141
BsuI GTATCC 1 cut(s) 79
BtgI CCRYGG 1 cut(s) 218
Cac8I GCNNGC 2 cut(s) 115, 249
CseI GACGC 1 cut(s) 106
Csp6I GTAC 1 cut(s) 273
CviAII CATG 2 cut(s) 105, 219
CviJI RGCY 3 cut(s) 95, 170, 190
CviKI_1 RGCY 3 cut(s) 95, 170, 190
CviQI GTAC 1 cut(s) 273
DpnI GATC 1 cut(s) 13
DpnII GATC 1 cut(s) 11
DraI TTTAAA 1 cut(s) 186
Eam1104I CTCTTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 218
Esp3I CGTCTC 1 cut(s) 53
FaeI CATG 2 cut(s) 108, 222
FaiI YATR 4 cut(s) 77, 106, 204, 220
FatI CATG 2 cut(s) 104, 218
FauI CCCGC 1 cut(s) 267
Fnu4HI GCNGC 2 cut(s) 152, 168
Fsp4HI GCNGC 2 cut(s) 152, 168
FspBI CTAG 1 cut(s) 191
GluI GCNGC 2 cut(s) 152, 168
GsuI CTGGAG 1 cut(s) 262
HgaI GACGC 1 cut(s) 106
Hin1I GRCGYC 1 cut(s) 46
Hin1II CATG 2 cut(s) 108, 222
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HinfI GANTC 2 cut(s) 101, 145
Hpy166II GTNNAC 1 cut(s) 73
Hpy188III TCNNGA 1 cut(s) 42
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 157
HpyCH4IV ACGT 2 cut(s) 46, 271
HpySE526I ACGT 2 cut(s) 46, 271
Hsp92I GRCGYC 1 cut(s) 46
Hsp92II CATG 2 cut(s) 108, 222
Kzo9I GATC 1 cut(s) 11
LguI GCTCTTC 1 cut(s) 37
LpnPI CCDG 5 cut(s) 43, 109, 134, 233, 247
Lsp1109I GCAGC 2 cut(s) 163, 179
MaeI CTAG 1 cut(s) 191
MaeII ACGT 2 cut(s) 46, 271
MalI GATC 1 cut(s) 13
MboI GATC 1 cut(s) 11
MboII GAAGA 2 cut(s) 6, 24
MhlI GDGCHC 2 cut(s) 32, 115
MluI ACGCGT 1 cut(s) 115
MnlI CCTC 3 cut(s) 30, 56, 286
MseI TTAA 1 cut(s) 185
MslI CAYNNNNRTG 1 cut(s) 80
MvnI CGCG 1 cut(s) 117
NcoI CCATGG 1 cut(s) 218
NdeII GATC 1 cut(s) 11
NlaIII CATG 2 cut(s) 108, 222
PciSI GCTCTTC 1 cut(s) 37
PfeI GAWTC 2 cut(s) 101, 145
PkrI GCNGC 2 cut(s) 153, 169
Ppu21I YACGTR 1 cut(s) 272
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
RseI CAYNNNNRTG 1 cut(s) 80
SapI GCTCTTC 1 cut(s) 37
SaqAI TTAA 1 cut(s) 185
SatI GCNGC 2 cut(s) 152, 168
Sau3AI GATC 1 cut(s) 11
SduI GDGCHC 2 cut(s) 32, 115
SetI ASST 6 cut(s) 49, 67, 172, 192, 274, 278
SmiMI CAYNNNNRTG 1 cut(s) 80
SsiI CCGC 1 cut(s) 260
SspMI CTAG 1 cut(s) 191
StyI CCWWGG 1 cut(s) 218
TaiI ACGT 2 cut(s) 49, 274
TaqI TCGA 1 cut(s) 10
TfiI GAWTC 2 cut(s) 101, 145
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TseI GCWGC 2 cut(s) 151, 167
TspDTI ATGAA 1 cut(s) 255
XspI CTAG 1 cut(s) 191
ZraI GACGTC 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.