Rh7DG278300

C3HC zinc finger-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0008062
Physical Location & Seq
Reverse (-)
30013590 .. 30015522
1933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG278300.1

Sequence Viewer

Length: 318 bp
ATGCGTGGTCGATCTTCTCCTCTGCTGTGCTCTTCTCATTCAAGACGTCTATTGCAGGTGGTAAGTGCTTTAAATTGTGCCAGGAGAGGTTGGGTCAACATAGATGTGGATACAATAGCCTGTGAATCATGTGGGGCACGCGTCCTGTTTTCTACTCCATCATCTTGGAATCAGCAGCAAGTTGAGAAGGCAGCTTTGGTATTTGGTTTAAAGCTAGACAATGGACATAAAATGCTTTGTCCATGGATTGACAATGCCTGTGATGAAATGCTGGCAGAGTTCCCGCCTACACCACGTACCTCCAGTTTTAGTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC

Protein Analysis

105

Amino Acids

11.57

Weight (kDa)

8.3

Isoelectric Point (pI)

66.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC PF07967 20 - 101 8.4e-20 NuBaID N-terminal domain (aka zf-C3HC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 46
AatII GACGTC 1 cut(s) 49
Acc36I ACCTGC 1 cut(s) 46
AccII CGCG 1 cut(s) 141
AciI CCGC 1 cut(s) 284
AcyI GRCGYC 1 cut(s) 46
AfaI GTAC 1 cut(s) 298
AflIII ACRYGT 1 cut(s) 139
AgsI TTSAA 1 cut(s) 42
AjnI CCWGG 1 cut(s) 80
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AluBI AGCT 2 cut(s) 194, 214
AluI AGCT 2 cut(s) 194, 214
Alw21I GWGCWC 1 cut(s) 32
ApeKI GCWGC 2 cut(s) 175, 191
BaeGI GKGCMC 1 cut(s) 139
Bbv12I GWGCWC 1 cut(s) 32
BbvI GCAGC 2 cut(s) 187, 203
BccI CCATC 1 cut(s) 166
BciT130I CCWGG 1 cut(s) 82
BciVI GTATCC 1 cut(s) 103
BfaI CTAG 1 cut(s) 215
BfuAI ACCTGC 1 cut(s) 46
BfuI GTATCC 1 cut(s) 103
BisI GCNGC 2 cut(s) 176, 192
BlsI GCNGC 2 cut(s) 177, 193
Bme1390I CCNGG 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 82
BpmI CTGGAG 1 cut(s) 286
BsaAI YACGTR 1 cut(s) 296
BsaHI GRCGYC 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 303
BseBI CCWGG 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 242
BseNI ACTGG 1 cut(s) 303
BseRI GAGGAG 1 cut(s) 9
BseSI GKGCMC 1 cut(s) 139
BseXI GCAGC 2 cut(s) 187, 203
Bsh1236I CGCG 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 32
Bsp1286I GDGCHC 2 cut(s) 32, 139
Bsp143I GATC 1 cut(s) 11
Bsp19I CCATGG 1 cut(s) 242
BspACI CCGC 1 cut(s) 284
BspFNI CGCG 1 cut(s) 141
BspMI ACCTGC 1 cut(s) 46
BspQI GCTCTTC 1 cut(s) 37
BsrI ACTGG 1 cut(s) 303
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 1 cut(s) 11
BssNI GRCGYC 1 cut(s) 46
BssT1I CCWWGG 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 82
Bst6I CTCTTC 1 cut(s) 37
BstACI GRCGYC 1 cut(s) 46
BstBAI YACGTR 1 cut(s) 296
BstC8I GCNNGC 2 cut(s) 139, 273
BstDSI CCRYGG 1 cut(s) 242
BstFNI CGCG 1 cut(s) 141
BstKTI GATC 1 cut(s) 14
BstMBI GATC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 80
BstSLI GKGCMC 1 cut(s) 139
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 2 cut(s) 187, 203
BstXI CCANNNNNNTGG 1 cut(s) 165
BsuI GTATCC 1 cut(s) 103
BtgI CCRYGG 1 cut(s) 242
BveI ACCTGC 1 cut(s) 46
Cac8I GCNNGC 2 cut(s) 139, 273
CseI GACGC 1 cut(s) 130
Csp6I GTAC 1 cut(s) 297
CviAII CATG 2 cut(s) 129, 243
CviJI RGCY 3 cut(s) 119, 194, 214
CviKI_1 RGCY 3 cut(s) 119, 194, 214
CviQI GTAC 1 cut(s) 297
DpnI GATC 1 cut(s) 13
DpnII GATC 1 cut(s) 11
DraI TTTAAA 2 cut(s) 72, 210
Eam1104I CTCTTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 80
EcoT14I CCWWGG 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 2 cut(s) 132, 246
FaiI YATR 4 cut(s) 101, 130, 228, 244
FatI CATG 2 cut(s) 128, 242
FauI CCCGC 1 cut(s) 291
Fnu4HI GCNGC 2 cut(s) 176, 192
Fsp4HI GCNGC 2 cut(s) 176, 192
FspBI CTAG 1 cut(s) 215
GluI GCNGC 2 cut(s) 176, 192
GsuI CTGGAG 1 cut(s) 286
HgaI GACGC 1 cut(s) 130
Hin1I GRCGYC 1 cut(s) 46
Hin1II CATG 2 cut(s) 132, 246
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 2 cut(s) 125, 169
Hpy166II GTNNAC 1 cut(s) 97
Hpy188III TCNNGA 1 cut(s) 42
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 181
HpyCH4IV ACGT 2 cut(s) 46, 295
HpyCH4V TGCA 1 cut(s) 55
HpySE526I ACGT 2 cut(s) 46, 295
Hsp92I GRCGYC 1 cut(s) 46
Hsp92II CATG 2 cut(s) 132, 246
Kzo9I GATC 1 cut(s) 11
LguI GCTCTTC 1 cut(s) 37
LpnPI CCDG 7 cut(s) 41, 67, 94, 133, 158, 257, 271
Lsp1109I GCAGC 2 cut(s) 187, 203
MaeI CTAG 1 cut(s) 215
MaeII ACGT 2 cut(s) 46, 295
MalI GATC 1 cut(s) 13
MboI GATC 1 cut(s) 11
MboII GAAGA 2 cut(s) 6, 24
MhlI GDGCHC 2 cut(s) 32, 139
MluCI AATT 1 cut(s) 73
MluI ACGCGT 1 cut(s) 139
MnlI CCTC 3 cut(s) 30, 80, 310
MseI TTAA 2 cut(s) 71, 209
MslI CAYNNNNRTG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 82
MvaI CCWGG 1 cut(s) 82
MvnI CGCG 1 cut(s) 141
NcoI CCATGG 1 cut(s) 242
NdeII GATC 1 cut(s) 11
NlaIII CATG 2 cut(s) 132, 246
PaqCI CACCTGC 1 cut(s) 46
PciSI GCTCTTC 1 cut(s) 37
PfeI GAWTC 2 cut(s) 125, 169
PkrI GCNGC 2 cut(s) 177, 193
Ppu21I YACGTR 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 80
PspGI CCWGG 1 cut(s) 80
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
RseI CAYNNNNRTG 1 cut(s) 104
SapI GCTCTTC 1 cut(s) 37
SaqAI TTAA 2 cut(s) 71, 209
SatI GCNGC 2 cut(s) 176, 192
Sau3AI GATC 1 cut(s) 11
ScrFI CCNGG 1 cut(s) 82
SduI GDGCHC 2 cut(s) 32, 139
SetI ASST 7 cut(s) 49, 60, 91, 196, 216, 298, 302
SmiMI CAYNNNNRTG 1 cut(s) 104
Sse9I AATT 1 cut(s) 73
SsiI CCGC 1 cut(s) 284
SspMI CTAG 1 cut(s) 215
StyD4I CCNGG 1 cut(s) 80
StyI CCWWGG 1 cut(s) 242
TaiI ACGT 2 cut(s) 49, 298
TaqI TCGA 1 cut(s) 10
TasI AATT 1 cut(s) 73
TfiI GAWTC 2 cut(s) 125, 169
Tru1I TTAA 2 cut(s) 71, 209
Tru9I TTAA 2 cut(s) 71, 209
TseI GCWGC 2 cut(s) 175, 191
TspDTI ATGAA 1 cut(s) 279
XspI CTAG 1 cut(s) 215
ZraI GACGTC 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.