Rw0G023270

Argininosuccinate synthase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01079
Physical Location & Seq
Reverse (-)
126945 .. 128772
1828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G023270.1

Sequence Viewer

Length: 1326 bp
ATGTATCCTGTGAATCAACCACAACGACAGGTCGAGGCTCAATTGAAGAAGAAGATGATGCCGAACCAATTCAGATCTTCAATCGTTTACCTTTGCGAATGGATTGCAGAGCCAACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGAGACGCTCAGAAGCTCTGTCACTGCCACTATGGCTCAAGTTGGGGGCAAGAAAGAGTGAGCTTCAGGGGAATGCATTTGCGGGTTTGAGTATCAATGGAGGTGTAACTAGAGCTCGCAACCAAACAAAAGTAGCTGGATCTACAAAGGAAAGAGGATTACGTGGCAAATTGAACAAGGTTGTTCTGGCCTATAGTGGTGGCTTAGACACGGAGAACTATGGTTGTGAAGTTGTTTGCTTCACGGCCGACGTGGGTCAAGGTATAAAAGAATTGGATGGTCTGGAACAGAAGGCAAAGGCGAGTGGGGCTTGTCAGTTAGTAGTGAAGGATCTGAAGGAGGAGTTTGTAGAAGACTATATATTCCCTTGCTTGCGAGCTGGTGCAATCTATGAGAGGAAATACTTGCTGGGGACCTCAATGGCCCGTCCTGTTATTGCTAAGGCCATGGTAGATGTTGCCAAAGTAGTTGGAGCTGATGCTGTCGCTCATGGATGCACAGGGAAAGGAAATGATCAGGTTCGGTTTGAGCTGACATTTTTTGCTCTCGACCCCAAACTTAATGTGGGTGATATTTTGGAAGACCCAGAAAATGAGCCGAAGAAGGATATGTTCATGTTATCTTGTGTTGATATCGGGATTGTTTCAGGAATTCCAGTTTCAGTCGATGGACAAGAGCTTTCACCAGCTTCTTTGCTTACGAAGCTTAATGAGATTGGCGGAAGACACGGAATTGGTCGTATTGACATGGTTGAAAACCGTCTTGTTGGTATGAAGAGCCGTGGAGTCTATGAAACTCCTGGAGGCACTATCCTATTCGCTGCTGCAAGAGAGTTGGAGTCCTTAACTTTGGATCGAGAAACAATGCAAGTTAAAGACTCGCTTGCCCTCAAATATGCAGAGCTAGTCTATGCAGGCAGGTGGTTCGACCCACTTCGTGAGTCCATGGATGCATTCATGGAGAAAATCTCAGAGACAACAACGGGATCAGTAACTCTAAAGTTGTACAAGGGTTCGATCACTGTAACTAGCCGTAAGAGTCCATATAGCCTGTATAGGCAAGACATCTCTTCATTTGAGAGCGGAGATGTGTATGATCAAGCCGATGTAGCTGGGTTTATTAGGCTATATGGTCTCCCCATGAGGGTGTGGGCAATGCTTAAGGAGCGGATCTAG

Protein Analysis

441

Amino Acids

48.52

Weight (kDa)

8.01

Isoelectric Point (pI)

29.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arginosuc_synth PF00764 110 - 239 4.3e-49 Arginosuccinate synthase N-terminal HUP domain
Arginosuc_syn_C PF20979 240 - 433 1.6e-66 Arginosuccinate synthase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1059
Acc36I ACCTGC 1 cut(s) 1059
AccBSI CCGCTC 2 cut(s) 1233, 1318
AciI CCGC 4 cut(s) 233, 870, 1233, 1318
AclWI GGATC 4 cut(s) 298, 489, 1011, 1144
AcoI YGGCCR 1 cut(s) 396
AcsI RAATTY 1 cut(s) 801
AcuI CTGAAG 2 cut(s) 200, 506
AdeI CACNNNGTG 1 cut(s) 1088
AfaI GTAC 1 cut(s) 1157
AfiI CCNNNNNNNGG 1 cut(s) 1294
AflII CTTAAG 1 cut(s) 1310
AgsI TTSAA 4 cut(s) 46, 81, 325, 905
AjiI CACGTC 1 cut(s) 403
AjnI CCWGG 1 cut(s) 949
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 3 cut(s) 148, 1118, 1289
AlwI GGATC 4 cut(s) 298, 489, 1011, 1144
AoxI GGCC 4 cut(s) 339, 396, 573, 594
ApeKI GCWGC 2 cut(s) 971, 974
ApoI RAATTY 1 cut(s) 801
Asp700I GAANNNNTTC 1 cut(s) 68
AspS9I GGNCC 2 cut(s) 564, 574
AsuHPI GGTGA 2 cut(s) 731, 825
AvaII GGWCC 1 cut(s) 564
BanII GRGCYC 1 cut(s) 268
BbsI GAAGAC 3 cut(s) 510, 738, 880
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 2 cut(s) 958, 961
BccI CCATC 2 cut(s) 422, 812
BceAI ACGGC 3 cut(s) 411, 915, 1167
BcgI CGANNNNNNTGC 4 cut(s) 86, 120, 1057, 1091
BciT130I CCWGG 1 cut(s) 951
BciVI GTATCC 1 cut(s) 15
BclI TGATCA 2 cut(s) 664, 1246
BcoDI GTCTC 3 cut(s) 148, 1118, 1289
BfaI CTAG 4 cut(s) 261, 1055, 1179, 1324
BfmI CTRYAG 1 cut(s) 343
BfrI CTTAAG 1 cut(s) 1310
BfuAI ACCTGC 1 cut(s) 1059
BfuI GTATCC 1 cut(s) 15
BglI GCCNNNNNGGC 1 cut(s) 184
BglII AGATCT 1 cut(s) 74
BisI GCNGC 2 cut(s) 972, 975
BlsI GCNGC 2 cut(s) 973, 976
Bme1390I CCNGG 1 cut(s) 951
Bme18I GGWCC 1 cut(s) 564
BmgBI CACGTC 1 cut(s) 403
BmgT120I GGNCC 2 cut(s) 564, 574
BmiI GGNNCC 1 cut(s) 565
BmrFI CCNGG 1 cut(s) 951
BmsI GCATC 4 cut(s) 48, 619, 635, 1090
BoxI GACNNNNGTC 1 cut(s) 405
BpiI GAAGAC 3 cut(s) 510, 738, 880
BplI GAGNNNNNCTC 4 cut(s) 101, 133, 1103, 1135
BpmI CTGGAG 1 cut(s) 972
Bpu10I CCTNAGC 1 cut(s) 591
BpuEI CTTGAG 1 cut(s) 173
BsaAI YACGTR 1 cut(s) 314
BsaI GGTCTC 1 cut(s) 1289
BsaJI CCNNGG 3 cut(s) 597, 931, 1095
Bsc4I CCNNNNNNNGG 1 cut(s) 1294
Bse1I ACTGG 1 cut(s) 806
Bse3DI GCAATG 1 cut(s) 1311
BseBI CCWGG 1 cut(s) 951
BseDI CCNNGG 3 cut(s) 597, 931, 1095
BseGI GGATG 3 cut(s) 433, 650, 1105
BseLI CCNNNNNNNGG 1 cut(s) 1294
BseMI GCAATG 1 cut(s) 1311
BseMII CTCAG 2 cut(s) 174, 1134
BseNI ACTGG 1 cut(s) 806
BseRI GAGGAG 1 cut(s) 506
BseX3I CGGCCG 1 cut(s) 396
BseXI GCAGC 2 cut(s) 958, 961
BseYI CCCAGC 2 cut(s) 559, 1262
Bsh1285I CGRYCG 1 cut(s) 399
BshFI GGCC 4 cut(s) 341, 398, 575, 596
BsiEI CGRYCG 1 cut(s) 399
BsiHKAI GWGCWC 1 cut(s) 268
BslFI GGGAC 1 cut(s) 577
BslI CCNNNNNNNGG 1 cut(s) 1294
BsmAI GTCTC 3 cut(s) 148, 1118, 1289
BsmBI CGTCTC 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 577
BsmI GAATGC 2 cut(s) 229, 1103
BsnI GGCC 4 cut(s) 341, 398, 575, 596
Bso31I GGTCTC 1 cut(s) 1289
Bsp1286I GDGCHC 1 cut(s) 268
Bsp1407I TGTACA 1 cut(s) 1155
Bsp143I GATC 9 cut(s) 74, 290, 481, 664, 1003, 1136, 1167, 1246, 1320
Bsp19I CCATGG 2 cut(s) 597, 1095
BspACI CCGC 4 cut(s) 233, 870, 1233, 1318
BspANI GGCC 4 cut(s) 341, 398, 575, 596
BspCNI CTCAG 2 cut(s) 173, 1133
BspLI GGNNCC 1 cut(s) 565
BspMI ACCTGC 1 cut(s) 1059
BspPI GGATC 4 cut(s) 298, 489, 1011, 1144
BspQI GCTCTTC 1 cut(s) 920
BspTI CTTAAG 1 cut(s) 1310
BspTNI GGTCTC 1 cut(s) 1289
BsrBI CCGCTC 2 cut(s) 1233, 1318
BsrDI GCAATG 1 cut(s) 1311
BsrGI TGTACA 1 cut(s) 1155
BsrI ACTGG 1 cut(s) 806
BssECI CCNNGG 3 cut(s) 597, 931, 1095
BssMI GATC 9 cut(s) 74, 290, 481, 664, 1003, 1136, 1167, 1246, 1320
BssT1I CCWWGG 2 cut(s) 597, 1095
Bst2UI CCWGG 1 cut(s) 951
Bst4CI ACNGT 2 cut(s) 911, 1174
Bst6I CTCTTC 2 cut(s) 920, 1225
BstAFI CTTAAG 1 cut(s) 1310
BstAUI TGTACA 1 cut(s) 1155
BstBAI YACGTR 1 cut(s) 314
BstC8I GCNNGC 5 cut(s) 268, 524, 528, 1035, 1066
BstDEI CTNAG 4 cut(s) 160, 355, 591, 1120
BstDSI CCRYGG 3 cut(s) 597, 931, 1095
BstF5I GGATG 3 cut(s) 433, 650, 1105
BstKTI GATC 9 cut(s) 77, 293, 484, 667, 1006, 1139, 1170, 1249, 1323
BstMAI GTCTC 3 cut(s) 148, 1118, 1289
BstMBI GATC 9 cut(s) 74, 290, 481, 664, 1003, 1136, 1167, 1246, 1320
BstMCI CGRYCG 1 cut(s) 399
BstMWI GCNNNNNNNGC 5 cut(s) 184, 458, 853, 1259, 1315
BstNI CCWGG 1 cut(s) 951
BstPAI GACNNNNGTC 1 cut(s) 405
BstSCI CCNGG 1 cut(s) 949
BstSFI CTRYAG 1 cut(s) 343
BstV1I GCAGC 2 cut(s) 958, 961
BstV2I GAAGAC 3 cut(s) 510, 738, 880
BstX2I RGATCY 4 cut(s) 74, 290, 481, 1320
BstYI RGATCY 4 cut(s) 74, 290, 481, 1320
BstZI CGGCCG 1 cut(s) 396
BsuI GTATCC 1 cut(s) 15
BsuRI GGCC 4 cut(s) 341, 398, 575, 596
BtgI CCRYGG 3 cut(s) 597, 931, 1095
BtrI CACGTC 1 cut(s) 403
BtsCI GGATG 3 cut(s) 433, 650, 1105
BtsI GCAGTG 1 cut(s) 173
BtsIMutI CAGTG 2 cut(s) 173, 1170
BveI ACCTGC 1 cut(s) 1059
Cac8I GCNNGC 5 cut(s) 268, 524, 528, 1035, 1066
Cfr13I GGNCC 2 cut(s) 564, 574
CseI GACGC 1 cut(s) 165
Csp6I GTAC 1 cut(s) 1156
CviAII CATG 7 cut(s) 598, 641, 766, 898, 1096, 1108, 1291
CviQI GTAC 1 cut(s) 1156
DdeI CTNAG 4 cut(s) 160, 355, 591, 1120
DpnI GATC 9 cut(s) 76, 292, 483, 666, 1005, 1138, 1169, 1248, 1322
DpnII GATC 9 cut(s) 74, 290, 481, 664, 1003, 1136, 1167, 1246, 1320
DraIII CACNNNGTG 1 cut(s) 1088
EaeI YGGCCR 1 cut(s) 396
EagI CGGCCG 1 cut(s) 396
Eam1104I CTCTTC 2 cut(s) 920, 1225
EarI CTCTTC 2 cut(s) 920, 1225
EciI GGCGGA 1 cut(s) 885
Ecl136II GAGCTC 1 cut(s) 266
EclXI CGGCCG 1 cut(s) 396
Eco130I CCWWGG 2 cut(s) 597, 1095
Eco24I GRGCYC 1 cut(s) 268
Eco31I GGTCTC 1 cut(s) 1289
Eco32I GATATC 1 cut(s) 784
Eco47I GGWCC 1 cut(s) 564
Eco52I CGGCCG 1 cut(s) 396
Eco53kI GAGCTC 1 cut(s) 266
Eco57I CTGAAG 2 cut(s) 200, 506
EcoICRI GAGCTC 1 cut(s) 266
EcoO109I RGGNCCY 1 cut(s) 564
EcoRI GAATTC 1 cut(s) 801
EcoRII CCWGG 1 cut(s) 949
EcoRV GATATC 1 cut(s) 784
EcoT14I CCWWGG 2 cut(s) 597, 1095
EcoT22I ATGCAT 2 cut(s) 229, 1105
EcoT38I GRGCYC 1 cut(s) 268
ErhI CCWWGG 2 cut(s) 597, 1095
Esp3I CGTCTC 1 cut(s) 148
FaeI CATG 7 cut(s) 601, 644, 769, 901, 1099, 1111, 1294
FalI AAGNNNNNCTT 2 cut(s) 1017, 1049
FaqI GGGAC 1 cut(s) 577
FatI CATG 7 cut(s) 597, 640, 765, 897, 1095, 1107, 1290
FauI CCCGC 1 cut(s) 226
FbaI TGATCA 2 cut(s) 664, 1246
Fnu4HI GCNGC 2 cut(s) 972, 975
FokI GGATG 3 cut(s) 440, 657, 1112
FriOI GRGCYC 1 cut(s) 268
Fsp4HI GCNGC 2 cut(s) 972, 975
FspBI CTAG 4 cut(s) 261, 1055, 1179, 1324
GluI GCNGC 2 cut(s) 972, 975
GsaI CCCAGC 2 cut(s) 563, 1266
GsuI CTGGAG 1 cut(s) 972
HaeIII GGCC 4 cut(s) 341, 398, 575, 596
HgaI GACGC 1 cut(s) 165
Hin1II CATG 7 cut(s) 601, 644, 769, 901, 1099, 1111, 1294
HindIII AAGCTT 1 cut(s) 854
HinfI GANTC 6 cut(s) 13, 936, 989, 1028, 1091, 1189
HphI GGTGA 2 cut(s) 731, 825
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 4 cut(s) 74, 163, 486, 1123
Hpy188III TCNNGA 6 cut(s) 434, 698, 787, 798, 1007, 1088
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 1 cut(s) 404
HpyAV CCTTC 4 cut(s) 436, 472, 481, 748
HpyCH4III ACNGT 2 cut(s) 911, 1174
HpyCH4IV ACGT 2 cut(s) 313, 402
HpyCH4V TGCA 9 cut(s) 107, 227, 536, 648, 977, 1018, 1049, 1064, 1103
HpyF10VI GCNNNNNNNGC 5 cut(s) 184, 458, 853, 1259, 1315
HpyF3I CTNAG 4 cut(s) 160, 355, 591, 1120
HpySE526I ACGT 2 cut(s) 313, 402
Hsp92II CATG 7 cut(s) 601, 644, 769, 901, 1099, 1111, 1294
Ksp22I TGATCA 2 cut(s) 664, 1246
Kzo9I GATC 9 cut(s) 74, 290, 481, 664, 1003, 1136, 1167, 1246, 1320
LguI GCTCTTC 1 cut(s) 920
LmnI GCTCC 2 cut(s) 623, 1315
Lsp1109I GCAGC 2 cut(s) 958, 961
LweI GCATC 4 cut(s) 48, 619, 635, 1090
MaeI CTAG 4 cut(s) 261, 1055, 1179, 1324
MaeII ACGT 2 cut(s) 313, 402
MaeIII GTNAC 4 cut(s) 171, 256, 1141, 1174
MalI GATC 9 cut(s) 76, 292, 483, 666, 1005, 1138, 1169, 1248, 1322
MbiI CCGCTC 2 cut(s) 1233, 1318
MboI GATC 9 cut(s) 74, 290, 481, 664, 1003, 1136, 1167, 1246, 1320
MfeI CAATTG 1 cut(s) 41
MflI RGATCY 4 cut(s) 74, 290, 481, 1320
MhlI GDGCHC 1 cut(s) 268
MluCI AATT 6 cut(s) 41, 68, 320, 422, 801, 882
MlyI GAGTC 5 cut(s) 945, 998, 1022, 1100, 1198
MmeI TCCRAC 2 cut(s) 601, 966
Mph1103I ATGCAT 2 cut(s) 229, 1105
MroXI GAANNNNTTC 1 cut(s) 68
MseI TTAA 5 cut(s) 711, 858, 995, 1023, 1311
MslI CAYNNNNRTG 1 cut(s) 1295
MspCI CTTAAG 1 cut(s) 1310
MspR9I CCNGG 1 cut(s) 951
MunI CAATTG 1 cut(s) 41
Mva1269I GAATGC 2 cut(s) 229, 1103
MvaI CCWGG 1 cut(s) 951
MwoI GCNNNNNNNGC 5 cut(s) 184, 458, 853, 1259, 1315
NcoI CCATGG 2 cut(s) 597, 1095
NdeII GATC 9 cut(s) 74, 290, 481, 664, 1003, 1136, 1167, 1246, 1320
NlaIII CATG 7 cut(s) 601, 644, 769, 901, 1099, 1111, 1294
NlaIV GGNNCC 1 cut(s) 565
NmuCI GTSAC 1 cut(s) 171
NsiI ATGCAT 2 cut(s) 229, 1105
PaqCI CACCTGC 1 cut(s) 1059
PciSI GCTCTTC 1 cut(s) 920
PctI GAATGC 2 cut(s) 229, 1103
PdmI GAANNNNTTC 1 cut(s) 68
PfeI GAWTC 1 cut(s) 13
PfoI TCCNGGA 1 cut(s) 949
PkrI GCNGC 2 cut(s) 973, 976
PleI GAGTC 5 cut(s) 944, 997, 1022, 1099, 1197
PpsI GAGTC 5 cut(s) 944, 997, 1022, 1099, 1197
Ppu21I YACGTR 1 cut(s) 314
PpuMI RGGWCCY 1 cut(s) 564
PshAI GACNNNNGTC 1 cut(s) 405
Psp124BI GAGCTC 1 cut(s) 268
Psp5II RGGWCCY 1 cut(s) 564
Psp6I CCWGG 1 cut(s) 949
PspFI CCCAGC 2 cut(s) 559, 1262
PspGI CCWGG 1 cut(s) 949
PspN4I GGNNCC 1 cut(s) 565
PspPI GGNCC 2 cut(s) 564, 574
PspPPI RGGWCCY 1 cut(s) 564
PsuI RGATCY 4 cut(s) 74, 290, 481, 1320
RsaI GTAC 1 cut(s) 1157
RsaNI GTAC 1 cut(s) 1156
RseI CAYNNNNRTG 1 cut(s) 1295
SacI GAGCTC 1 cut(s) 268
SapI GCTCTTC 1 cut(s) 920
SaqAI TTAA 5 cut(s) 711, 858, 995, 1023, 1311
SatI GCNGC 2 cut(s) 972, 975
Sau3AI GATC 9 cut(s) 74, 290, 481, 664, 1003, 1136, 1167, 1246, 1320
Sau96I GGNCC 2 cut(s) 564, 574
SchI GAGTC 5 cut(s) 945, 998, 1022, 1100, 1198
ScrFI CCNGG 1 cut(s) 951
SduI GDGCHC 1 cut(s) 268
SfaNI GCATC 4 cut(s) 48, 619, 635, 1090
SfcI CTRYAG 1 cut(s) 343
SinI GGWCC 1 cut(s) 564
SmiMI CAYNNNNRTG 1 cut(s) 1295
SmlI CTYRAG 2 cut(s) 188, 1310
SmoI CTYRAG 2 cut(s) 188, 1310
Sse9I AATT 6 cut(s) 41, 68, 320, 422, 801, 882
SsiI CCGC 4 cut(s) 233, 870, 1233, 1318
SspMI CTAG 4 cut(s) 261, 1055, 1179, 1324
SstI GAGCTC 1 cut(s) 268
StyD4I CCNGG 1 cut(s) 949
StyI CCWWGG 2 cut(s) 597, 1095
TaaI ACNGT 2 cut(s) 911, 1174
TaiI ACGT 2 cut(s) 316, 405
TaqI TCGA 6 cut(s) 33, 699, 816, 1006, 1077, 1166
TasI AATT 6 cut(s) 41, 68, 320, 422, 801, 882
TatI WGTACW 1 cut(s) 1155
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 5 cut(s) 711, 858, 995, 1023, 1311
Tru9I TTAA 5 cut(s) 711, 858, 995, 1023, 1311
TscAI CASTG 2 cut(s) 180, 1177
TseFI GTSAC 1 cut(s) 171
TseI GCWGC 2 cut(s) 971, 974
Tsp45I GTSAC 1 cut(s) 171
TspDTI ATGAA 5 cut(s) 754, 938, 957, 1096, 1212
TspGWI ACGGA 2 cut(s) 377, 894
TspRI CASTG 2 cut(s) 180, 1177
Vha464I CTTAAG 1 cut(s) 1310
VpaK11BI GGWCC 1 cut(s) 564
XapI RAATTY 1 cut(s) 801
XcmI CCANNNNNNNNNTGG 1 cut(s) 712
XmnI GAANNNNTTC 1 cut(s) 68
XspI CTAG 4 cut(s) 261, 1055, 1179, 1324
Zsp2I ATGCAT 2 cut(s) 229, 1105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.