Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0011400

Physical Location & Seq

Genomic Coordinates Reverse (-)

64761552 .. 64773759

Gene Structure 12208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G037000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4095 bp

ATGCAAAACGCCGTCGTCTTATTCAAATTACCTTATTTGCCACCGTCACGTCTCCTCCCACTTCATTATCACCATCACTCGCTAATCATTAGACCCAAAAAACCGAGCAGAGAGAGACGAAGACCAAGAGAGACCGAGTGGAGTGATCGCAGTAGAACCAGTAGCGTTAGGATTAGGGCAATGCCTTGCTCTGCGATTAGCGGCGGCGGTAGCGACGGTAATGGTTCTCTGCGTAATTTCAAGCTCAACGAGTCCACGTTCTTAGCCTCGCTCATGCCGAAGAAGGAGATCGGCGCCGATCGATTCGTCGAGGCTCATCCGAATTACGACGGCCGCGGCGTCGTTATTGCTATCTTCGATTCTGGAGTGGACCCGGCTGCTGCTGGATTACAGGTTACGTCAGATGGAAAGCCGAAAATTCTAGATGTTCTTGACTGCACTGGGAGTGGAGATGTTGATACTTCAAAGGTGGTGAAGGCTGATGAGAACGGTTGCATACCTGGAGCTTCAGGGGCATCTCTGCACGTCAACTCTTCATGGAAAAATCCTTCTGGTGAATGGCACGTGGGTTATAAGTTGGTTTACGAGCTATTTACTGACACATTGACTTCCCGCTTGAAGAGAGAAAGAAGGAAAAAATGGGACGAACAAAACCAAGAGGAAATTGCTAAGGCTGTTAAGCATCTTCATGAATTTGACCAGAAACACATTAGAGCGGAGGATGCTAACTTGAAAAGGGCTCGGGAGGACCTGCAAAACAGAGTTGATTACCTACAAAAGCAAGCTGATAGCTATGATGACAAAGGGCCTGTCATAGATGCTGTTGTATGGCATGATGGAGAAGTATGGAGGGTTGCCATTGACACACAGACTCTTGAGGATGACCCTGATTGTGGAAAACTCGCTGACTTTGTGCCCCTAACTAATTATAGGATAGAACGAAAGTATGGCGTTTTCAGCAAATTGGATGCCTGTACGTTTGTTGTTAATGTGTATGATGAAGGGAAGATATTGAGTATTGTAACAGATTGCTCTCCCCATGGCACACATGTTGCTGGTATTGCTACTGCTTTCCATGCGAAGGAGCCCATGTTGAATGGAGTTGCACCTGGAGCACAAGTTATATCTTGTAAAATTGGGGATGCACGCTTAGGTTCAATGGAGACAGGAACTGGGCTGACTCGAGCTTTGATTGCTGCTGTGGAGCATAAATGTGATCTGATCAACATGAGCTATGGAGAACCAGCATTACTGCCAAACTATGGGCGCTTTGTTGACCTCGTTAATGAAGCTGTGAACAAGCACCGTCTGGTATTTGTGAGTAGTGCCGGCAATAGTGGGCCGGCATTGAGCACTGTTGGGGCACCTGGTGGTACCACATCAAGCATTATAGGAGTTGGTGCATATGTATCTCCTGCAATGGCTGCTGGTGCTCATTGTGTAGTTGAAGCCCCCGGTGAAGGTCTTGAATACACTTGGTCTAGCCGAGGACCAGCTGCTGACGGAGATCTTGGTGTCTGTATTAGTGCTCCTGGTGCAGCTATTGCTCCTGTTCCTACGTGGACCCTCCAACGACGGATGCTCATGAATGGAACATCAATGGCATCCCCATCTGCTTGTGGTGGAATTGCACTACTCATAAGTGCATTGAAGGCTGAGGGTATTTCTGTGAGTCCATATAGTGTAAGGAAGGCTCTTGAAAATACATCTGTTCCAGTAGGCAGTTTGCCAGAAGATAAATTATCAACTGGGCAAGGACTGATGCAAGTTGACAAGGCACATGAATACCTAAAGCAGTCTCGGGATGTACCATCTGTCTGGTATCAGATAAAGATATACCAATCTGGTAAAACAACTCCTACATCACGAGGTATTTACTTAAGGGAGGCTAGTGCTTGCCAAAAATCTACCGAGTGGACAGTGCAAGTTGAACCAAAATTTCATGAGGGTGCGAGTAATTTAGAAGAATTGGTTCCTTTTGAGGAGTTTGTGAGAGCTCCTGAGTTTCTCCTTCTTACTCATAATGGCCGTAGCTTCAACATAGTTGTAAATCCTACCAACCTTAGTGAAGGTCTGCACTATTATGAACTATATGGTGTTGATTGCAAAGCACCTTGGCGCGGCCCTCTTTTCAGAATCCCAATTACTATAACAAAGCCAATCACTGTCATAAGTCGACCTCCACTATATTCATTTTCGAAGTTGTCTTTTTTGCCAGGCCACATAGAAAGGAGATTTATTGAAGTACCTCTTGGTGCCACATGGGTTGAAGCAACCATGCAAACATCAGGATTTGATACAACACGAAGATTTTTTGTTGACTCTGTTCAGCTTTGTCCCTTACAAAGACCTCGTAAGTGGGAGAGTGTTGTAACATTCTCTTCGCCTGCTGCCAAAAGCTTTTCATTTCCTGTTGTGGGTGGTCAGACAATGGAATTAGCTATAGCTCAGTTTTGGTCAAGTGGCATAGGAAGCAACGAAACAACTTGTGTGGATTTTGAGATTGTGTTTCATGGGATTAATGTTAATAAAGAGGAACTAGTGCTTGATGGAAGTGAGGCACCAGTAAGAATTGAAGCTGAAGCTCTACTAGCATCCGAGAAACTTGCACCTGCTGCTACTCTAAGCAAGATCAGAATTCCATATCGACCAGTTGCTGCTGAACTTTGTTCTCTTCCAACAGATCGTGACAAACTACCCTCAGAAAAACGTATTTTGGCGCTGACATTAACTTACAAATTCAAATTGGAAGATGGAGCTGAAGTAAAACCTCAAGTTCCATTACTTAACAATCGCATATATGATACTAAATTTGAGTCTCAGTTTTATATGATCTCTGATGCAAACAAGCGTGTATATGCAACGGGTGAAGCTTATCCAAGCTCTTCAAAACTGCCCAAAGGCGAATACACTTTACAGCTATATCTTAGGCACGAAAACATGCAATATCTGGAAAAATTGAAGCAGCTGGTTTTGTTCATTGAAAGAAAATTGGAAGAGAAGGATGTAATGCGTTTGAGTTTTTTCTCTCAACCGGATGGCCCTGTGATGGGAAATGGTGCTTATAAGTCCTCAGTTTTAGTTCCAGGGAAAAAAGAAGCAATCTATTTGGGCCCACCATCCAAAGACAAGCTCCTAAAGTTTTCTCCGCAAGGATCTGTTTTGCTTGGAGCTATCTCCTATGGGAAGCTATCATATGCTGAAAAAGGACAAGGGAAAGATCCGCAAAAGAACCCGGTGTCTTATCAGATTTCTTATATTGTGCCACCGAATAAGATGGATGAAGACAAAGGAAAAGGTTCTTCTGCTTCCACCAAAGCTGTTTCTGAACGTTTAGAAGAAGAGGTTCGAGATGCGAAGATTAAAGTTCTTACAAGCCTCAAACATGACAATGAAGAAGAACGCTCAGAGTGGAACAAATTATCTACCTCTCTTAAGTCTGAATACCCAAAACACACCCCATTGCTTGCAAAGATTTTGGAAGGTTTGCTGTCTCGAAACAGTGTCGAGGACAAAATCTGTCATGACAAAGAGGTTATTGATGCAGCAAATGAGGTTGTTGATAGTATTGACAGAGATGAGCTAGCAAAATTTTTTTCACTTAGAACTGATCCCGAAGATGAGGAGGCAGAGAAAAATAAAAAGAAGATGGAGACCACTCGTGATCAGTTAGCAGAGGCATTGTACCAAAAAGGACTAGCACTGGCAGATATTTTGTCTTTACAGGGGGATAAGCCTTCGGCGTCGGAAGTAACTGAAGGTTCAAAAGAGGCAGACAAGACTGCTGACTCTGGACCAGGCTCTGGTGGCCTGCTTGACCGCTTTGAAGACACTTTTAAAGAACTTCAAAAATGGGTCGAAGTGAAATCCTCTAAATACGGAATCCTTTCAGTAACACGTGAGAAACATCATGGAAGGCTTGGAACAGCACTCAAGGTCTTGAATGACATAATTCAAGAGAATACGGAGCCTCCGAAGAAGAAGCTTTACGAAGAAAAGCTGTCTCTGCTTGAAGAGATCGGGTGGCAGCACTTGGTGACATATGAGAGACAATGGATGCATGTGCGCTTTCCACCAAGTTTACCTCTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004175 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0008240 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0016567 GO:0016604 GO:0016787 GO:0017171 GO:0019538 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044451 GO:0044464 GO:0070011 GO:0070013 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S8 TPPII

Protein Analysis

1364

Amino Acids

150.88

Weight (kDa)

6.5

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S8	PF00082	111 - 574	2.6e-44	Subtilase family
TPPII_Ig-like-1	PF21223	621 - 717	2e-19	Tripeptidyl-peptidase II, first Ig-like domain
TPPII_GBD	PF21316	737 - 821	2e-15	TPPII, galactose-binding domain-like
TPPII	PF12580	863 - 1047	1.2e-59	Tripeptidyl peptidase II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20850
fragaria_vesca	FvH4_7g29630 FvH4_7g29630 FvH4_7g29630
malus_domestica	MD01G1203100.v1.1 MD07G1272600.v1.1
prunus_persica	Prupe.2G295900_v2.0.a1 Prupe.2G295900_v2.0.a1
pyrus_communis	pycom01g21240 pycom07g24900
rosa_chinensis	RchiOBHm_Chr1g0377641
rosa_laevigata	RLG00000026509
rosa_multiflora	Rmu_sc0002832.1_g000013
rosa_roxburghii	Rroxscaffold_4G00281150
rosa_rugosa	Rorug01G0403900
rosa_samantha	Rh1AG428700 Rh1BG380700 Rh1CG394700 Rh1DG411700
rosa_wichuraiana	Rw1G037000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	573, 3066
AarI	CACCTGC	1 cut(s)	2620
Acc36I	ACCTGC	2 cut(s)	759, 2620
Acc65I	GGTACC	1 cut(s)	1373
AccB1I	GGYRCC	5 cut(s)	293, 1363, 1373, 2255, 2560
AccB7I	CCANNNNNTGG	2 cut(s)	1262, 3803
AccBSI	CCGCTC	1 cut(s)	716
AccI	GTMKAC	1 cut(s)	2176
AccII	CGCG	2 cut(s)	336, 2121
AclI	AACGTT	1 cut(s)	3331
AclWI	GGATC	3 cut(s)	3163, 3215, 3605
AcoI	YGGCCR	2 cut(s)	331, 2026
AcsI	RAATTY	7 cut(s)	417, 692, 1937, 2637, 2738, 2810, 3590
AcuI	CTGAAG	4 cut(s)	492, 2601, 2781, 3777
AcvI	CACGTG	2 cut(s)	565, 3899
AcyI	GRCGYC	3 cut(s)	294, 339, 3743
AdeI	CACNNNGTG	2 cut(s)	1370, 4036
AfaI	GTAC	5 cut(s)	976, 1375, 1809, 2247, 3686
AfiI	CCNNNNNNNGG	9 cut(s)	893, 1081, 1262, 1460, 2120, 2417, 3049, 3050, 3803
AflII	CTTAAG	2 cut(s)	1879, 3434
AflIII	ACRYGT	2 cut(s)	1048, 3896
AhlI	ACTAGT	1 cut(s)	2539
AjiI	CACGTC	2 cut(s)	50, 526
AjnI	CCWGG	7 cut(s)	499, 1108, 1366, 1531, 2215, 3085, 3796
AjuI	GAANNNNNNNTTGG	2 cut(s)	2235, 2267
Alw21I	GWGCWC	5 cut(s)	1117, 1355, 1435, 1531, 1999
AlwI	GGATC	3 cut(s)	3163, 3215, 3605
AlwNI	CAGNNNCTG	4 cut(s)	1172, 1499, 2657, 3803
Ama87I	CYCGRG	3 cut(s)	741, 1182, 1800
AoxI	GGCC	9 cut(s)	331, 806, 1340, 2026, 2122, 2218, 3040, 3112, 3808
ApaI	GGGCCC	1 cut(s)	3116
ApoI	RAATTY	7 cut(s)	417, 692, 1937, 2637, 2738, 2810, 3590
ArsI	GACNNNNNNTTYG	4 cut(s)	795, 827, 1171, 1203
AseI	ATTAAT	1 cut(s)	2520
Asp700I	GAANNNNTTC	4 cut(s)	1971, 3298, 3345, 3886
Asp718I	GGTACC	1 cut(s)	1373
AspLEI	GCGC	5 cut(s)	296, 1269, 2121, 2722, 4068
AsuC2I	CCSGG	3 cut(s)	374, 1455, 3236
AsuHPI	GGTGA	6 cut(s)	62, 484, 566, 1469, 2879, 4048
AsuII	TTCGAA	1 cut(s)	2198
AsuNHI	GCTAGC	1 cut(s)	3583
AvaI	CYCGRG	3 cut(s)	741, 1182, 1800
AvaII	GGWCC	5 cut(s)	370, 748, 1490, 1563, 3794
BaeGI	GKGCMC	3 cut(s)	918, 1366, 3116
BanI	GGYRCC	5 cut(s)	293, 1363, 1373, 2255, 2560
BanII	GRGCYC	4 cut(s)	742, 1089, 1999, 3116
BarI	GAAGNNNNNNTAC	2 cut(s)	3971, 4003
BauI	CACGAG	2 cut(s)	1866, 3660
BbrPI	CACGTG	2 cut(s)	565, 3899
BbsI	GAAGAC	3 cut(s)	127, 3291, 3834
Bbv12I	GWGCWC	5 cut(s)	1117, 1355, 1435, 1531, 1999
BbvCI	CCTCAGC	1 cut(s)	1656
BceAI	ACGGC	2 cut(s)	346, 2013
BcgI	CGANNNNNNTGC	2 cut(s)	2588, 2622
BciT130I	CCWGG	7 cut(s)	501, 1110, 1368, 1533, 2217, 3087, 3798
BclI	TGATCA	2 cut(s)	1221, 3664
BcnI	CCSGG	3 cut(s)	374, 1455, 3236
BcuI	ACTAGT	1 cut(s)	2539
BfaI	CTAG	7 cut(s)	422, 1482, 1890, 2540, 2591, 3584, 3698
BfmI	CTRYAG	1 cut(s)	2442
BfoI	RGCGCY	3 cut(s)	297, 1270, 2723
BfrI	CTTAAG	2 cut(s)	1879, 3434
BfuAI	ACCTGC	2 cut(s)	759, 2620
BglII	AGATCT	1 cut(s)	1507
Bme18I	GGWCC	5 cut(s)	370, 748, 1490, 1563, 3794
BmeT110I	CYCGRG	3 cut(s)	741, 1182, 1800
BmgBI	CACGTC	2 cut(s)	50, 526
BmrI	ACTGGG	3 cut(s)	450, 1182, 1758
BmtI	GCTAGC	1 cut(s)	3587
BmuI	ACTGGG	3 cut(s)	450, 1182, 1758
BpiI	GAAGAC	3 cut(s)	127, 3291, 3834
BpmI	CTGGAG	3 cut(s)	384, 522, 1131
Bpu10I	CCTNAGC	3 cut(s)	669, 1150, 1656
Bpu14I	TTCGAA	1 cut(s)	2198
BpuEI	CTTGAG	3 cut(s)	896, 2757, 3917
BpuMI	CCSGG	3 cut(s)	374, 1455, 3236
Bsa29I	ATCGAT	1 cut(s)	301
BsaAI	YACGTR	3 cut(s)	565, 1560, 3899
BsaHI	GRCGYC	3 cut(s)	294, 339, 3743
BsaI	GGTCTC	2 cut(s)	125, 3647
BsaJI	CCNNGG	6 cut(s)	334, 1039, 1453, 1486, 2114, 3086
BsaWI	WCCGGW	1 cut(s)	3034
Bsc4I	CCNNNNNNNGG	9 cut(s)	893, 1081, 1262, 1460, 2120, 2417, 3049, 3050, 3803
Bse118I	RCCGGY	2 cut(s)	1328, 1342
Bse1I	ACTGG	8 cut(s)	159, 445, 1177, 1715, 1753, 2564, 2651, 3708
Bse3DI	GCAATG	3 cut(s)	186, 1425, 3461
BseBI	CCWGG	7 cut(s)	501, 1110, 1368, 1533, 2217, 3087, 3798
BseCI	ATCGAT	1 cut(s)	301
BseDI	CCNNGG	6 cut(s)	334, 1039, 1453, 1486, 2114, 3086
BseLI	CCNNNNNNNGG	9 cut(s)	893, 1081, 1262, 1460, 2120, 2417, 3049, 3050, 3803
BseMI	GCAATG	3 cut(s)	186, 1425, 3461
BseMII	CTCAG	7 cut(s)	1647, 1992, 2462, 2715, 2834, 3087, 3420
BseNI	ACTGG	8 cut(s)	159, 445, 1177, 1715, 1753, 2564, 2651, 3708
BseRI	GAGGAG	3 cut(s)	44, 1997, 3638
BseSI	GKGCMC	3 cut(s)	918, 1366, 3116
BseX3I	CGGCCG	1 cut(s)	331
BsgI	GTGCAG	4 cut(s)	421, 506, 1557, 2060
Bsh1236I	CGCG	2 cut(s)	336, 2121
Bsh1285I	CGRYCG	2 cut(s)	301, 334
BshFI	GGCC	9 cut(s)	333, 808, 1342, 2028, 2124, 2220, 3042, 3114, 3810
BshNI	GGYRCC	5 cut(s)	293, 1363, 1373, 2255, 2560
BshVI	ATCGAT	1 cut(s)	301
BsiEI	CGRYCG	2 cut(s)	301, 334
BsiHKAI	GWGCWC	5 cut(s)	1117, 1355, 1435, 1531, 1999
BsiHKCI	CYCGRG	3 cut(s)	741, 1182, 1800
BsiSI	CCGG	6 cut(s)	374, 1329, 1343, 1455, 3035, 3236
BslFI	GGGAC	2 cut(s)	656, 2322
BslI	CCNNNNNNNGG	9 cut(s)	893, 1081, 1262, 1460, 2120, 2417, 3049, 3050, 3803
BsmBI	CGTCTC	2 cut(s)	56, 109
BsmFI	GGGAC	2 cut(s)	656, 2322
BsnI	GGCC	9 cut(s)	333, 808, 1342, 2028, 2124, 2220, 3042, 3114, 3810
Bso31I	GGTCTC	2 cut(s)	125, 3647
BsoBI	CYCGRG	3 cut(s)	741, 1182, 1800
Bsp119I	TTCGAA	1 cut(s)	2198
Bsp120I	GGGCCC	1 cut(s)	3112
Bsp19I	CCATGG	1 cut(s)	1039
BspANI	GGCC	9 cut(s)	333, 808, 1342, 2028, 2124, 2220, 3042, 3114, 3810
BspCNI	CTCAG	7 cut(s)	1648, 1993, 2461, 2714, 2833, 3086, 3419
BspDI	ATCGAT	1 cut(s)	301
BspFNI	CGCG	2 cut(s)	336, 2121
BspHI	TCATGA	4 cut(s)	688, 1584, 1942, 3523
BspMI	ACCTGC	2 cut(s)	759, 2620
BspOI	GCTAGC	1 cut(s)	3587
BspPI	GGATC	3 cut(s)	3163, 3215, 3605
BspQI	GCTCTTC	1 cut(s)	2890
BspT104I	TTCGAA	1 cut(s)	2198
BspT107I	GGYRCC	5 cut(s)	293, 1363, 1373, 2255, 2560
BspTI	CTTAAG	2 cut(s)	1879, 3434
BspTNI	GGTCTC	2 cut(s)	125, 3647
BsrBI	CCGCTC	1 cut(s)	716
BsrDI	GCAATG	3 cut(s)	186, 1425, 3461
BsrFI	RCCGGY	2 cut(s)	1328, 1342
BsrI	ACTGG	8 cut(s)	159, 445, 1177, 1715, 1753, 2564, 2651, 3708
BssAI	RCCGGY	2 cut(s)	1328, 1342
BssECI	CCNNGG	6 cut(s)	334, 1039, 1453, 1486, 2114, 3086
BssNI	GRCGYC	3 cut(s)	294, 339, 3743
BssSI	CACGAG	2 cut(s)	1866, 3660
BssT1I	CCWWGG	2 cut(s)	1039, 2114
Bst2BI	CACGAG	2 cut(s)	1866, 3660
Bst2UI	CCWGG	7 cut(s)	501, 1110, 1368, 1533, 2217, 3087, 3798
Bst4CI	ACNGT	8 cut(s)	45, 218, 491, 1307, 1357, 1921, 2167, 3503
Bst6I	CTCTTC	8 cut(s)	538, 614, 2386, 2679, 2890, 2991, 3336, 4008
BstACI	GRCGYC	3 cut(s)	294, 339, 3743
BstAFI	CTTAAG	2 cut(s)	1879, 3434
BstAPI	GCANNNNNTGC	3 cut(s)	1424, 1544, 2615
BstBAI	YACGTR	3 cut(s)	565, 1560, 3899
BstBI	TTCGAA	1 cut(s)	2198
BstC8I	GCNNGC	9 cut(s)	783, 1147, 1330, 1344, 1897, 2388, 3468, 3585, 3812
BstDSI	CCRYGG	2 cut(s)	334, 1039
BstFNI	CGCG	2 cut(s)	336, 2121
BstH2I	RGCGCY	3 cut(s)	297, 1270, 2723
BstHHI	GCGC	5 cut(s)	296, 1269, 2121, 2722, 4068
BstMCI	CGRYCG	2 cut(s)	301, 334
BstNI	CCWGG	7 cut(s)	501, 1110, 1368, 1533, 2217, 3087, 3798
BstNSI	RCATGY	3 cut(s)	1052, 2944, 4064
BstSFI	CTRYAG	1 cut(s)	2442
BstSLI	GKGCMC	3 cut(s)	918, 1366, 3116
BstUI	CGCG	2 cut(s)	336, 2121
BstV2I	GAAGAC	3 cut(s)	127, 3291, 3834
BstX2I	RGATCY	3 cut(s)	1507, 3155, 3220
BstXI	CCANNNNNNTGG	1 cut(s)	1818
BstYI	RGATCY	3 cut(s)	1507, 3155, 3220
BstZI	CGGCCG	1 cut(s)	331
Bsu15I	ATCGAT	1 cut(s)	301
BsuRI	GGCC	9 cut(s)	333, 808, 1342, 2028, 2124, 2220, 3042, 3114, 3810
BsuTUI	ATCGAT	1 cut(s)	301
BtgI	CCRYGG	2 cut(s)	334, 1039
BtrI	CACGTC	2 cut(s)	50, 526
BtsIMutI	CAGTG	6 cut(s)	438, 1353, 1926, 2163, 3508, 3701
BveI	ACCTGC	2 cut(s)	759, 2620
Cac8I	GCNNGC	9 cut(s)	783, 1147, 1330, 1344, 1897, 2388, 3468, 3585, 3812
CaiI	CAGNNNCTG	4 cut(s)	1172, 1499, 2657, 3803
CciI	TCATGA	4 cut(s)	688, 1584, 1942, 3523
CfoI	GCGC	5 cut(s)	296, 1269, 2121, 2722, 4068
Cfr10I	RCCGGY	2 cut(s)	1328, 1342
Cfr42I	CCGCGG	1 cut(s)	337
ClaI	ATCGAT	1 cut(s)	301
CseI	GACGC	2 cut(s)	328, 3732
CsiI	ACCWGGT	1 cut(s)	1366
Csp6I	GTAC	5 cut(s)	975, 1374, 1808, 2246, 3685
CspCI	CAANNNNNGTGG	4 cut(s)	2248, 2283, 2472, 2507
CviQI	GTAC	5 cut(s)	975, 1374, 1808, 2246, 3685
DinI	GGCGCC	1 cut(s)	295
DraI	TTTAAA	1 cut(s)	3838
DraIII	CACNNNGTG	2 cut(s)	1370, 4036
EaeI	YGGCCR	2 cut(s)	331, 2026
EagI	CGGCCG	1 cut(s)	331
Eam1104I	CTCTTC	8 cut(s)	538, 614, 2386, 2679, 2890, 2991, 3336, 4008
EarI	CTCTTC	8 cut(s)	538, 614, 2386, 2679, 2890, 2991, 3336, 4008
Ecl136II	GAGCTC	1 cut(s)	1997
EclXI	CGGCCG	1 cut(s)	331
Eco130I	CCWWGG	2 cut(s)	1039, 2114
Eco24I	GRGCYC	4 cut(s)	742, 1089, 1999, 3116
Eco31I	GGTCTC	2 cut(s)	125, 3647
Eco47I	GGWCC	5 cut(s)	370, 748, 1490, 1563, 3794
Eco52I	CGGCCG	1 cut(s)	331
Eco53kI	GAGCTC	1 cut(s)	1997
Eco57I	CTGAAG	4 cut(s)	492, 2601, 2781, 3777
Eco72I	CACGTG	2 cut(s)	565, 3899
Eco88I	CYCGRG	3 cut(s)	741, 1182, 1800
EcoICRI	GAGCTC	1 cut(s)	1997
EcoO109I	RGGNCCY	2 cut(s)	748, 806
EcoRI	GAATTC	1 cut(s)	2637
EcoRII	CCWGG	7 cut(s)	499, 1108, 1366, 1531, 2215, 3085, 3796
EcoT14I	CCWWGG	2 cut(s)	1039, 2114
EcoT22I	ATGCAT	1 cut(s)	4062
EcoT38I	GRGCYC	4 cut(s)	742, 1089, 1999, 3116
EgeI	GGCGCC	1 cut(s)	295
EheI	GGCGCC	1 cut(s)	295
ErhI	CCWWGG	2 cut(s)	1039, 2114
Esp3I	CGTCTC	2 cut(s)	56, 109
FalI	AAGNNNNNCTT	2 cut(s)	2235, 2267
FaqI	GGGAC	2 cut(s)	656, 2322
FauI	CCCGC	1 cut(s)	620
FauNDI	CATATG	3 cut(s)	1405, 3196, 4042
FbaI	TGATCA	2 cut(s)	1221, 3664
FblI	GTMKAC	1 cut(s)	2176
FriOI	GRGCYC	4 cut(s)	742, 1089, 1999, 3116
FspBI	CTAG	7 cut(s)	422, 1482, 1890, 2540, 2591, 3584, 3698
GlaI	GCGC	5 cut(s)	295, 1268, 2120, 2721, 4067
GsuI	CTGGAG	3 cut(s)	384, 522, 1131
HaeII	RGCGCY	3 cut(s)	297, 1270, 2723
HaeIII	GGCC	9 cut(s)	333, 808, 1342, 2028, 2124, 2220, 3042, 3114, 3810
HapII	CCGG	6 cut(s)	374, 1329, 1343, 1455, 3035, 3236
HgaI	GACGC	2 cut(s)	328, 3732
HhaI	GCGC	5 cut(s)	296, 1269, 2121, 2722, 4068
Hin1I	GRCGYC	3 cut(s)	294, 339, 3743
Hin6I	GCGC	5 cut(s)	294, 1267, 2119, 2720, 4066
HinP1I	GCGC	5 cut(s)	294, 1267, 2119, 2720, 4066
HincII	GTYRAC	5 cut(s)	529, 1276, 1771, 2177, 2320
HindII	GTYRAC	5 cut(s)	529, 1276, 1771, 2177, 2320
HindIII	AAGCTT	3 cut(s)	2398, 2871, 3983
HpaII	CCGG	6 cut(s)	374, 1329, 1343, 1455, 3035, 3236
HphI	GGTGA	6 cut(s)	62, 484, 566, 1469, 2879, 4048
Hpy99I	CGWCG	7 cut(s)	17, 218, 311, 332, 344, 1578, 3748
HpyCH4III	ACNGT	8 cut(s)	45, 218, 491, 1307, 1357, 1921, 2167, 3503
Hsp92I	GRCGYC	3 cut(s)	294, 339, 3743
HspAI	GCGC	5 cut(s)	294, 1267, 2119, 2720, 4066
KasI	GGCGCC	1 cut(s)	293
KpnI	GGTACC	1 cut(s)	1377
KroI	GCCGGC	2 cut(s)	1328, 1342
KroNI	GCCGGC	2 cut(s)	1330, 1344
Ksp22I	TGATCA	2 cut(s)	1221, 3664
KspI	CCGCGG	1 cut(s)	337
LguI	GCTCTTC	1 cut(s)	2890
MabI	ACCWGGT	1 cut(s)	1366
MaeI	CTAG	7 cut(s)	422, 1482, 1890, 2540, 2591, 3584, 3698
MaeIII	GTNAC	8 cut(s)	45, 394, 1021, 2371, 2687, 3751, 3892, 4036
MbiI	CCGCTC	1 cut(s)	716
MflI	RGATCY	3 cut(s)	1507, 3155, 3220
Mly113I	GGCGCC	1 cut(s)	294
MlyI	GAGTC	7 cut(s)	260, 865, 1174, 1681, 2315, 2825, 3782
MmeI	TCCRAC	3 cut(s)	1594, 2702, 3726
Mph1103I	ATGCAT	1 cut(s)	4062
MroNI	GCCGGC	2 cut(s)	1328, 1342
MroXI	GAANNNNTTC	4 cut(s)	1971, 3298, 3345, 3886
MslI	CAYNNNNRTG	5 cut(s)	687, 1212, 1947, 2082, 3390
MspA1I	CMGCKG	3 cut(s)	336, 1496, 2968
MspCI	CTTAAG	2 cut(s)	1879, 3434
MspI	CCGG	6 cut(s)	374, 1329, 1343, 1455, 3035, 3236
MvaI	CCWGG	7 cut(s)	501, 1110, 1368, 1533, 2217, 3087, 3798
MvnI	CGCG	2 cut(s)	336, 2121
NaeI	GCCGGC	2 cut(s)	1330, 1344
NarI	GGCGCC	1 cut(s)	294
NciI	CCSGG	3 cut(s)	374, 1455, 3236
NcoI	CCATGG	1 cut(s)	1039
NdeI	CATATG	3 cut(s)	1405, 3196, 4042
NgoMIV	GCCGGC	2 cut(s)	1328, 1342
NheI	GCTAGC	1 cut(s)	3583
NmeAIII	GCCGAG	1 cut(s)	1511
NmuCI	GTSAC	3 cut(s)	45, 2687, 4036
NsiI	ATGCAT	1 cut(s)	4062
NspI	RCATGY	3 cut(s)	1052, 2944, 4064
NspV	TTCGAA	1 cut(s)	2198
PaeR7I	CTCGAG	1 cut(s)	1182
PagI	TCATGA	4 cut(s)	688, 1584, 1942, 3523
PaqCI	CACCTGC	1 cut(s)	2620
PciI	ACATGT	1 cut(s)	1048
PciSI	GCTCTTC	1 cut(s)	2890
PcsI	WCGNNNNNNNCGW	3 cut(s)	275, 336, 3971
PdiI	GCCGGC	2 cut(s)	1330, 1344
PdmI	GAANNNNTTC	4 cut(s)	1971, 3298, 3345, 3886
PfeI	GAWTC	4 cut(s)	303, 359, 2136, 3882
PflMI	CCANNNNNTGG	2 cut(s)	1262, 3803
Ple19I	CGATCG	1 cut(s)	301
PleI	GAGTC	7 cut(s)	259, 865, 1174, 1680, 2315, 2824, 3782
PluTI	GGCGCC	1 cut(s)	297
PmaCI	CACGTG	2 cut(s)	565, 3899
PmlI	CACGTG	2 cut(s)	565, 3899
PpsI	GAGTC	7 cut(s)	259, 865, 1174, 1680, 2315, 2824, 3782
Ppu21I	YACGTR	3 cut(s)	565, 1560, 3899
PpuMI	RGGWCCY	1 cut(s)	748
PscI	ACATGT	1 cut(s)	1048
PshBI	ATTAAT	1 cut(s)	2520
PsiI	TTATAA	2 cut(s)	573, 3066
Psp124BI	GAGCTC	1 cut(s)	1999
Psp1406I	AACGTT	1 cut(s)	3331
Psp5II	RGGWCCY	1 cut(s)	748
Psp6I	CCWGG	7 cut(s)	499, 1108, 1366, 1531, 2215, 3085, 3796
PspCI	CACGTG	2 cut(s)	565, 3899
PspGI	CCWGG	7 cut(s)	499, 1108, 1366, 1531, 2215, 3085, 3796
PspOMI	GGGCCC	1 cut(s)	3112
PspPPI	RGGWCCY	1 cut(s)	748
PspXI	VCTCGAGB	1 cut(s)	1182
PsrI	GAACNNNNNNTAC	2 cut(s)	1233, 1265
PstNI	CAGNNNCTG	4 cut(s)	1172, 1499, 2657, 3803
PsuI	RGATCY	3 cut(s)	1507, 3155, 3220
PvuI	CGATCG	1 cut(s)	301
PvuII	CAGCTG	2 cut(s)	1496, 2968
RsaI	GTAC	5 cut(s)	976, 1375, 1809, 2247, 3686
RsaNI	GTAC	5 cut(s)	975, 1374, 1808, 2246, 3685
RseI	CAYNNNNRTG	5 cut(s)	687, 1212, 1947, 2082, 3390
SacI	GAGCTC	1 cut(s)	1999
SacII	CCGCGG	1 cut(s)	337
SalI	GTCGAC	1 cut(s)	2175
SapI	GCTCTTC	1 cut(s)	2890
SchI	GAGTC	7 cut(s)	260, 865, 1174, 1681, 2315, 2825, 3782
SexAI	ACCWGGT	1 cut(s)	1366
SfcI	CTRYAG	1 cut(s)	2442
SfoI	GGCGCC	1 cut(s)	295
Sfr274I	CTCGAG	1 cut(s)	1182
Sfr303I	CCGCGG	1 cut(s)	337
SfuI	TTCGAA	1 cut(s)	2198
SgrBI	CCGCGG	1 cut(s)	337
SinI	GGWCC	5 cut(s)	370, 748, 1490, 1563, 3794
SlaI	CTCGAG	1 cut(s)	1182
SmiMI	CAYNNNNRTG	5 cut(s)	687, 1212, 1947, 2082, 3390
SmlI	CTYRAG	6 cut(s)	875, 1182, 1879, 2772, 3434, 3932
SmoI	CTYRAG	6 cut(s)	875, 1182, 1879, 2772, 3434, 3932
SpeI	ACTAGT	1 cut(s)	2539
SspDI	GGCGCC	1 cut(s)	293
SspMI	CTAG	7 cut(s)	422, 1482, 1890, 2540, 2591, 3584, 3698
SstI	GAGCTC	1 cut(s)	1999
StyI	CCWWGG	2 cut(s)	1039, 2114
TaaI	ACNGT	8 cut(s)	45, 218, 491, 1307, 1357, 1921, 2167, 3503
TaqII	GACCGA	1 cut(s)	149
TauI	GCSGC	5 cut(s)	204, 207, 336, 339, 2124
TfiI	GAWTC	4 cut(s)	303, 359, 2136, 3882
TscAI	CASTG	6 cut(s)	445, 1360, 1926, 2170, 3508, 3708
TseFI	GTSAC	3 cut(s)	45, 2687, 4036
Tsp45I	GTSAC	3 cut(s)	45, 2687, 4036
TspGWI	ACGGA	4 cut(s)	1518, 1591, 3894, 3980
TspRI	CASTG	6 cut(s)	445, 1360, 1926, 2170, 3508, 3708
Van91I	CCANNNNNTGG	2 cut(s)	1262, 3803
Vha464I	CTTAAG	2 cut(s)	1879, 3434
VpaK11BI	GGWCC	5 cut(s)	370, 748, 1490, 1563, 3794
VspI	ATTAAT	1 cut(s)	2520
XapI	RAATTY	7 cut(s)	417, 692, 1937, 2637, 2738, 2810, 3590
XbaI	TCTAGA	1 cut(s)	421
XceI	RCATGY	3 cut(s)	1052, 2944, 4064
XhoI	CTCGAG	1 cut(s)	1182
XmiI	GTMKAC	1 cut(s)	2176
XmnI	GAANNNNTTC	4 cut(s)	1971, 3298, 3345, 3886
XspI	CTAG	7 cut(s)	422, 1482, 1890, 2540, 2591, 3584, 3698
Zsp2I	ATGCAT	1 cut(s)	4062

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.