Rw3G016950

Leucine-rich repeat receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
18285087 .. 18287307
2221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G016950.1

Sequence Viewer

Length: 1443 bp
ATGAAGAAGAAGGCTTATCCTTTCGCCTTAGCCTTCCTACTCCTACTCACCTCTGCTAAACTCTCACTCTCCTCTTCGCCGCCGAACGACACGTCAGCTCTCACCGACTTCCGCCTCAAAACCGACACCCACGGCTACCTCCGGTCCAACTGGACCGGACCCGACCCTTGCGCCGCTGAATGGGTCGGAGTCCGATGCTCCAATAACAACCTCCGAGTCGTCGGTCTCTCCCTTCCTTCCCTCAACCTGCGCGGCCCGCTCGACTCTCTGGCTCAGCTGGACCAACTTCGCCTTCTTGACCTCCACAACAACCGCCTCAACGGCACCGTTTTGCCCTTAGCCAACTGCACCAACCTCAAGCTGCTCTACCTCGCCGGGAACGACCTCTCCGGCGAGATCCCGCAGGAATTCGCCTCGCTCCGGCGGCTTCTCCGTCTCGACCTCTCCGACAACAACATCCGCGGCGCCAACAACCTCCTCACCGGCAAGATCCCCGACCTCTCCGGCTCCCTCTCCGATCTGAAGGAGCTTAACCTGACCAACAACGAGCTCTATGGAAAATTGCCGGAGGGTTTGCTCAGAAAATTCGGTGAGGAAAGCTTTTCCGGCAACGAAGGGCTCTGCGGCTCTTCTCCGTTACCGGCTTGCTCCTTCACCGGAGCTAACCCACCCTCGGCGGCTTCGACAGAAACGGTGCCGTCTAACCCCAGCTCGGTCAAAAACTCGAGAAAGGGATTGAGTCCTGGAGCAATAGTAGCAATTGTGATAGCGAATTGCGTAGCCATTCTCGTTATCATTTCGTTCATTGTGGCTCACTACTGCGCCAGAGACCGAAGCTCGAACTCGATCGGGGGAAGCGAAGCCGGGAAGAGGAAGAGTGGGAGTAGCTATGGAGGTGAAAAGAGGGTGTATGCTAACAATGGGGGTGGTGACAGTGATGGGACTAATGCTACTGACCGGAGTAAGCTGGTGTTTTTCGACCGGAGGAAGCAGTTTGAGCTGGAGGACTTGCTCCGGGCGTCGGCGGAGATGTTGGGGAAAGGGAGCTTGGGGACGGTGTACAAGGCGGTGCTTGATGATGGTTGTACAATGGCGGTGAAGAGGCTCAAGGATGCGAACCCTTGTGCGAGGAAAGAGTTTGAGCAGTATATGGATTTGATTGGGAAGATTAAGCACCCTAATGTGGTGAGGCTTAGTGCTTATTACTATGCTAAGGAGGAGAAGCTTCTTGTGTATGACTATCTGCCTAATGGGAGCTTGCACTCACTTCTTCATGTGCCTAATGGAGTGTGCAACATCATTAACTCTTGGGGCATATATATGTACGAAATGACTGCTGCAAAATCTGAGAAACTTGAGCGAGCCTCCTCCATATACCCCCCCCTGCCTCCTCGCCACAATGCTTGGATGATATCTCTAGCAGCTCCCTCAGCTCCACTTTGA
Functional Annotation

Protein Analysis

480

Amino Acids

52.03

Weight (kDa)

8.92

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 343 - 429 5.3e-12 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 343 - 425 2.9e-11 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012382)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 255
AccB1I GGYRCC 3 cut(s) 323, 464, 694
AccBSI CCGCTC 1 cut(s) 259
AccII CGCG 2 cut(s) 252, 462
AclWI GGATC 2 cut(s) 391, 484
AcsI RAATTY 2 cut(s) 407, 584
AcuI CTGAAG 1 cut(s) 542
AcyI GRCGYC 2 cut(s) 465, 1019
AfaI GTAC 3 cut(s) 1061, 1087, 1325
AfiI CCNNNNNNNGG 7 cut(s) 180, 420, 673, 712, 870, 1021, 1183
AflIII ACRYGT 1 cut(s) 90
AjiI CACGTC 1 cut(s) 93
AjnI CCWGG 1 cut(s) 742
AjuI GAANNNNNNNTTGG 4 cut(s) 276, 308, 1031, 1063
AloI GAACNNNNNNTCC 2 cut(s) 371, 403
Alw21I GWGCWC 1 cut(s) 552
Alw26I GTCTC 3 cut(s) 230, 440, 822
AlwI GGATC 2 cut(s) 391, 484
Ama87I CYCGRG 1 cut(s) 724
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 3 cut(s) 361, 1337, 1421
ApoI RAATTY 2 cut(s) 407, 584
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
AspLEI GCGC 4 cut(s) 173, 252, 467, 824
AspS9I GGNCC 5 cut(s) 144, 153, 158, 254, 280
AsuC2I CCSGG 3 cut(s) 376, 865, 1016
AsuHPI GGTGA 9 cut(s) 40, 94, 472, 602, 646, 908, 941, 1108, 1198
AvaI CYCGRG 1 cut(s) 724
AvaII GGWCC 4 cut(s) 144, 153, 158, 280
BanI GGYRCC 3 cut(s) 323, 464, 694
BanII GRGCYC 2 cut(s) 552, 621
Bbv12I GWGCWC 1 cut(s) 552
BbvCI CCTCAGC 1 cut(s) 1429
BbvI GCAGC 3 cut(s) 348, 1324, 1433
BccI CCATC 2 cut(s) 932, 1073
BceAI ACGGC 3 cut(s) 148, 337, 682
BcgI CGANNNNNNTGC 2 cut(s) 1316, 1350
BciT130I CCWGG 1 cut(s) 744
BcnI CCSGG 3 cut(s) 376, 865, 1016
BcoDI GTCTC 3 cut(s) 230, 440, 822
BfaI CTAG 1 cut(s) 1418
BfoI RGCGCY 1 cut(s) 468
BfuAI ACCTGC 1 cut(s) 255
BglI GCCNNNNNGGC 1 cut(s) 321
BlpI GCTNAGC 1 cut(s) 273
Bme1390I CCNGG 4 cut(s) 376, 744, 865, 1016
Bme18I GGWCC 4 cut(s) 144, 153, 158, 280
BmeT110I CYCGRG 1 cut(s) 724
BmgBI CACGTC 1 cut(s) 93
BmgT120I GGNCC 5 cut(s) 144, 153, 158, 254, 280
BmiI GGNNCC 5 cut(s) 160, 325, 466, 508, 696
BmrFI CCNGG 4 cut(s) 376, 744, 865, 1016
BmsI GCATC 2 cut(s) 185, 1102
BplI GAGNNNNNCTC 2 cut(s) 1349, 1381
BpmI CTGGAG 2 cut(s) 765, 1022
Bpu10I CCTNAGC 4 cut(s) 28, 337, 1212, 1429
Bpu1102I GCTNAGC 1 cut(s) 273
BpuEI CTTGAG 3 cut(s) 341, 1091, 1376
BpuMI CCSGG 3 cut(s) 376, 865, 1016
BsaHI GRCGYC 2 cut(s) 465, 1019
BsaI GGTCTC 2 cut(s) 230, 822
BsaJI CCNNGG 3 cut(s) 130, 460, 672
BsaWI WCCGGW 5 cut(s) 141, 155, 656, 957, 981
BsaXI ACNNNNNCTCC 4 cut(s) 371, 401, 738, 768
Bsc4I CCNNNNNNNGG 7 cut(s) 180, 420, 673, 712, 870, 1021, 1183
Bse118I RCCGGY 2 cut(s) 482, 640
Bse1I ACTGG 1 cut(s) 155
BseBI CCWGG 1 cut(s) 744
BseDI CCNNGG 3 cut(s) 130, 460, 672
BseGI GGATG 3 cut(s) 456, 1117, 1413
BseLI CCNNNNNNNGG 7 cut(s) 180, 420, 673, 712, 870, 1021, 1183
BseMII CTCAG 4 cut(s) 287, 592, 1338, 1443
BseNI ACTGG 1 cut(s) 155
BseRI GAGGAG 5 cut(s) 61, 467, 1232, 1357, 1380
BseXI GCAGC 3 cut(s) 348, 1324, 1433
BseYI CCCAGC 1 cut(s) 707
BsgI GTGCAG 1 cut(s) 331
Bsh1236I CGCG 2 cut(s) 252, 462
Bsh1285I CGRYCG 2 cut(s) 849, 982
BshFI GGCC 1 cut(s) 255
BshNI GGYRCC 3 cut(s) 323, 464, 694
BsiEI CGRYCG 2 cut(s) 849, 982
BsiHKAI GWGCWC 1 cut(s) 552
BsiHKCI CYCGRG 1 cut(s) 724
BslFI GGGAC 2 cut(s) 955, 1066
BslI CCNNNNNNNGG 7 cut(s) 180, 420, 673, 712, 870, 1021, 1183
BsmAI GTCTC 3 cut(s) 230, 440, 822
BsmBI CGTCTC 1 cut(s) 440
BsmFI GGGAC 2 cut(s) 955, 1066
BsnI GGCC 1 cut(s) 255
Bso31I GGTCTC 2 cut(s) 230, 822
BsoBI CYCGRG 1 cut(s) 724
Bsp1286I GDGCHC 2 cut(s) 552, 621
Bsp1407I TGTACA 2 cut(s) 1059, 1085
Bsp143I GATC 4 cut(s) 396, 489, 517, 846
Bsp1720I GCTNAGC 1 cut(s) 273
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 4 cut(s) 286, 591, 1339, 1442
BspFNI CGCG 2 cut(s) 252, 462
BspLI GGNNCC 5 cut(s) 160, 325, 466, 508, 696
BspMI ACCTGC 1 cut(s) 255
BspPI GGATC 2 cut(s) 391, 484
BspQI GCTCTTC 1 cut(s) 634
BspT107I GGYRCC 3 cut(s) 323, 464, 694
BspTNI GGTCTC 2 cut(s) 230, 822
BsrBI CCGCTC 1 cut(s) 259
BsrFI RCCGGY 2 cut(s) 482, 640
BsrGI TGTACA 2 cut(s) 1059, 1085
BsrI ACTGG 1 cut(s) 155
BssAI RCCGGY 2 cut(s) 482, 640
BssECI CCNNGG 3 cut(s) 130, 460, 672
BssMI GATC 4 cut(s) 396, 489, 517, 846
BssNI GRCGYC 2 cut(s) 465, 1019
Bst2UI CCWGG 1 cut(s) 744
Bst4CI ACNGT 4 cut(s) 328, 694, 935, 1057
Bst6I CTCTTC 5 cut(s) 79, 634, 863, 869, 1094
BstACI GRCGYC 2 cut(s) 465, 1019
BstAUI TGTACA 2 cut(s) 1059, 1085
BstC8I GCNNGC 4 cut(s) 257, 646, 1259, 1362
BstDEI CTNAG 8 cut(s) 28, 273, 337, 578, 1193, 1212, 1347, 1429
BstDSI CCRYGG 2 cut(s) 130, 460
BstF5I GGATG 3 cut(s) 456, 1117, 1413
BstFNI CGCG 2 cut(s) 252, 462
BstH2I RGCGCY 1 cut(s) 468
BstHHI GCGC 4 cut(s) 173, 252, 467, 824
BstKTI GATC 4 cut(s) 399, 492, 520, 849
BstMAI GTCTC 3 cut(s) 230, 440, 822
BstMBI GATC 4 cut(s) 396, 489, 517, 846
BstMCI CGRYCG 2 cut(s) 849, 982
BstMWI GCNNNNNNNGC 7 cut(s) 256, 321, 424, 606, 755, 997, 1430
BstNI CCWGG 1 cut(s) 744
BstSCI CCNGG 4 cut(s) 374, 742, 863, 1014
BstUI CGCG 2 cut(s) 252, 462
BstV1I GCAGC 3 cut(s) 348, 1324, 1433
BstX2I RGATCY 2 cut(s) 396, 489
BstYI RGATCY 2 cut(s) 396, 489
BsuRI GGCC 1 cut(s) 255
BtgI CCRYGG 2 cut(s) 130, 460
BtrI CACGTC 1 cut(s) 93
BtsCI GGATG 3 cut(s) 456, 1117, 1413
BtsIMutI CAGTG 1 cut(s) 940
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 4 cut(s) 257, 646, 1259, 1362
CfoI GCGC 4 cut(s) 173, 252, 467, 824
Cfr10I RCCGGY 2 cut(s) 482, 640
Cfr13I GGNCC 5 cut(s) 144, 153, 158, 254, 280
Cfr42I CCGCGG 1 cut(s) 463
CseI GACGC 1 cut(s) 1008
Csp6I GTAC 3 cut(s) 1060, 1086, 1324
CspCI CAANNNNNGTGG 4 cut(s) 907, 942, 1385, 1420
CviAII CATG 1 cut(s) 1274
CviQI GTAC 3 cut(s) 1060, 1086, 1324
DdeI CTNAG 8 cut(s) 28, 273, 337, 578, 1193, 1212, 1347, 1429
DinI GGCGCC 1 cut(s) 466
DpnI GATC 4 cut(s) 398, 491, 519, 848
DpnII GATC 4 cut(s) 396, 489, 517, 846
Eam1104I CTCTTC 5 cut(s) 79, 634, 863, 869, 1094
EarI CTCTTC 5 cut(s) 79, 634, 863, 869, 1094
EciI GGCGGA 2 cut(s) 101, 1040
Ecl136II GAGCTC 1 cut(s) 550
Eco24I GRGCYC 2 cut(s) 552, 621
Eco31I GGTCTC 2 cut(s) 230, 822
Eco32I GATATC 1 cut(s) 1413
Eco47I GGWCC 4 cut(s) 144, 153, 158, 280
Eco53kI GAGCTC 1 cut(s) 550
Eco57I CTGAAG 1 cut(s) 542
Eco88I CYCGRG 1 cut(s) 724
EcoICRI GAGCTC 1 cut(s) 550
EcoRI GAATTC 1 cut(s) 407
EcoRII CCWGG 1 cut(s) 742
EcoRV GATATC 1 cut(s) 1413
EcoT38I GRGCYC 2 cut(s) 552, 621
EgeI GGCGCC 1 cut(s) 466
EheI GGCGCC 1 cut(s) 466
Esp3I CGTCTC 1 cut(s) 440
FaeI CATG 1 cut(s) 1277
FaqI GGGAC 2 cut(s) 955, 1066
FatI CATG 1 cut(s) 1273
FauI CCCGC 2 cut(s) 264, 408
FokI GGATG 3 cut(s) 443, 1124, 1420
FriOI GRGCYC 2 cut(s) 552, 621
FspBI CTAG 1 cut(s) 1418
GlaI GCGC 4 cut(s) 172, 251, 466, 823
GsaI CCCAGC 1 cut(s) 711
GsuI CTGGAG 2 cut(s) 765, 1022
HaeII RGCGCY 1 cut(s) 468
HaeIII GGCC 1 cut(s) 255
HgaI GACGC 1 cut(s) 1008
HhaI GCGC 4 cut(s) 173, 252, 467, 824
Hin1I GRCGYC 2 cut(s) 465, 1019
Hin1II CATG 1 cut(s) 1277
Hin6I GCGC 4 cut(s) 171, 250, 465, 822
HinP1I GCGC 4 cut(s) 171, 250, 465, 822
HindIII AAGCTT 2 cut(s) 598, 1223
HinfI GANTC 4 cut(s) 189, 216, 263, 739
HphI GGTGA 9 cut(s) 40, 94, 472, 602, 646, 908, 941, 1108, 1198
Hpy166II GTNNAC 1 cut(s) 1060
Hpy188I TCNGA 8 cut(s) 188, 194, 215, 448, 517, 522, 581, 1348
Hpy188III TCNNGA 3 cut(s) 296, 437, 726
Hpy8I GTNNAC 1 cut(s) 1060
Hpy99I CGWCG 2 cut(s) 224, 1024
HpyAV CCTTC 8 cut(s) 4, 43, 242, 246, 302, 517, 608, 661
HpyCH4III ACNGT 4 cut(s) 328, 694, 935, 1057
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 4 cut(s) 348, 1261, 1293, 1340
HpyF10VI GCNNNNNNNGC 7 cut(s) 256, 321, 424, 606, 755, 997, 1430
HpyF3I CTNAG 8 cut(s) 28, 273, 337, 578, 1193, 1212, 1347, 1429
HpySE526I ACGT 1 cut(s) 92
Hsp92I GRCGYC 2 cut(s) 465, 1019
Hsp92II CATG 1 cut(s) 1277
HspAI GCGC 4 cut(s) 171, 250, 465, 822
KasI GGCGCC 1 cut(s) 464
KspI CCGCGG 1 cut(s) 463
Kzo9I GATC 4 cut(s) 396, 489, 517, 846
LguI GCTCTTC 1 cut(s) 634
Lsp1109I GCAGC 3 cut(s) 348, 1324, 1433
LweI GCATC 2 cut(s) 185, 1102
MaeI CTAG 1 cut(s) 1418
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 2 cut(s) 636, 929
MalI GATC 4 cut(s) 398, 491, 519, 848
MbiI CCGCTC 1 cut(s) 259
MboI GATC 4 cut(s) 396, 489, 517, 846
MboII GAAGA 9 cut(s) 16, 19, 66, 621, 880, 886, 1111, 1177, 1262
MfeI CAATTG 1 cut(s) 759
MflI RGATCY 2 cut(s) 396, 489
MhlI GDGCHC 2 cut(s) 552, 621
MluCI AATT 5 cut(s) 407, 560, 584, 759, 772
Mly113I GGCGCC 1 cut(s) 465
MlyI GAGTC 4 cut(s) 198, 225, 257, 748
MmeI TCCRAC 3 cut(s) 166, 171, 471
MseI TTAA 3 cut(s) 531, 1170, 1302
MslI CAYNNNNRTG 2 cut(s) 1179, 1319
MspA1I CMGCKG 3 cut(s) 176, 277, 462
MspR9I CCNGG 4 cut(s) 376, 744, 865, 1016
MunI CAATTG 1 cut(s) 759
MvaI CCWGG 1 cut(s) 744
MvnI CGCG 2 cut(s) 252, 462
MwoI GCNNNNNNNGC 7 cut(s) 256, 321, 424, 606, 755, 997, 1430
NarI GGCGCC 1 cut(s) 465
NciI CCSGG 3 cut(s) 376, 865, 1016
NdeII GATC 4 cut(s) 396, 489, 517, 846
NlaIII CATG 1 cut(s) 1277
NlaIV GGNNCC 5 cut(s) 160, 325, 466, 508, 696
NmeAIII GCCGAG 1 cut(s) 653
NmuCI GTSAC 1 cut(s) 929
PaeR7I CTCGAG 1 cut(s) 724
PciSI GCTCTTC 1 cut(s) 634
PcsI WCGNNNNNNNCGW 4 cut(s) 378, 444, 680, 855
PfoI TCCNGGA 1 cut(s) 742
Ple19I CGATCG 1 cut(s) 849
PleI GAGTC 4 cut(s) 197, 224, 257, 747
PluTI GGCGCC 1 cut(s) 468
PpsI GAGTC 4 cut(s) 197, 224, 257, 747
Psp124BI GAGCTC 1 cut(s) 552
Psp6I CCWGG 1 cut(s) 742
PspFI CCCAGC 1 cut(s) 707
PspGI CCWGG 1 cut(s) 742
PspN4I GGNNCC 5 cut(s) 160, 325, 466, 508, 696
PspPI GGNCC 5 cut(s) 144, 153, 158, 254, 280
PsuI RGATCY 2 cut(s) 396, 489
PvuI CGATCG 1 cut(s) 849
PvuII CAGCTG 1 cut(s) 277
RsaI GTAC 3 cut(s) 1061, 1087, 1325
RsaNI GTAC 3 cut(s) 1060, 1086, 1324
RseI CAYNNNNRTG 2 cut(s) 1179, 1319
SacI GAGCTC 1 cut(s) 552
SacII CCGCGG 1 cut(s) 463
SapI GCTCTTC 1 cut(s) 634
SaqAI TTAA 3 cut(s) 531, 1170, 1302
Sau3AI GATC 4 cut(s) 396, 489, 517, 846
Sau96I GGNCC 5 cut(s) 144, 153, 158, 254, 280
SchI GAGTC 4 cut(s) 198, 225, 257, 748
ScrFI CCNGG 4 cut(s) 376, 744, 865, 1016
SduI GDGCHC 2 cut(s) 552, 621
SfaNI GCATC 2 cut(s) 185, 1102
SfoI GGCGCC 1 cut(s) 466
Sfr274I CTCGAG 1 cut(s) 724
Sfr303I CCGCGG 1 cut(s) 463
SgrBI CCGCGG 1 cut(s) 463
SinI GGWCC 4 cut(s) 144, 153, 158, 280
SlaI CTCGAG 1 cut(s) 724
SmiMI CAYNNNNRTG 2 cut(s) 1179, 1319
SmlI CTYRAG 4 cut(s) 356, 724, 1106, 1355
SmoI CTYRAG 4 cut(s) 356, 724, 1106, 1355
Sse9I AATT 5 cut(s) 407, 560, 584, 759, 772
SspDI GGCGCC 1 cut(s) 464
SspMI CTAG 1 cut(s) 1418
SstI GAGCTC 1 cut(s) 552
StyD4I CCNGG 4 cut(s) 374, 742, 863, 1014
TaaI ACNGT 4 cut(s) 328, 694, 935, 1057
TaiI ACGT 1 cut(s) 95
TaqI TCGA 7 cut(s) 261, 438, 683, 725, 839, 845, 978
TaqII GACCGA 3 cut(s) 212, 703, 846
TasI AATT 5 cut(s) 407, 560, 584, 759, 772
TatI WGTACW 2 cut(s) 1059, 1085
TauI GCSGC 7 cut(s) 82, 176, 255, 427, 465, 627, 680
Tru1I TTAA 3 cut(s) 531, 1170, 1302
Tru9I TTAA 3 cut(s) 531, 1170, 1302
TscAI CASTG 1 cut(s) 940
TseFI GTSAC 1 cut(s) 929
TseI GCWGC 3 cut(s) 361, 1337, 1421
Tsp45I GTSAC 1 cut(s) 929
TspDTI ATGAA 3 cut(s) 17, 793, 1262
TspGWI ACGGA 2 cut(s) 422, 624
TspRI CASTG 1 cut(s) 940
VpaK11BI GGWCC 4 cut(s) 144, 153, 158, 280
XapI RAATTY 2 cut(s) 407, 584
XhoI CTCGAG 1 cut(s) 724
XspI CTAG 1 cut(s) 1418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.