Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011085

Physical Location & Seq

Genomic Coordinates Reverse (-)

44970 .. 47059

Gene Structure 2090 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G01080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCGGCCTCCTGCTTCGCAATTCCCTTATCTTCTTCTTCTCGATCGTCTCACAATGCAATTCCCAAATACAAAACCCTAATCTCTTCTTCTTCTTACTCTTACTTAGAATCTCTGAAACTTCAATTCTCTTCTTCCAATTCTTTTCATCACTCTTCTCTTTCTCGTCCCTTTGTAGCTCAACCACTTCAAATCAAGGTCTCTTCTTCAGAATTATCAGTTCTCGATGAAGAAAAAGAAGAAGAAGTAGTTAAAGGAGAAGCAGAACCCAATAAAGATAGTGTCGTCTCCAAAGCAGAACCAGTAAAGAAACCGAGACCTTGCGAGCTCTACGTGTGTAATATCCCTAGAAGCTACGACATTGCTCAGCTTCTTGACATGTTTCAGCCTTTTGGAACTGTAATCTCTGTAGAGGTATCGCGAAATCCTCAGACGGGAGAGAGCCGTGGAAGCGGGTACGTGACAATGGGTTCTATAAACTCTGCCAAAATCGCCATTGCTTCTCTTGATGGAACAGAAGTAGGTGGTCGGGAAATGCGGGTTAGGTACTCTGTTGACATGAATCCAGGAACAAGAAGAAACCCTGAAGTCTTGAACTCAACTCCAAAGAAGATTCTGATGTACGAAAGCCAACACAAGGTCTATGTCGGAAATCTCCCTTGGTTCACACAGCCTGATGGTTTGAGAAACCACTTTAGCAAGTTTGGCACAATCGTAAGCACGAGAGTGTTACATGATCGTAAGACCGGGAGAAACAGAGTCTTTGCCTTTCTTTCTTTTACAAGCGGTGAAGAACGTGATGCGGCTTTATCATTCAATGGAACACAATATGAAGGTCGCAGAATCATCGTCAGAGAAGGTATCGAGAAGAGTGAGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

293

Amino Acids

32.58

Weight (kDa)

9.01

Isoelectric Point (pI)

46.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	110 - 180	1.9e-15	RNA recognition motif
RRM_1	PF00076	214 - 282	3.3e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01080 AT1G01080 AT1G01080
fragaria_vesca	FvH4_7g17690
malus_domestica	MD07G1160000.v1.1
pyrus_communis	pycom07g15630
rosa_chinensis	RchiOBHm_Chr1g0361121
rosa_laevigata	RLG00000027747
rosa_multiflora	Rmu_co8199314.1_g000001 Rmu_co8203846.1_g000001 Rmu_sc0002863.1_g000038 Rmu_sc0020096.1_g000002
rosa_roxburghii	Rroxscaffold_4G00295420
rosa_rugosa	Rorug01G0285700
rosa_samantha	Rh1AG297200 Rh1BG261500 Rh1CG278600 Rh1DG291300
rosa_wichuraiana	Rw1G026250 Rw1G026930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	421
AciI	CCGC	5 cut(s)	5, 453, 538, 786, 803
AcuI	CTGAAG	2 cut(s)	192, 606
AfaI	GTAC	3 cut(s)	458, 548, 623
AfiI	CCNNNNNNNGG	2 cut(s)	434, 637
AflIII	ACRYGT	2 cut(s)	333, 378
AgsI	TTSAA	4 cut(s)	125, 191, 595, 817
AjnI	CCWGG	1 cut(s)	565
AjuI	GAANNNNNNNTTGG	2 cut(s)	643, 675
AleI	CACNNNNGTG	1 cut(s)	725
AluBI	AGCT	4 cut(s)	179, 328, 354, 370
AluI	AGCT	4 cut(s)	179, 328, 354, 370
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	4 cut(s)	54, 205, 292, 310
AoxI	GGCC	1 cut(s)	6
AsuC2I	CCSGG	1 cut(s)	748
AsuHPI	GGTGA	1 cut(s)	800
BanII	GRGCYC	1 cut(s)	330
BauI	CACGAG	1 cut(s)	721
Bbv12I	GWGCWC	1 cut(s)	330
BccI	CCATC	2 cut(s)	503, 671
BceAI	ACGGC	1 cut(s)	429
BcgI	CGANNNNNNTGC	2 cut(s)	829, 863
BciT130I	CCWGG	1 cut(s)	567
BcnI	CCSGG	1 cut(s)	748
BcoDI	GTCTC	4 cut(s)	54, 205, 292, 310
BfaI	CTAG	1 cut(s)	348
BfmI	CTRYAG	1 cut(s)	408
BisI	GCNGC	2 cut(s)	6, 804
BlpI	GCTNAGC	1 cut(s)	366
BlsI	GCNGC	2 cut(s)	7, 805
Bme1390I	CCNGG	2 cut(s)	567, 748
BmrFI	CCNGG	2 cut(s)	567, 748
BmsI	GCATC	1 cut(s)	790
Bpu1102I	GCTNAGC	1 cut(s)	366
BpuMI	CCSGG	1 cut(s)	748
BsaAI	YACGTR	2 cut(s)	334, 460
BsaI	GGTCTC	2 cut(s)	205, 310
BsaJI	CCNNGG	2 cut(s)	445, 659
Bsc4I	CCNNNNNNNGG	2 cut(s)	434, 637
Bse1I	ACTGG	1 cut(s)	302
Bse3DI	GCAATG	2 cut(s)	360, 495
BseBI	CCWGG	1 cut(s)	567
BseDI	CCNNGG	2 cut(s)	445, 659
BseLI	CCNNNNNNNGG	2 cut(s)	434, 637
BseMI	GCAATG	2 cut(s)	360, 495
BseMII	CTCAG	2 cut(s)	380, 443
BseNI	ACTGG	1 cut(s)	302
Bsh1236I	CGCG	1 cut(s)	421
Bsh1285I	CGRYCG	1 cut(s)	47
BshFI	GGCC	1 cut(s)	8
BsiEI	CGRYCG	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	330
BsiSI	CCGG	1 cut(s)	747
BslFI	GGGAC	1 cut(s)	153
BslI	CCNNNNNNNGG	2 cut(s)	434, 637
BsmAI	GTCTC	4 cut(s)	54, 205, 292, 310
BsmBI	CGTCTC	2 cut(s)	54, 292
BsmFI	GGGAC	1 cut(s)	153
BsnI	GGCC	1 cut(s)	8
Bso31I	GGTCTC	2 cut(s)	205, 310
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	2 cut(s)	44, 736
Bsp1720I	GCTNAGC	1 cut(s)	366
Bsp68I	TCGCGA	1 cut(s)	421
BspACI	CCGC	5 cut(s)	5, 453, 538, 786, 803
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	2 cut(s)	379, 442
BspFNI	CGCG	1 cut(s)	421
BspTNI	GGTCTC	2 cut(s)	205, 310
BsrDI	GCAATG	2 cut(s)	360, 495
BsrI	ACTGG	1 cut(s)	302
BssECI	CCNNGG	2 cut(s)	445, 659
BssMI	GATC	2 cut(s)	44, 736
BssSI	CACGAG	1 cut(s)	721
BssT1I	CCWWGG	1 cut(s)	659
Bst2BI	CACGAG	1 cut(s)	721
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	1 cut(s)	400
Bst6I	CTCTTC	5 cut(s)	91, 136, 160, 208, 863
BstBAI	YACGTR	2 cut(s)	334, 460
BstC8I	GCNNGC	1 cut(s)	326
BstDEI	CTNAG	3 cut(s)	106, 366, 429
BstDSI	CCRYGG	1 cut(s)	445
BstFNI	CGCG	1 cut(s)	421
BstKTI	GATC	2 cut(s)	47, 739
BstMAI	GTCTC	4 cut(s)	54, 205, 292, 310
BstMBI	GATC	2 cut(s)	44, 736
BstMCI	CGRYCG	1 cut(s)	47
BstMWI	GCNNNNNNNGC	3 cut(s)	450, 491, 705
BstNI	CCWGG	1 cut(s)	567
BstNSI	RCATGY	1 cut(s)	382
BstSCI	CCNGG	2 cut(s)	565, 746
BstSFI	CTRYAG	1 cut(s)	408
BstUI	CGCG	1 cut(s)	421
BsuRI	GGCC	1 cut(s)	8
BtgI	CCRYGG	1 cut(s)	445
BtuMI	TCGCGA	1 cut(s)	421
Cac8I	GCNNGC	1 cut(s)	326
Csp6I	GTAC	3 cut(s)	457, 547, 622
CviAII	CATG	3 cut(s)	379, 559, 734
CviQI	GTAC	3 cut(s)	457, 547, 622
DdeI	CTNAG	3 cut(s)	106, 366, 429
DpnI	GATC	2 cut(s)	46, 738
DpnII	GATC	2 cut(s)	44, 736
Eam1104I	CTCTTC	5 cut(s)	91, 136, 160, 208, 863
EarI	CTCTTC	5 cut(s)	91, 136, 160, 208, 863
Ecl136II	GAGCTC	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	659
Eco24I	GRGCYC	1 cut(s)	330
Eco31I	GGTCTC	2 cut(s)	205, 310
Eco53kI	GAGCTC	1 cut(s)	328
Eco57I	CTGAAG	2 cut(s)	192, 606
EcoICRI	GAGCTC	1 cut(s)	328
EcoRII	CCWGG	1 cut(s)	565
EcoT14I	CCWWGG	1 cut(s)	659
EcoT38I	GRGCYC	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	659
Esp3I	CGTCTC	2 cut(s)	54, 292
FaeI	CATG	3 cut(s)	382, 562, 737
FaiI	YATR	6 cut(s)	380, 476, 560, 645, 735, 831
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	3 cut(s)	378, 558, 733
FauI	CCCGC	2 cut(s)	446, 531
Fnu4HI	GCNGC	2 cut(s)	6, 804
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	2 cut(s)	6, 804
FspBI	CTAG	1 cut(s)	348
GluI	GCNGC	2 cut(s)	6, 804
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	747
Hin1II	CATG	3 cut(s)	382, 562, 737
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HinfI	GANTC	6 cut(s)	110, 562, 613, 759, 843, 875
HpaII	CCGG	1 cut(s)	747
HphI	GGTGA	1 cut(s)	800
Hpy166II	GTNNAC	2 cut(s)	556, 666
Hpy188I	TCNGA	6 cut(s)	117, 211, 432, 618, 650, 854
Hpy188III	TCNNGA	8 cut(s)	42, 224, 374, 420, 506, 530, 592, 865
Hpy8I	GTNNAC	2 cut(s)	556, 666
HpyAV	CCTTC	2 cut(s)	827, 851
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4IV	ACGT	3 cut(s)	333, 459, 796
HpyCH4V	TGCA	1 cut(s)	59
HpyF10VI	GCNNNNNNNGC	3 cut(s)	450, 491, 705
HpyF3I	CTNAG	3 cut(s)	106, 366, 429
HpySE526I	ACGT	3 cut(s)	333, 459, 796
Hsp92II	CATG	3 cut(s)	382, 562, 737
Kzo9I	GATC	2 cut(s)	44, 736
LpnPI	CCDG	7 cut(s)	25, 315, 552, 579, 597, 687, 760
LweI	GCATC	1 cut(s)	790
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	3 cut(s)	333, 459, 796
MaeIII	GTNAC	2 cut(s)	460, 729
MalI	GATC	2 cut(s)	46, 738
MboI	GATC	2 cut(s)	44, 736
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	5 cut(s)	21, 60, 125, 139, 212
MlyI	GAGTC	1 cut(s)	768
MmeI	TCCRAC	1 cut(s)	628
MnlI	CCTC	3 cut(s)	19, 406, 438
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	725
MspI	CCGG	1 cut(s)	747
MspR9I	CCNGG	2 cut(s)	567, 748
MvaI	CCWGG	1 cut(s)	567
MvnI	CGCG	1 cut(s)	421
MwoI	GCNNNNNNNGC	3 cut(s)	450, 491, 705
NciI	CCSGG	1 cut(s)	748
NdeII	GATC	2 cut(s)	44, 736
NlaIII	CATG	3 cut(s)	382, 562, 737
NmuCI	GTSAC	1 cut(s)	460
NruI	TCGCGA	1 cut(s)	421
NspI	RCATGY	1 cut(s)	382
OliI	CACNNNNGTG	1 cut(s)	725
PciI	ACATGT	1 cut(s)	378
PfeI	GAWTC	4 cut(s)	110, 562, 613, 843
PfoI	TCCNGGA	1 cut(s)	565
PkrI	GCNGC	2 cut(s)	7, 805
Ple19I	CGATCG	1 cut(s)	47
PleI	GAGTC	1 cut(s)	767
PpsI	GAGTC	1 cut(s)	767
Ppu21I	YACGTR	2 cut(s)	334, 460
PscI	ACATGT	1 cut(s)	378
Psp124BI	GAGCTC	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	565
PspGI	CCWGG	1 cut(s)	565
PvuI	CGATCG	1 cut(s)	47
RruI	TCGCGA	1 cut(s)	421
RsaI	GTAC	3 cut(s)	458, 548, 623
RsaNI	GTAC	3 cut(s)	457, 547, 622
RseI	CAYNNNNRTG	1 cut(s)	725
SacI	GAGCTC	1 cut(s)	330
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	2 cut(s)	6, 804
Sau3AI	GATC	2 cut(s)	44, 736
SchI	GAGTC	1 cut(s)	768
ScrFI	CCNGG	2 cut(s)	567, 748
SduI	GDGCHC	1 cut(s)	330
SfaNI	GCATC	1 cut(s)	790
SfcI	CTRYAG	1 cut(s)	408
SmiMI	CAYNNNNRTG	1 cut(s)	725
Sse9I	AATT	5 cut(s)	21, 60, 125, 139, 212
SsiI	CCGC	5 cut(s)	5, 453, 538, 786, 803
SspMI	CTAG	1 cut(s)	348
SstI	GAGCTC	1 cut(s)	330
StyD4I	CCNGG	2 cut(s)	565, 746
StyI	CCWWGG	1 cut(s)	659
TaaI	ACNGT	1 cut(s)	400
TaiI	ACGT	3 cut(s)	336, 462, 799
TaqI	TCGA	3 cut(s)	43, 225, 864
TasI	AATT	5 cut(s)	21, 60, 125, 139, 212
TauI	GCSGC	2 cut(s)	8, 806
TfiI	GAWTC	4 cut(s)	110, 562, 613, 843
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TseFI	GTSAC	1 cut(s)	460
Tsp45I	GTSAC	1 cut(s)	460
TspDTI	ATGAA	4 cut(s)	137, 243, 575, 846
XceI	RCATGY	1 cut(s)	382
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.