Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0011085

Physical Location & Seq

Genomic Coordinates Forward (+)

23392451 .. 23393957

Gene Structure 1507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1160000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCGGCCACTTGCTTAAACCTAACACCCACTCTATCTTCCTCTTGGATTACACCAAAACGCACCGTTTCAAATTGGGTCTCGTCGCCTTTATTGCAGCAGAAGATTAAGTACCCCAATTTGAAGGCTGGGGTTTTCACGGCGTTGGCTGTGGTGGAAGAGCGGGAGGGAGGCCTAGTCACTGACGACGGAGGAGTGGCGGAGTACGAGTACGACAGTCGAAACGACGACGATTCGGATGGGGGATTGGACGACAAGCAAGAGCAGTCAAGACCCTGTGAGCTGTACGTGTGCAATATTCCGAGAAGCATTGATGTTCCGGACCTGATGGAAATGTTCAACCCTCACGGGACTGTTTTCTCCGTCGAGATTTGCAGGAGCCCGGATACTGGGCTCAGCCGCGGATGTGGCTACGTCACCATGGGATCCATGGACGCTGCGAAAACCGCCATTGCTGCATTGGATCGATCTGATGTTGGAGGGAGGGAAATGCGGGTGAGATTTTCGGTTCATATGAATCCGAAGAGGAAGAACACCGAGGCATTGAATTCATCACCGGTGAAAAACATGGTGTATGAGAGCCCTCACAAACTCTACGTCGGCAACCTTGCGCGGGCTGTCCAGCCTCATGTTTTGAGAAGCCATTTTAGCCAGTTTGGGACTGTAGCTAGCGCAAAAGTGTTGCACGACCGCAAGGCAGGGAAGAATCGCGCTTATGGGTTCCTTTCTTTCTCTTCGGCTGCAGAACGCGATGCAGCAATGTCGTTAAATGGAACGGAGTTCTGCGGTCGGAGAATAGTGGTTAGAGGACTTCCAGAAACGACTTACACTGCAGCAAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

282

Amino Acids

30.76

Weight (kDa)

8.17

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	95 - 165	1.5e-11	RNA recognition motif
RRM_1	PF00076	198 - 266	7.4e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01080 AT1G01080 AT1G01080
fragaria_vesca	FvH4_7g17690
malus_domestica	MD07G1160000.v1.1
pyrus_communis	pycom07g15630
rosa_chinensis	RchiOBHm_Chr1g0361121
rosa_laevigata	RLG00000027747
rosa_multiflora	Rmu_co8199314.1_g000001 Rmu_co8203846.1_g000001 Rmu_sc0002863.1_g000038 Rmu_sc0020096.1_g000002
rosa_roxburghii	Rroxscaffold_4G00295420
rosa_rugosa	Rorug01G0285700
rosa_samantha	Rh1AG297200 Rh1BG261500 Rh1CG278600 Rh1DG291300
rosa_wichuraiana	Rw1G026250 Rw1G026930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	163
AccII	CGCG	4 cut(s)	402, 613, 711, 750
AccIII	TCCGGA	1 cut(s)	319
AclWI	GGATC	3 cut(s)	420, 433, 471
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	547
AfaI	GTAC	4 cut(s)	113, 206, 212, 287
AfiI	CCNNNNNNNGG	2 cut(s)	389, 613
AflIII	ACRYGT	1 cut(s)	288
AgeI	ACCGGT	1 cut(s)	556
AgsI	TTSAA	4 cut(s)	72, 124, 340, 547
AluBI	AGCT	2 cut(s)	283, 668
AluI	AGCT	2 cut(s)	283, 668
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	3 cut(s)	420, 433, 471
Aor13HI	TCCGGA	1 cut(s)	319
AoxI	GGCC	2 cut(s)	6, 172
ApeKI	GCWGC	6 cut(s)	97, 437, 455, 740, 755, 833
ApoI	RAATTY	1 cut(s)	547
ArsI	GACNNNNNNTTYG	2 cut(s)	582, 614
AsiGI	ACCGGT	1 cut(s)	556
AspLEI	GCGC	3 cut(s)	613, 674, 713
AspS9I	GGNCC	1 cut(s)	322
AsuC2I	CCSGG	1 cut(s)	383
AsuHPI	GGTGA	4 cut(s)	409, 508, 546, 571
AsuNHI	GCTAGC	1 cut(s)	668
AvaII	GGWCC	1 cut(s)	322
BamHI	GGATCC	1 cut(s)	425
BanII	GRGCYC	3 cut(s)	383, 396, 584
BarI	GAAGNNNNNNTAC	2 cut(s)	95, 127
BbvI	GCAGC	5 cut(s)	109, 424, 442, 727, 767
BccI	CCATC	2 cut(s)	233, 322
BceAI	ACGGC	1 cut(s)	156
BcgI	CGANNNNNNTGC	2 cut(s)	744, 778
BciVI	GTATCC	1 cut(s)	379
BcnI	CCSGG	1 cut(s)	383
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	2 cut(s)	176, 669
BfmI	CTRYAG	3 cut(s)	663, 741, 831
BfuI	GTATCC	1 cut(s)	379
BisI	GCNGC	8 cut(s)	6, 98, 400, 438, 456, 741, 756, 834
BlpI	GCTNAGC	1 cut(s)	395
BlsI	GCNGC	8 cut(s)	7, 99, 401, 439, 457, 742, 757, 835
Bme1390I	CCNGG	1 cut(s)	383
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	3 cut(s)	380, 427, 722
BmrFI	CCNGG	1 cut(s)	383
BmrI	ACTGGG	1 cut(s)	399
BmsI	GCATC	1 cut(s)	742
BmtI	GCTAGC	1 cut(s)	672
BmuI	ACTGGG	1 cut(s)	399
Bpu1102I	GCTNAGC	1 cut(s)	395
BpuMI	CCSGG	1 cut(s)	383
Bsa29I	ATCGAT	1 cut(s)	466
BsaAI	YACGTR	1 cut(s)	289
BsaI	GGTCTC	1 cut(s)	85
BsaJI	CCNNGG	4 cut(s)	400, 420, 429, 537
BsaWI	WCCGGW	2 cut(s)	319, 556
BsaXI	ACNNNNNCTCC	4 cut(s)	162, 192, 194, 224
Bsc4I	CCNNNNNNNGG	2 cut(s)	389, 613
Bse118I	RCCGGY	1 cut(s)	556
Bse1I	ACTGG	2 cut(s)	394, 652
Bse3DI	GCAATG	2 cut(s)	450, 765
BseAI	TCCGGA	1 cut(s)	319
BseCI	ATCGAT	1 cut(s)	466
BseDI	CCNNGG	4 cut(s)	400, 420, 429, 537
BseGI	GGATG	2 cut(s)	244, 410
BseLI	CCNNNNNNNGG	2 cut(s)	389, 613
BseMI	GCAATG	2 cut(s)	450, 765
BseMII	CTCAG	1 cut(s)	409
BseNI	ACTGG	2 cut(s)	394, 652
BseRI	GAGGAG	1 cut(s)	207
BseXI	GCAGC	5 cut(s)	109, 424, 442, 727, 767
BseYI	CCCAGC	1 cut(s)	128
Bsh1236I	CGCG	4 cut(s)	402, 613, 711, 750
Bsh1285I	CGRYCG	2 cut(s)	691, 790
BshFI	GGCC	2 cut(s)	8, 174
BshTI	ACCGGT	1 cut(s)	556
BshVI	ATCGAT	1 cut(s)	466
BsiEI	CGRYCG	2 cut(s)	691, 790
BsiSI	CCGG	3 cut(s)	320, 383, 557
BslFI	GGGAC	2 cut(s)	364, 673
BslI	CCNNNNNNNGG	2 cut(s)	389, 613
BsmAI	GTCTC	1 cut(s)	85
BsmFI	GGGAC	2 cut(s)	364, 673
BsnI	GGCC	2 cut(s)	8, 174
Bso31I	GGTCTC	1 cut(s)	85
Bsp1286I	GDGCHC	3 cut(s)	383, 396, 584
Bsp13I	TCCGGA	1 cut(s)	319
Bsp143I	GATC	3 cut(s)	425, 463, 467
Bsp1720I	GCTNAGC	1 cut(s)	395
Bsp19I	CCATGG	2 cut(s)	420, 429
BspANI	GGCC	2 cut(s)	8, 174
BspCNI	CTCAG	1 cut(s)	408
BspDI	ATCGAT	1 cut(s)	466
BspEI	TCCGGA	1 cut(s)	319
BspFNI	CGCG	4 cut(s)	402, 613, 711, 750
BspLI	GGNNCC	3 cut(s)	380, 427, 722
BspMAI	CTGCAG	2 cut(s)	745, 835
BspOI	GCTAGC	1 cut(s)	672
BspPI	GGATC	3 cut(s)	420, 433, 471
BspQI	GCTCTTC	1 cut(s)	153
BspTNI	GGTCTC	1 cut(s)	85
BsrBI	CCGCTC	1 cut(s)	163
BsrDI	GCAATG	2 cut(s)	450, 765
BsrFI	RCCGGY	1 cut(s)	556
BsrI	ACTGG	2 cut(s)	394, 652
BssAI	RCCGGY	1 cut(s)	556
BssECI	CCNNGG	4 cut(s)	400, 420, 429, 537
BssMI	GATC	3 cut(s)	425, 463, 467
BssT1I	CCWWGG	2 cut(s)	420, 429
Bst4CI	ACNGT	4 cut(s)	67, 218, 355, 664
Bst6I	CTCTTC	3 cut(s)	153, 518, 739
BstBAI	YACGTR	1 cut(s)	289
BstC8I	GCNNGC	2 cut(s)	615, 670
BstDEI	CTNAG	1 cut(s)	395
BstDSI	CCRYGG	3 cut(s)	400, 420, 429
BstF5I	GGATG	2 cut(s)	244, 410
BstFNI	CGCG	4 cut(s)	402, 613, 711, 750
BstHHI	GCGC	3 cut(s)	613, 674, 713
BstKTI	GATC	3 cut(s)	428, 466, 470
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	3 cut(s)	425, 463, 467
BstMCI	CGRYCG	2 cut(s)	691, 790
BstMWI	GCNNNNNNNGC	5 cut(s)	94, 408, 446, 455, 648
BstSCI	CCNGG	1 cut(s)	381
BstSFI	CTRYAG	3 cut(s)	663, 741, 831
BstUI	CGCG	4 cut(s)	402, 613, 711, 750
BstV1I	GCAGC	5 cut(s)	109, 424, 442, 727, 767
BstX2I	RGATCY	1 cut(s)	425
BstYI	RGATCY	1 cut(s)	425
Bsu15I	ATCGAT	1 cut(s)	466
BsuI	GTATCC	1 cut(s)	379
BsuRI	GGCC	2 cut(s)	8, 174
BsuTUI	ATCGAT	1 cut(s)	466
BtgI	CCRYGG	3 cut(s)	400, 420, 429
BtgZI	GCGATG	1 cut(s)	765
BtsCI	GGATG	2 cut(s)	244, 410
BtsI	GCAGTG	1 cut(s)	828
BtsIMutI	CAGTG	2 cut(s)	180, 828
Cac8I	GCNNGC	2 cut(s)	615, 670
CfoI	GCGC	3 cut(s)	613, 674, 713
Cfr10I	RCCGGY	1 cut(s)	556
Cfr13I	GGNCC	1 cut(s)	322
Cfr42I	CCGCGG	1 cut(s)	403
ClaI	ATCGAT	1 cut(s)	466
CseI	GACGC	1 cut(s)	443
Csp6I	GTAC	4 cut(s)	112, 205, 211, 286
CspAI	ACCGGT	1 cut(s)	556
CviAII	CATG	4 cut(s)	421, 430, 568, 629
CviQI	GTAC	4 cut(s)	112, 205, 211, 286
DdeI	CTNAG	1 cut(s)	395
DpnI	GATC	3 cut(s)	427, 465, 469
DpnII	GATC	3 cut(s)	425, 463, 467
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	3 cut(s)	153, 518, 739
EarI	CTCTTC	3 cut(s)	153, 518, 739
EciI	GGCGGA	1 cut(s)	215
Eco130I	CCWWGG	2 cut(s)	420, 429
Eco147I	AGGCCT	1 cut(s)	174
Eco24I	GRGCYC	3 cut(s)	383, 396, 584
Eco31I	GGTCTC	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	322
EcoRI	GAATTC	1 cut(s)	547
EcoT14I	CCWWGG	2 cut(s)	420, 429
EcoT38I	GRGCYC	3 cut(s)	383, 396, 584
ErhI	CCWWGG	2 cut(s)	420, 429
FaeI	CATG	4 cut(s)	424, 433, 571, 632
FaiI	YATR	8 cut(s)	422, 431, 513, 515, 569, 576, 630, 717
FaqI	GGGAC	2 cut(s)	364, 673
FatI	CATG	4 cut(s)	420, 429, 567, 628
FauI	CCCGC	3 cut(s)	156, 486, 606
FauNDI	CATATG	1 cut(s)	513
Fnu4HI	GCNGC	8 cut(s)	6, 98, 400, 438, 456, 741, 756, 834
FokI	GGATG	2 cut(s)	251, 417
FriOI	GRGCYC	3 cut(s)	383, 396, 584
Fsp4HI	GCNGC	8 cut(s)	6, 98, 400, 438, 456, 741, 756, 834
FspBI	CTAG	2 cut(s)	176, 669
GlaI	GCGC	3 cut(s)	612, 673, 712
GluI	GCNGC	8 cut(s)	6, 98, 400, 438, 456, 741, 756, 834
GsaI	CCCAGC	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	8, 174
HapII	CCGG	3 cut(s)	320, 383, 557
HgaI	GACGC	1 cut(s)	443
HhaI	GCGC	3 cut(s)	613, 674, 713
Hin1II	CATG	4 cut(s)	424, 433, 571, 632
Hin6I	GCGC	3 cut(s)	611, 672, 711
HinP1I	GCGC	3 cut(s)	611, 672, 711
HinfI	GANTC	3 cut(s)	233, 517, 706
HpaII	CCGG	3 cut(s)	320, 383, 557
HphI	GGTGA	4 cut(s)	409, 508, 546, 571
Hpy188I	TCNGA	5 cut(s)	238, 303, 472, 522, 792
Hpy188III	TCNNGA	4 cut(s)	270, 320, 367, 815
Hpy99I	CGWCG	6 cut(s)	88, 191, 230, 233, 368, 602
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	4 cut(s)	67, 218, 355, 664
HpyCH4IV	ACGT	3 cut(s)	288, 414, 597
HpyCH4V	TGCA	8 cut(s)	97, 294, 375, 458, 685, 743, 755, 833
HpyF10VI	GCNNNNNNNGC	5 cut(s)	94, 408, 446, 455, 648
HpyF3I	CTNAG	1 cut(s)	395
HpySE526I	ACGT	3 cut(s)	288, 414, 597
Hsp92II	CATG	4 cut(s)	424, 433, 571, 632
HspAI	GCGC	3 cut(s)	611, 672, 711
Kpn2I	TCCGGA	1 cut(s)	319
KspI	CCGCGG	1 cut(s)	403
Kzo9I	GATC	3 cut(s)	425, 463, 467
LguI	GCTCTTC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	378
Lsp1109I	GCAGC	5 cut(s)	109, 424, 442, 727, 767
LweI	GCATC	1 cut(s)	742
MaeI	CTAG	2 cut(s)	176, 669
MaeII	ACGT	3 cut(s)	288, 414, 597
MaeIII	GTNAC	2 cut(s)	178, 415
MalI	GATC	3 cut(s)	427, 465, 469
MbiI	CCGCTC	1 cut(s)	163
MboI	GATC	3 cut(s)	425, 463, 467
MboII	GAAGA	7 cut(s)	30, 115, 170, 535, 541, 715, 726
MflI	RGATCY	1 cut(s)	425
MhlI	GDGCHC	3 cut(s)	383, 396, 584
MluCI	AATT	3 cut(s)	73, 118, 547
MmeI	TCCRAC	2 cut(s)	457, 770
MroI	TCCGGA	1 cut(s)	319
MseI	TTAA	3 cut(s)	17, 108, 767
MspA1I	CMGCKG	1 cut(s)	402
MspI	CCGG	3 cut(s)	320, 383, 557
MspR9I	CCNGG	1 cut(s)	383
MvnI	CGCG	4 cut(s)	402, 613, 711, 750
MwoI	GCNNNNNNNGC	5 cut(s)	94, 408, 446, 455, 648
NciI	CCSGG	1 cut(s)	383
NcoI	CCATGG	2 cut(s)	420, 429
NdeI	CATATG	1 cut(s)	513
NdeII	GATC	3 cut(s)	425, 463, 467
NheI	GCTAGC	1 cut(s)	668
NlaIII	CATG	4 cut(s)	424, 433, 571, 632
NlaIV	GGNNCC	3 cut(s)	380, 427, 722
NmuCI	GTSAC	2 cut(s)	178, 415
PceI	AGGCCT	1 cut(s)	174
PciSI	GCTCTTC	1 cut(s)	153
PfeI	GAWTC	3 cut(s)	233, 517, 706
PinAI	ACCGGT	1 cut(s)	556
PkrI	GCNGC	8 cut(s)	7, 99, 401, 439, 457, 742, 757, 835
Ppu21I	YACGTR	1 cut(s)	289
PspFI	CCCAGC	1 cut(s)	128
PspN4I	GGNNCC	3 cut(s)	380, 427, 722
PspPI	GGNCC	1 cut(s)	322
PstI	CTGCAG	2 cut(s)	745, 835
PsuI	RGATCY	1 cut(s)	425
RsaI	GTAC	4 cut(s)	113, 206, 212, 287
RsaNI	GTAC	4 cut(s)	112, 205, 211, 286
SacII	CCGCGG	1 cut(s)	403
SapI	GCTCTTC	1 cut(s)	153
SaqAI	TTAA	3 cut(s)	17, 108, 767
SatI	GCNGC	8 cut(s)	6, 98, 400, 438, 456, 741, 756, 834
Sau3AI	GATC	3 cut(s)	425, 463, 467
Sau96I	GGNCC	1 cut(s)	322
ScrFI	CCNGG	1 cut(s)	383
SduI	GDGCHC	3 cut(s)	383, 396, 584
SetI	ASST	8 cut(s)	24, 285, 291, 327, 417, 600, 609, 670
SfaNI	GCATC	1 cut(s)	742
SfcI	CTRYAG	3 cut(s)	663, 741, 831
Sfr303I	CCGCGG	1 cut(s)	403
SgrAI	CRCCGGYG	1 cut(s)	556
SgrBI	CCGCGG	1 cut(s)	403
SinI	GGWCC	1 cut(s)	322
Sse9I	AATT	3 cut(s)	73, 118, 547
SseBI	AGGCCT	1 cut(s)	174
SspI	AATATT	1 cut(s)	298
SspMI	CTAG	2 cut(s)	176, 669
StuI	AGGCCT	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	381
StyI	CCWWGG	2 cut(s)	420, 429
TaaI	ACNGT	4 cut(s)	67, 218, 355, 664
TaiI	ACGT	3 cut(s)	291, 417, 600
TaqI	TCGA	3 cut(s)	220, 366, 466
TasI	AATT	3 cut(s)	73, 118, 547
TauI	GCSGC	2 cut(s)	8, 402
TfiI	GAWTC	3 cut(s)	233, 517, 706
Tru1I	TTAA	3 cut(s)	17, 108, 767
Tru9I	TTAA	3 cut(s)	17, 108, 767
TscAI	CASTG	2 cut(s)	187, 835
TseFI	GTSAC	2 cut(s)	178, 415
TseI	GCWGC	6 cut(s)	97, 437, 455, 740, 755, 833
Tsp45I	GTSAC	2 cut(s)	178, 415
TspDTI	ATGAA	3 cut(s)	500, 530, 540
TspGWI	ACGGA	3 cut(s)	204, 352, 791
TspRI	CASTG	2 cut(s)	187, 835
VpaK11BI	GGWCC	1 cut(s)	322
XapI	RAATTY	1 cut(s)	547
XcmI	CCANNNNNNNNNTGG	2 cut(s)	427, 457
XspI	CTAG	2 cut(s)	176, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.