Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0011085

Physical Location & Seq

Genomic Coordinates Forward (+)

14942002 .. 14943641

Gene Structure 1640 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g17690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCTATGGCAGCCACTTGCTTGAACATAGCACCCTCTCCGCCCTCTTGGCCTATCAACAACGCCAGCCCCGGACTCCCAGTTGCACTGAAACGATTCGTTTTGAGTTCCGTTCCACTCTCTTTATCATACCCGAAGAACAACAGAGGTGGAGTCTTGACGGCGTTGGCCGTAGTGGAAGAAGAACATGCGGCGGTGAGTTTAGTGGCTGAGGAGGAAGAACAAGTGGTAGGCGATAATGGGTATGAAGAGTGCGAGAGGCATAATGACGACGACGTTTCAGGGGAGGAGGGATTGGAAATGGAGAAACAGAATCGGCAGCCAAGACCGTGTGAGCTGTACGTGTGCAATCTTCCGAGAAGCTCTGACATTGAGGACTTGATGGAGATGTTCAAGCCTCACGGGACTGTTTTCTCCGTCGAGGTTTGCCGGAGTCCGGAGACTGGTTTAAGCAGAGGCTGTGGTTATGTTACAATGGGGTCGATCGATTCTGCAAAAGCCGCCATTGCTGCATTGGATGGGATTGATGTAGCAGGGAGGGAGATGCGGGTTAGATTTTCGGTTCATATGAGTCCGAGGACTAGGAACTCTGAGGCATTGAATTCGACACCGGTGAAGAACTTGGTGTACGAAAGCCCTTATAAGCTCTATGTTGGTAACCTTTCTTGGGCTGTCCAGCCTCATGCTTTGAGGAGCCATTTCAGCAAGTTTGGGACTGTGGCTAGTGCTAGAGTGTTGCATGATCGAAAAGCAGGGAAGAACCGGGCTTATGGGTTTATCTCGTTCTCTTCGGCTGCAGAGCGTGATAAAGCGGCCTCTTTGGATGGAACGGAGTTTTGTGGTAGGAGGATTATTATTAGAGGACTTAAAGAAAGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

294

Amino Acids

32.0

Weight (kDa)

6.2

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	113 - 183	2.8e-14	RNA recognition motif
RRM_1	PF00076	216 - 284	3.3e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01080 AT1G01080 AT1G01080
fragaria_vesca	FvH4_7g17690
malus_domestica	MD07G1160000.v1.1
pyrus_communis	pycom07g15630
rosa_chinensis	RchiOBHm_Chr1g0361121
rosa_laevigata	RLG00000027747
rosa_multiflora	Rmu_co8199314.1_g000001 Rmu_co8203846.1_g000001 Rmu_sc0002863.1_g000038 Rmu_sc0020096.1_g000002
rosa_roxburghii	Rroxscaffold_4G00295420
rosa_rugosa	Rorug01G0285700
rosa_samantha	Rh1AG297200 Rh1BG261500 Rh1CG278600 Rh1DG291300
rosa_wichuraiana	Rw1G026250 Rw1G026930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	642
AccIII	TCCGGA	1 cut(s)	436
AciI	CCGC	6 cut(s)	41, 191, 194, 501, 547, 812
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	601
AfaI	GTAC	2 cut(s)	341, 629
AfiI	CCNNNNNNNGG	3 cut(s)	436, 443, 667
AflIII	ACRYGT	1 cut(s)	342
AgeI	ACCGGT	1 cut(s)	610
AgsI	TTSAA	3 cut(s)	25, 394, 601
AluBI	AGCT	3 cut(s)	337, 363, 646
AluI	AGCT	3 cut(s)	337, 363, 646
Alw26I	GTCTC	1 cut(s)	434
AlwNI	CAGNNNCTG	1 cut(s)	459
Aor13HI	TCCGGA	1 cut(s)	436
AoxI	GGCC	3 cut(s)	50, 168, 813
ApeKI	GCWGC	4 cut(s)	11, 319, 509, 794
ApoI	RAATTY	1 cut(s)	601
AsiGI	ACCGGT	1 cut(s)	610
Asp700I	GAANNNNTTC	1 cut(s)	95
AsuC2I	CCSGG	2 cut(s)	72, 764
AsuHPI	GGTGA	2 cut(s)	208, 625
BbvCI	CCTCAGC	1 cut(s)	210
BbvI	GCAGC	4 cut(s)	23, 331, 496, 781
BccI	CCATC	3 cut(s)	376, 512, 818
BceAI	ACGGC	2 cut(s)	155, 177
BcgI	CGANNNNNNTGC	2 cut(s)	585, 619
BcnI	CCSGG	2 cut(s)	72, 764
BcoDI	GTCTC	1 cut(s)	434
BfaI	CTAG	3 cut(s)	582, 723, 729
BfmI	CTRYAG	1 cut(s)	795
BglI	GCCNNNNNGGC	1 cut(s)	49
BisI	GCNGC	7 cut(s)	12, 192, 320, 501, 510, 795, 813
BlsI	GCNGC	7 cut(s)	13, 193, 321, 502, 511, 796, 814
Bme1390I	CCNGG	2 cut(s)	72, 764
BmiI	GGNNCC	1 cut(s)	695
BmrFI	CCNGG	2 cut(s)	72, 764
BmrI	ACTGGG	1 cut(s)	74
BmsI	GCATC	1 cut(s)	534
BmuI	ACTGGG	1 cut(s)	74
Bpu10I	CCTNAGC	1 cut(s)	210
BpuMI	CCSGG	2 cut(s)	72, 764
Bsa29I	ATCGAT	1 cut(s)	486
BsaAI	YACGTR	1 cut(s)	343
BsaJI	CCNNGG	2 cut(s)	70, 575
BsaWI	WCCGGW	2 cut(s)	436, 610
Bsc4I	CCNNNNNNNGG	3 cut(s)	436, 443, 667
Bse118I	RCCGGY	1 cut(s)	610
Bse1I	ACTGG	2 cut(s)	80, 448
Bse3DI	GCAATG	1 cut(s)	504
BseAI	TCCGGA	1 cut(s)	436
BseCI	ATCGAT	1 cut(s)	486
BseDI	CCNNGG	2 cut(s)	70, 575
BseGI	GGATG	2 cut(s)	523, 829
BseLI	CCNNNNNNNGG	3 cut(s)	436, 443, 667
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	2 cut(s)	201, 582
BseNI	ACTGG	2 cut(s)	80, 448
BseRI	GAGGAG	3 cut(s)	227, 302, 706
BseXI	GCAGC	4 cut(s)	23, 331, 496, 781
Bsh1285I	CGRYCG	1 cut(s)	486
BshFI	GGCC	3 cut(s)	52, 170, 815
BshTI	ACCGGT	1 cut(s)	610
BshVI	ATCGAT	1 cut(s)	486
BsiEI	CGRYCG	1 cut(s)	486
BsiSI	CCGG	5 cut(s)	72, 430, 437, 611, 763
BslFI	GGGAC	2 cut(s)	418, 727
BslI	CCNNNNNNNGG	3 cut(s)	436, 443, 667
BsmAI	GTCTC	1 cut(s)	434
BsmFI	GGGAC	2 cut(s)	418, 727
BsnI	GGCC	3 cut(s)	52, 170, 815
Bsp13I	TCCGGA	1 cut(s)	436
Bsp143I	GATC	2 cut(s)	483, 742
BspACI	CCGC	6 cut(s)	41, 191, 194, 501, 547, 812
BspANI	GGCC	3 cut(s)	52, 170, 815
BspCNI	CTCAG	2 cut(s)	202, 583
BspDI	ATCGAT	1 cut(s)	486
BspEI	TCCGGA	1 cut(s)	436
BspLI	GGNNCC	1 cut(s)	695
BspMAI	CTGCAG	1 cut(s)	799
BsrDI	GCAATG	1 cut(s)	504
BsrFI	RCCGGY	1 cut(s)	610
BsrI	ACTGG	2 cut(s)	80, 448
BssAI	RCCGGY	1 cut(s)	610
BssECI	CCNNGG	2 cut(s)	70, 575
BssMI	GATC	2 cut(s)	483, 742
Bst4CI	ACNGT	3 cut(s)	330, 409, 718
Bst6I	CTCTTC	2 cut(s)	243, 793
BstBAI	YACGTR	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	2 cut(s)	210, 591
BstEII	GGTNACC	1 cut(s)	656
BstF5I	GGATG	2 cut(s)	523, 829
BstKTI	GATC	2 cut(s)	486, 745
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	2 cut(s)	483, 742
BstMCI	CGRYCG	1 cut(s)	486
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 49, 500, 506, 509, 702
BstNSI	RCATGY	1 cut(s)	191
BstPI	GGTNACC	1 cut(s)	656
BstSCI	CCNGG	2 cut(s)	70, 762
BstSFI	CTRYAG	1 cut(s)	795
BstV1I	GCAGC	4 cut(s)	23, 331, 496, 781
Bsu15I	ATCGAT	1 cut(s)	486
BsuRI	GGCC	3 cut(s)	52, 170, 815
BsuTUI	ATCGAT	1 cut(s)	486
BtsCI	GGATG	2 cut(s)	523, 829
BtsIMutI	CAGTG	1 cut(s)	86
Cac8I	GCNNGC	1 cut(s)	67
CaiI	CAGNNNCTG	1 cut(s)	459
Cfr10I	RCCGGY	1 cut(s)	610
ClaI	ATCGAT	1 cut(s)	486
Csp6I	GTAC	2 cut(s)	340, 628
CspAI	ACCGGT	1 cut(s)	610
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CviAII	CATG	3 cut(s)	188, 683, 740
CviQI	GTAC	2 cut(s)	340, 628
DdeI	CTNAG	2 cut(s)	210, 591
DpnI	GATC	2 cut(s)	485, 744
DpnII	GATC	2 cut(s)	483, 742
EaeI	YGGCCR	1 cut(s)	168
Eam1104I	CTCTTC	2 cut(s)	243, 793
EarI	CTCTTC	2 cut(s)	243, 793
EciI	GGCGGA	1 cut(s)	30
Eco91I	GGTNACC	1 cut(s)	656
EcoO65I	GGTNACC	1 cut(s)	656
EcoRI	GAATTC	1 cut(s)	601
FaeI	CATG	3 cut(s)	191, 686, 743
FaqI	GGGAC	2 cut(s)	418, 727
FatI	CATG	3 cut(s)	187, 682, 739
FauI	CCCGC	1 cut(s)	540
FauNDI	CATATG	1 cut(s)	567
Fnu4HI	GCNGC	7 cut(s)	12, 192, 320, 501, 510, 795, 813
FokI	GGATG	2 cut(s)	530, 836
Fsp4HI	GCNGC	7 cut(s)	12, 192, 320, 501, 510, 795, 813
FspBI	CTAG	3 cut(s)	582, 723, 729
GluI	GCNGC	7 cut(s)	12, 192, 320, 501, 510, 795, 813
HaeIII	GGCC	3 cut(s)	52, 170, 815
HapII	CCGG	5 cut(s)	72, 430, 437, 611, 763
Hin1II	CATG	3 cut(s)	191, 686, 743
HinfI	GANTC	7 cut(s)	75, 96, 153, 313, 433, 488, 571
HpaII	CCGG	5 cut(s)	72, 430, 437, 611, 763
HphI	GGTGA	2 cut(s)	208, 625
Hpy166II	GTNNAC	1 cut(s)	628
Hpy188I	TCNGA	4 cut(s)	357, 367, 576, 592
Hpy188III	TCNNGA	2 cut(s)	157, 437
Hpy8I	GTNNAC	1 cut(s)	628
Hpy99I	CGWCG	3 cut(s)	275, 278, 422
HpyCH4III	ACNGT	3 cut(s)	330, 409, 718
HpyCH4IV	ACGT	2 cut(s)	276, 342
HpyCH4V	TGCA	6 cut(s)	86, 348, 494, 512, 739, 797
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 49, 500, 506, 509, 702
HpyF3I	CTNAG	2 cut(s)	210, 591
HpySE526I	ACGT	2 cut(s)	276, 342
Hsp92II	CATG	3 cut(s)	191, 686, 743
Kpn2I	TCCGGA	1 cut(s)	436
Kzo9I	GATC	2 cut(s)	483, 742
LmnI	GCTCC	1 cut(s)	693
Lsp1109I	GCAGC	4 cut(s)	23, 331, 496, 781
LweI	GCATC	1 cut(s)	534
MaeI	CTAG	3 cut(s)	582, 723, 729
MaeII	ACGT	2 cut(s)	276, 342
MaeIII	GTNAC	2 cut(s)	469, 656
MalI	GATC	2 cut(s)	485, 744
MboI	GATC	2 cut(s)	483, 742
MboII	GAAGA	9 cut(s)	148, 191, 194, 230, 260, 344, 628, 769, 780
MluCI	AATT	1 cut(s)	601
MlyI	GAGTC	4 cut(s)	69, 162, 442, 580
MroI	TCCGGA	1 cut(s)	436
MroXI	GAANNNNTTC	1 cut(s)	95
MseI	TTAA	3 cut(s)	449, 867, 880
MspI	CCGG	5 cut(s)	72, 430, 437, 611, 763
MspR9I	CCNGG	2 cut(s)	72, 764
MwoI	GCNNNNNNNGC	6 cut(s)	11, 49, 500, 506, 509, 702
NciI	CCSGG	2 cut(s)	72, 764
NdeI	CATATG	1 cut(s)	567
NdeII	GATC	2 cut(s)	483, 742
NlaIII	CATG	3 cut(s)	191, 686, 743
NlaIV	GGNNCC	1 cut(s)	695
NspI	RCATGY	1 cut(s)	191
PdmI	GAANNNNTTC	1 cut(s)	95
PfeI	GAWTC	3 cut(s)	96, 313, 488
PinAI	ACCGGT	1 cut(s)	610
PkrI	GCNGC	7 cut(s)	13, 193, 321, 502, 511, 796, 814
Ple19I	CGATCG	1 cut(s)	486
PleI	GAGTC	4 cut(s)	69, 161, 441, 579
PpsI	GAGTC	4 cut(s)	69, 161, 441, 579
Ppu21I	YACGTR	1 cut(s)	343
PsiI	TTATAA	1 cut(s)	642
PspEI	GGTNACC	1 cut(s)	656
PspN4I	GGNNCC	1 cut(s)	695
PsrI	GAACNNNNNNTAC	2 cut(s)	611, 643
PstI	CTGCAG	1 cut(s)	799
PstNI	CAGNNNCTG	1 cut(s)	459
PvuI	CGATCG	1 cut(s)	486
RsaI	GTAC	2 cut(s)	341, 629
RsaNI	GTAC	2 cut(s)	340, 628
SaqAI	TTAA	3 cut(s)	449, 867, 880
SatI	GCNGC	7 cut(s)	12, 192, 320, 501, 510, 795, 813
Sau3AI	GATC	2 cut(s)	483, 742
SchI	GAGTC	4 cut(s)	69, 162, 442, 580
ScrFI	CCNGG	2 cut(s)	72, 764
SetI	ASST	8 cut(s)	151, 279, 339, 345, 365, 426, 648, 663
SfaNI	GCATC	1 cut(s)	534
SfcI	CTRYAG	1 cut(s)	795
SgrAI	CRCCGGYG	1 cut(s)	610
Sse9I	AATT	1 cut(s)	601
SsiI	CCGC	6 cut(s)	41, 191, 194, 501, 547, 812
SspMI	CTAG	3 cut(s)	582, 723, 729
StyD4I	CCNGG	2 cut(s)	70, 762
TaaI	ACNGT	3 cut(s)	330, 409, 718
TaiI	ACGT	2 cut(s)	279, 345
TaqI	TCGA	5 cut(s)	420, 482, 486, 605, 745
TasI	AATT	1 cut(s)	601
TauI	GCSGC	3 cut(s)	194, 503, 815
TfiI	GAWTC	3 cut(s)	96, 313, 488
Tru1I	TTAA	3 cut(s)	449, 867, 880
Tru9I	TTAA	3 cut(s)	449, 867, 880
TscAI	CASTG	1 cut(s)	93
TseI	GCWGC	4 cut(s)	11, 319, 509, 794
TspDTI	ATGAA	2 cut(s)	261, 554
TspGWI	ACGGA	3 cut(s)	100, 406, 845
TspRI	CASTG	1 cut(s)	93
XapI	RAATTY	1 cut(s)	601
XceI	RCATGY	1 cut(s)	191
XcmI	CCANNNNNNNNNTGG	1 cut(s)	511
XmnI	GAANNNNTTC	1 cut(s)	95
XspI	CTAG	3 cut(s)	582, 723, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.