Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8199314.1

Orthogroup ID

OG0011085

Physical Location & Seq

Genomic Coordinates Forward (+)

45 .. 472

Gene Structure 428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8199314.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atgcgggttaggttttcggttcatatgagtccgaggactaggaactccgaggcattgaattcggcaccggtgaagaacttggtgtacgaaagcccttataagctctatgttggtaacctggcctgggctgtccagcctcatgctttgaggagccatttcagcaagtttgggactctggctagtgcaagagtgttgcatgatcgaaaagctgggaagaaccgggcttatgggtttatctcattctcttcggctgcagagcgtgataaagcggccactttggatggaacggagtttttcggtcggaggataatagttagaggacttaaagaaagggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

112

Amino Acids

12.61

Weight (kDa)

10.96

Isoelectric Point (pI)

31.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01080 AT1G01080 AT1G01080
fragaria_vesca	FvH4_7g17690
malus_domestica	MD07G1160000.v1.1
pyrus_communis	pycom07g15630
rosa_chinensis	RchiOBHm_Chr1g0361121
rosa_laevigata	RLG00000027747
rosa_multiflora	Rmu_co8199314.1_g000001 Rmu_co8203846.1_g000001 Rmu_sc0002863.1_g000038 Rmu_sc0020096.1_g000002
rosa_roxburghii	Rroxscaffold_4G00295420
rosa_rugosa	Rorug01G0285700
rosa_samantha	Rh1AG297200 Rh1BG261500 Rh1CG278600 Rh1DG291300
rosa_wichuraiana	Rw1G026250 Rw1G026930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	99
AccB1I	GGYRCC	1 cut(s)	64
AciI	CCGC	2 cut(s)	4, 269
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	1 cut(s)	58
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgeI	ACCGGT	1 cut(s)	67
AgsI	TTSAA	1 cut(s)	58
AjnI	CCWGG	2 cut(s)	117, 122
AluBI	AGCT	2 cut(s)	103, 209
AluI	AGCT	2 cut(s)	103, 209
AoxI	GGCC	2 cut(s)	120, 270
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	1 cut(s)	58
AsiGI	ACCGGT	1 cut(s)	67
AsuC2I	CCSGG	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	1 cut(s)	275
BcgI	CGANNNNNNTGC	2 cut(s)	42, 76
BciT130I	CCWGG	2 cut(s)	119, 124
BcnI	CCSGG	1 cut(s)	221
BfaI	CTAG	2 cut(s)	39, 180
BfmI	CTRYAG	1 cut(s)	252
BisI	GCNGC	2 cut(s)	252, 270
BlsI	GCNGC	2 cut(s)	253, 271
Bme1390I	CCNGG	3 cut(s)	119, 124, 221
BmiI	GGNNCC	2 cut(s)	66, 152
BmrFI	CCNGG	3 cut(s)	119, 124, 221
BpuMI	CCSGG	1 cut(s)	221
BsaJI	CCNNGG	3 cut(s)	32, 48, 123
BsaWI	WCCGGW	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse118I	RCCGGY	1 cut(s)	67
BseBI	CCWGG	2 cut(s)	119, 124
BseDI	CCNNGG	3 cut(s)	32, 48, 123
BseGI	GGATG	1 cut(s)	286
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseRI	GAGGAG	1 cut(s)	163
BseXI	GCAGC	1 cut(s)	238
BseYI	CCCAGC	1 cut(s)	209
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	2 cut(s)	122, 272
BshNI	GGYRCC	1 cut(s)	64
BshTI	ACCGGT	1 cut(s)	67
BsiEI	CGRYCG	1 cut(s)	301
BsiSI	CCGG	2 cut(s)	68, 220
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	2 cut(s)	122, 272
Bsp143I	GATC	1 cut(s)	199
BspACI	CCGC	2 cut(s)	4, 269
BspANI	GGCC	2 cut(s)	122, 272
BspLI	GGNNCC	2 cut(s)	66, 152
BspMAI	CTGCAG	1 cut(s)	256
BspT107I	GGYRCC	1 cut(s)	64
BsrFI	RCCGGY	1 cut(s)	67
BssAI	RCCGGY	1 cut(s)	67
BssECI	CCNNGG	3 cut(s)	32, 48, 123
BssMI	GATC	1 cut(s)	199
Bst2UI	CCWGG	2 cut(s)	119, 124
Bst6I	CTCTTC	1 cut(s)	250
BstDEI	CTNAG	1 cut(s)	336
BstEII	GGTNACC	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	286
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstMCI	CGRYCG	1 cut(s)	301
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstNI	CCWGG	2 cut(s)	119, 124
BstPI	GGTNACC	1 cut(s)	113
BstSCI	CCNGG	3 cut(s)	117, 122, 219
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	1 cut(s)	238
BsuRI	GGCC	2 cut(s)	122, 272
BtsCI	GGATG	1 cut(s)	286
Cfr10I	RCCGGY	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	85
CspAI	ACCGGT	1 cut(s)	67
CviAII	CATG	2 cut(s)	140, 197
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
EaeI	YGGCCR	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
Eco91I	GGTNACC	1 cut(s)	113
EcoO65I	GGTNACC	1 cut(s)	113
EcoRI	GAATTC	1 cut(s)	58
EcoRII	CCWGG	2 cut(s)	117, 122
FaeI	CATG	2 cut(s)	143, 200
FaiI	YATR	7 cut(s)	24, 26, 99, 108, 141, 198, 228
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	2 cut(s)	139, 196
FauNDI	CATATG	1 cut(s)	24
Fnu4HI	GCNGC	2 cut(s)	252, 270
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	2 cut(s)	252, 270
FspBI	CTAG	2 cut(s)	39, 180
GluI	GCNGC	2 cut(s)	252, 270
GsaI	CCCAGC	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	122, 272
HapII	CCGG	2 cut(s)	68, 220
Hin1II	CATG	2 cut(s)	143, 200
HinfI	GANTC	2 cut(s)	28, 172
HpaII	CCGG	2 cut(s)	68, 220
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	3 cut(s)	33, 49, 303
Hpy8I	GTNNAC	1 cut(s)	85
HpyCH4V	TGCA	3 cut(s)	185, 196, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpyF3I	CTNAG	1 cut(s)	336
Hsp92II	CATG	2 cut(s)	143, 200
Kzo9I	GATC	1 cut(s)	199
LmnI	GCTCC	1 cut(s)	150
LpnPI	CCDG	9 cut(s)	81, 104, 109, 131, 136, 146, 161, 195, 233
Lsp1109I	GCAGC	1 cut(s)	238
MaeI	CTAG	2 cut(s)	39, 180
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	3 cut(s)	85, 226, 237
MluCI	AATT	1 cut(s)	58
MlyI	GAGTC	2 cut(s)	37, 166
MmeI	TCCRAC	1 cut(s)	281
MnlI	CCTC	6 cut(s)	27, 43, 141, 147, 297, 311
MseI	TTAA	1 cut(s)	324
MspI	CCGG	2 cut(s)	68, 220
MspR9I	CCNGG	3 cut(s)	119, 124, 221
MvaI	CCWGG	2 cut(s)	119, 124
MwoI	GCNNNNNNNGC	1 cut(s)	159
NciI	CCSGG	1 cut(s)	221
NdeI	CATATG	1 cut(s)	24
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	2 cut(s)	143, 200
NlaIV	GGNNCC	2 cut(s)	66, 152
PinAI	ACCGGT	1 cut(s)	67
PkrI	GCNGC	2 cut(s)	253, 271
PleI	GAGTC	2 cut(s)	36, 166
PpsI	GAGTC	2 cut(s)	36, 166
PsiI	TTATAA	1 cut(s)	99
Psp6I	CCWGG	2 cut(s)	117, 122
PspEI	GGTNACC	1 cut(s)	113
PspFI	CCCAGC	1 cut(s)	209
PspGI	CCWGG	2 cut(s)	117, 122
PspN4I	GGNNCC	2 cut(s)	66, 152
PsrI	GAACNNNNNNTAC	2 cut(s)	68, 100
PstI	CTGCAG	1 cut(s)	256
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	2 cut(s)	252, 270
Sau3AI	GATC	1 cut(s)	199
SchI	GAGTC	2 cut(s)	37, 166
ScrFI	CCNGG	3 cut(s)	119, 124, 221
SetI	ASST	4 cut(s)	14, 105, 120, 211
SfcI	CTRYAG	1 cut(s)	252
SgrAI	CRCCGGYG	1 cut(s)	67
Sse9I	AATT	1 cut(s)	58
SsiI	CCGC	2 cut(s)	4, 269
SspMI	CTAG	2 cut(s)	39, 180
StyD4I	CCNGG	3 cut(s)	117, 122, 219
TaqI	TCGA	1 cut(s)	202
TaqII	GACCGA	1 cut(s)	287
TasI	AATT	1 cut(s)	58
TauI	GCSGC	1 cut(s)	272
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TseI	GCWGC	1 cut(s)	251
TspDTI	ATGAA	1 cut(s)	11
TspGWI	ACGGA	1 cut(s)	302
XapI	RAATTY	1 cut(s)	58
XspI	CTAG	2 cut(s)	39, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.