Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0011085

Physical Location & Seq

Genomic Coordinates Reverse (-)

54274132 .. 54275229

Gene Structure 1098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G026930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCAGCCACATGCTTAAACATAACACCCTCTCCTCCCTCTTGGATTACTAACAACACCAGCCCGAACACCGGAGTCATAGTTTCACTTAAACGATTGGTTTTCAGTTCCGTTCCATTTTCTTCCTTGCATCGCCGGCTCAGGTACTCGAAGAACAGAGCCGGGGTTTTGACGGCGTTGTCCGTAGTGGAACAGGAACAGGCGGTGAGTTCAGTGGCTGAGGAAGAAGAACAAGGTGTGGACGATAATGGGTATGAAGAGCAGTATGAGTACGAGAGACACAACGCCGATGTTTCAGGCGAGGGATTGGAAATGGAGAAGCAGAATCGGCAGCCAAGACCGTGTGAGTTGTACGTGTGCAATCTTCCCAGAAGCTCTGACATTGAGGACTTGATGGAGATGTTTAAGCCACACGGGACTACCGGTTTAAGCAGAGGCTGTGGTTACATTACAATGGGCTCTATAGACTCTGCTAAAGCCGCCATTGCTGCATTGGATGGGATTGATGTTGCAGGGAGGGAGATGCGGGTTAGGTTTTCGGTTCATATGAGTCCGAGGACTAGGAACTCCGAGGCATTGAATTCGGCACCAGTGAAGAACTTGGTGTACGAAAGCCCTTATAAGCTCTATGTTGGTAACCTGGCCTGGGCTGTCCAGCCTCATGCTTTGAGGAGCCATTTCAGCAAGTTTGGGACTCTGGCTAGTGCAAGAGTGTTGCATGATCGAAAAGCTGGGAAGAACCGGGCTTATGGGTTTATCTCATTCTCTTCGGCTGCAGAGCGTGATAAAGCGGCCACTTTGGATGGAACGGAGTTTTTCGGTCGGAGGATAATAGTTAGAGGACTTAAAGAAAGGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

286

Amino Acids

31.65

Weight (kDa)

8.61

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	117 - 176	1.3e-06	RNA recognition motif
RRM_1	PF00076	209 - 277	3.2e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01080 AT1G01080 AT1G01080
fragaria_vesca	FvH4_7g17690
malus_domestica	MD07G1160000.v1.1
pyrus_communis	pycom07g15630
rosa_chinensis	RchiOBHm_Chr1g0361121
rosa_laevigata	RLG00000027747
rosa_multiflora	Rmu_co8199314.1_g000001 Rmu_co8203846.1_g000001 Rmu_sc0002863.1_g000038 Rmu_sc0020096.1_g000002
rosa_roxburghii	Rroxscaffold_4G00295420
rosa_rugosa	Rorug01G0285700
rosa_samantha	Rh1AG297200 Rh1BG261500 Rh1CG278600 Rh1DG291300
rosa_wichuraiana	Rw1G026250 Rw1G026930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	621
AasI	GACNNNNNNGTC	1 cut(s)	178
AccB1I	GGYRCC	1 cut(s)	586
AciI	CCGC	4 cut(s)	203, 480, 526, 791
AcoI	YGGCCR	1 cut(s)	792
AcsI	RAATTY	1 cut(s)	580
AfaI	GTAC	4 cut(s)	146, 272, 353, 608
AfiI	CCNNNNNNNGG	2 cut(s)	71, 646
AflIII	ACRYGT	1 cut(s)	354
AgeI	ACCGGT	1 cut(s)	422
AgsI	TTSAA	1 cut(s)	580
AjnI	CCWGG	2 cut(s)	639, 644
AluBI	AGCT	3 cut(s)	375, 625, 731
AluI	AGCT	3 cut(s)	375, 625, 731
Alw26I	GTCTC	1 cut(s)	271
AlwNI	CAGNNNCTG	2 cut(s)	218, 438
AoxI	GGCC	2 cut(s)	642, 792
ApeKI	GCWGC	4 cut(s)	5, 331, 488, 773
ApoI	RAATTY	1 cut(s)	580
AsiGI	ACCGGT	1 cut(s)	422
AsuC2I	CCSGG	2 cut(s)	163, 743
AsuHPI	GGTGA	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	586
BanII	GRGCYC	1 cut(s)	461
BbvCI	CCTCAGC	1 cut(s)	219
BbvI	GCAGC	4 cut(s)	17, 343, 475, 760
BccI	CCATC	3 cut(s)	388, 491, 797
BceAI	ACGGC	1 cut(s)	189
BcgI	CGANNNNNNTGC	2 cut(s)	564, 598
BciT130I	CCWGG	2 cut(s)	641, 646
BcnI	CCSGG	2 cut(s)	163, 743
BcoDI	GTCTC	1 cut(s)	271
BfaI	CTAG	2 cut(s)	561, 702
BfmI	CTRYAG	2 cut(s)	462, 774
BisI	GCNGC	6 cut(s)	6, 332, 480, 489, 774, 792
BlsI	GCNGC	6 cut(s)	7, 333, 481, 490, 775, 793
Bme1390I	CCNGG	4 cut(s)	163, 641, 646, 743
BmiI	GGNNCC	2 cut(s)	588, 674
BmrFI	CCNGG	4 cut(s)	163, 641, 646, 743
BmsI	GCATC	2 cut(s)	139, 513
Bpu10I	CCTNAGC	2 cut(s)	140, 219
BpuMI	CCSGG	2 cut(s)	163, 743
BsaAI	YACGTR	1 cut(s)	355
BsaJI	CCNNGG	4 cut(s)	162, 554, 570, 645
BsaWI	WCCGGW	2 cut(s)	71, 422
BsaXI	ACNNNNNCTCC	4 cut(s)	16, 46, 66, 96
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 646
Bse118I	RCCGGY	2 cut(s)	135, 422
Bse1I	ACTGG	1 cut(s)	590
Bse3DI	GCAATG	1 cut(s)	483
BseBI	CCWGG	2 cut(s)	641, 646
BseDI	CCNNGG	4 cut(s)	162, 554, 570, 645
BseGI	GGATG	2 cut(s)	502, 808
BseLI	CCNNNNNNNGG	2 cut(s)	71, 646
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	2 cut(s)	154, 210
BseNI	ACTGG	1 cut(s)	590
BseRI	GAGGAG	2 cut(s)	24, 685
BseXI	GCAGC	4 cut(s)	17, 343, 475, 760
BseYI	CCCAGC	1 cut(s)	731
Bsh1285I	CGRYCG	1 cut(s)	823
BshFI	GGCC	2 cut(s)	644, 794
BshNI	GGYRCC	1 cut(s)	586
BshTI	ACCGGT	1 cut(s)	422
BsiEI	CGRYCG	1 cut(s)	823
BsiSI	CCGG	5 cut(s)	72, 136, 162, 423, 742
BslFI	GGGAC	2 cut(s)	430, 706
BslI	CCNNNNNNNGG	2 cut(s)	71, 646
BsmAI	GTCTC	1 cut(s)	271
BsmFI	GGGAC	2 cut(s)	430, 706
BsnI	GGCC	2 cut(s)	644, 794
Bsp1286I	GDGCHC	1 cut(s)	461
Bsp143I	GATC	1 cut(s)	721
BspACI	CCGC	4 cut(s)	203, 480, 526, 791
BspANI	GGCC	2 cut(s)	644, 794
BspCNI	CTCAG	2 cut(s)	153, 211
BspLI	GGNNCC	2 cut(s)	588, 674
BspMAI	CTGCAG	1 cut(s)	778
BspQI	GCTCTTC	1 cut(s)	252
BspT107I	GGYRCC	1 cut(s)	586
BsrDI	GCAATG	1 cut(s)	483
BsrFI	RCCGGY	2 cut(s)	135, 422
BsrI	ACTGG	1 cut(s)	590
BssAI	RCCGGY	2 cut(s)	135, 422
BssECI	CCNNGG	4 cut(s)	162, 554, 570, 645
BssMI	GATC	1 cut(s)	721
Bst2UI	CCWGG	2 cut(s)	641, 646
Bst4CI	ACNGT	1 cut(s)	342
Bst6I	CTCTTC	2 cut(s)	252, 772
BstBAI	YACGTR	1 cut(s)	355
BstC8I	GCNNGC	1 cut(s)	137
BstDEI	CTNAG	3 cut(s)	140, 219, 858
BstEII	GGTNACC	1 cut(s)	635
BstF5I	GGATG	2 cut(s)	502, 808
BstKTI	GATC	1 cut(s)	724
BstMAI	GTCTC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	721
BstMCI	CGRYCG	1 cut(s)	823
BstMWI	GCNNNNNNNGC	6 cut(s)	136, 328, 479, 485, 488, 681
BstNI	CCWGG	2 cut(s)	641, 646
BstNSI	RCATGY	1 cut(s)	15
BstPI	GGTNACC	1 cut(s)	635
BstSCI	CCNGG	4 cut(s)	161, 639, 644, 741
BstSFI	CTRYAG	2 cut(s)	462, 774
BstV1I	GCAGC	4 cut(s)	17, 343, 475, 760
BsuRI	GGCC	2 cut(s)	644, 794
BtgZI	GCGATG	1 cut(s)	116
BtsCI	GGATG	2 cut(s)	502, 808
BtsIMutI	CAGTG	2 cut(s)	219, 597
Cac8I	GCNNGC	1 cut(s)	137
CaiI	CAGNNNCTG	2 cut(s)	218, 438
Cfr10I	RCCGGY	2 cut(s)	135, 422
Csp6I	GTAC	4 cut(s)	145, 271, 352, 607
CspAI	ACCGGT	1 cut(s)	422
CviAII	CATG	3 cut(s)	12, 662, 719
CviQI	GTAC	4 cut(s)	145, 271, 352, 607
DdeI	CTNAG	3 cut(s)	140, 219, 858
DpnI	GATC	1 cut(s)	723
DpnII	GATC	1 cut(s)	721
DrdI	GACNNNNNNGTC	1 cut(s)	178
DseDI	GACNNNNNNGTC	1 cut(s)	178
EaeI	YGGCCR	1 cut(s)	792
Eam1104I	CTCTTC	2 cut(s)	252, 772
EarI	CTCTTC	2 cut(s)	252, 772
Eco24I	GRGCYC	1 cut(s)	461
Eco91I	GGTNACC	1 cut(s)	635
EcoO65I	GGTNACC	1 cut(s)	635
EcoRI	GAATTC	1 cut(s)	580
EcoRII	CCWGG	2 cut(s)	639, 644
EcoT38I	GRGCYC	1 cut(s)	461
FaeI	CATG	3 cut(s)	15, 665, 722
FaqI	GGGAC	2 cut(s)	430, 706
FatI	CATG	3 cut(s)	11, 661, 718
FauI	CCCGC	1 cut(s)	519
FauNDI	CATATG	1 cut(s)	546
Fnu4HI	GCNGC	6 cut(s)	6, 332, 480, 489, 774, 792
FokI	GGATG	2 cut(s)	509, 815
FriOI	GRGCYC	1 cut(s)	461
Fsp4HI	GCNGC	6 cut(s)	6, 332, 480, 489, 774, 792
FspBI	CTAG	2 cut(s)	561, 702
GluI	GCNGC	6 cut(s)	6, 332, 480, 489, 774, 792
GsaI	CCCAGC	1 cut(s)	735
HaeIII	GGCC	2 cut(s)	644, 794
HapII	CCGG	5 cut(s)	72, 136, 162, 423, 742
Hin1II	CATG	3 cut(s)	15, 665, 722
HinfI	GANTC	5 cut(s)	75, 325, 467, 550, 694
HpaII	CCGG	5 cut(s)	72, 136, 162, 423, 742
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	2 cut(s)	241, 607
Hpy188I	TCNGA	4 cut(s)	379, 555, 571, 825
Hpy8I	GTNNAC	2 cut(s)	241, 607
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	7 cut(s)	130, 360, 491, 512, 707, 718, 776
HpyF10VI	GCNNNNNNNGC	6 cut(s)	136, 328, 479, 485, 488, 681
HpyF3I	CTNAG	3 cut(s)	140, 219, 858
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	3 cut(s)	15, 665, 722
KroI	GCCGGC	1 cut(s)	135
KroNI	GCCGGC	1 cut(s)	137
Kzo9I	GATC	1 cut(s)	721
LguI	GCTCTTC	1 cut(s)	252
LmnI	GCTCC	1 cut(s)	672
Lsp1109I	GCAGC	4 cut(s)	17, 343, 475, 760
LweI	GCATC	2 cut(s)	139, 513
MaeI	CTAG	2 cut(s)	561, 702
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	2 cut(s)	443, 635
MalI	GATC	1 cut(s)	723
MboI	GATC	1 cut(s)	721
MboII	GAAGA	9 cut(s)	114, 163, 236, 239, 269, 356, 607, 748, 759
MhlI	GDGCHC	1 cut(s)	461
MluCI	AATT	1 cut(s)	580
MlyI	GAGTC	4 cut(s)	84, 461, 559, 688
MmeI	TCCRAC	1 cut(s)	803
MroNI	GCCGGC	1 cut(s)	135
MseI	TTAA	5 cut(s)	17, 90, 405, 428, 846
MslI	CAYNNNNRTG	1 cut(s)	452
MspI	CCGG	5 cut(s)	72, 136, 162, 423, 742
MspR9I	CCNGG	4 cut(s)	163, 641, 646, 743
MvaI	CCWGG	2 cut(s)	641, 646
MwoI	GCNNNNNNNGC	6 cut(s)	136, 328, 479, 485, 488, 681
NaeI	GCCGGC	1 cut(s)	137
NciI	CCSGG	2 cut(s)	163, 743
NdeI	CATATG	1 cut(s)	546
NdeII	GATC	1 cut(s)	721
NgoMIV	GCCGGC	1 cut(s)	135
NlaIII	CATG	3 cut(s)	15, 665, 722
NlaIV	GGNNCC	2 cut(s)	588, 674
NspI	RCATGY	1 cut(s)	15
PciSI	GCTCTTC	1 cut(s)	252
PdiI	GCCGGC	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	325
PinAI	ACCGGT	1 cut(s)	422
PkrI	GCNGC	6 cut(s)	7, 333, 481, 490, 775, 793
PleI	GAGTC	4 cut(s)	83, 461, 558, 688
PpsI	GAGTC	4 cut(s)	83, 461, 558, 688
Ppu21I	YACGTR	1 cut(s)	355
PsiI	TTATAA	1 cut(s)	621
Psp6I	CCWGG	2 cut(s)	639, 644
PspEI	GGTNACC	1 cut(s)	635
PspFI	CCCAGC	1 cut(s)	731
PspGI	CCWGG	2 cut(s)	639, 644
PspN4I	GGNNCC	2 cut(s)	588, 674
PsrI	GAACNNNNNNTAC	2 cut(s)	590, 622
PstI	CTGCAG	1 cut(s)	778
PstNI	CAGNNNCTG	2 cut(s)	218, 438
RsaI	GTAC	4 cut(s)	146, 272, 353, 608
RsaNI	GTAC	4 cut(s)	145, 271, 352, 607
RseI	CAYNNNNRTG	1 cut(s)	452
SapI	GCTCTTC	1 cut(s)	252
SaqAI	TTAA	5 cut(s)	17, 90, 405, 428, 846
SatI	GCNGC	6 cut(s)	6, 332, 480, 489, 774, 792
Sau3AI	GATC	1 cut(s)	721
SchI	GAGTC	4 cut(s)	84, 461, 559, 688
ScrFI	CCNGG	4 cut(s)	163, 641, 646, 743
SduI	GDGCHC	1 cut(s)	461
SetI	ASST	8 cut(s)	146, 238, 357, 377, 536, 627, 642, 733
SfaNI	GCATC	2 cut(s)	139, 513
SfcI	CTRYAG	2 cut(s)	462, 774
SmiMI	CAYNNNNRTG	1 cut(s)	452
Sse9I	AATT	1 cut(s)	580
SsiI	CCGC	4 cut(s)	203, 480, 526, 791
SspMI	CTAG	2 cut(s)	561, 702
StyD4I	CCNGG	4 cut(s)	161, 639, 644, 741
TaaI	ACNGT	1 cut(s)	342
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	2 cut(s)	149, 724
TaqII	GACCGA	1 cut(s)	809
TasI	AATT	1 cut(s)	580
TauI	GCSGC	2 cut(s)	482, 794
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	5 cut(s)	17, 90, 405, 428, 846
Tru9I	TTAA	5 cut(s)	17, 90, 405, 428, 846
TscAI	CASTG	2 cut(s)	219, 597
TseI	GCWGC	4 cut(s)	5, 331, 488, 773
TspDTI	ATGAA	2 cut(s)	270, 533
TspGWI	ACGGA	3 cut(s)	100, 172, 824
TspRI	CASTG	2 cut(s)	219, 597
XapI	RAATTY	1 cut(s)	580
XceI	RCATGY	1 cut(s)	15
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XspI	CTAG	2 cut(s)	561, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.