Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0011085

Physical Location & Seq

Genomic Coordinates Reverse (-)

14773008 .. 14774109

Gene Structure 1102 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027747

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCAGCCACATGCTTAAACACAACACCCTCTCCTCCCTCTTGGATTACTAACAACACCAGCCCGAACACCGGAGTCACAATTTCACTTAAACGATTCGTTTTCAGTTCCTTTCCATTTTCTTCCTTGCATCACCAGCTCAGGTACTCGAAGAACAGAGCCGGGGTTTTGACGGCGTTGGCCGTAGTGGAACAGGAACAGGCGGTGAGTTTAGTGGCTGAGGAAGAAGAACAAGGTGTGGACGATAATGGGTACGAAGAGCAGTATGAGCACGAGAGACACAGCGCCGATGTTTCAGGCGAGGAGGGATTGGATATGGAGAAGCAGAATCGGCAGCCAAGACCGTGTGAGTTGTACGTGTGCAATCTTCCCAGAAGCTCTGACATTGAGGACTTGATGGAGATGTTTAAGCCACACGGCACTGTTTTCTCCGTCGAGATTTCCCGGAGTCCAGAGACCGGTTTAAGTAGAGGCTGTGGTTACATTACAATGGGTTCTATAGACTCTGCTAAAGCCGCCATTGCTGCATTGGATGGGATTGATGTTGAAGGGAGGGAGATGCGGGTTAGGTTTTCGGTTCACATGAGTCCGAGGACTAGGAACTCCGAGGCATTGAATTCGGCACCGGTGAAGAACTTGGTGTACGAAAGCCCTTATAAGCTCTATGTTGGTAACCTTGCTTGGGCTGTCCAGCCTCATGCTTTGAGGAGCCATTTCAGCAAGTTTGGGACTGTGGCTAGTGCAAGAGTGTTGCATGATCGTAAAGCTGGGAAGAACCGGGCTTATGGGTTTATCTCATTCTCTTCGGCGGCAGAGCGTGATAAAGCTGCCACTTTGGATGGAACGGAGTTTTTTGGTCGGAGGATAATAGTTAGAGGACTTAAAGAAAGGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

299

Amino Acids

33.02

Weight (kDa)

6.52

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	118 - 188	4.8e-14	RNA recognition motif
RRM_1	PF00076	221 - 289	6.8e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01080 AT1G01080 AT1G01080
fragaria_vesca	FvH4_7g17690
malus_domestica	MD07G1160000.v1.1
pyrus_communis	pycom07g15630
rosa_chinensis	RchiOBHm_Chr1g0361121
rosa_laevigata	RLG00000027747
rosa_multiflora	Rmu_co8199314.1_g000001 Rmu_co8203846.1_g000001 Rmu_sc0002863.1_g000038 Rmu_sc0020096.1_g000002
rosa_roxburghii	Rroxscaffold_4G00295420
rosa_rugosa	Rorug01G0285700
rosa_samantha	Rh1AG297200 Rh1BG261500 Rh1CG278600 Rh1DG291300
rosa_wichuraiana	Rw1G026250 Rw1G026930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	657
AccB1I	GGYRCC	1 cut(s)	622
AciI	CCGC	4 cut(s)	203, 516, 562, 809
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	616
AfaI	GTAC	4 cut(s)	146, 254, 356, 644
AfiI	CCNNNNNNNGG	3 cut(s)	71, 458, 682
AflIII	ACRYGT	1 cut(s)	357
AgeI	ACCGGT	2 cut(s)	458, 625
AgsI	TTSAA	2 cut(s)	548, 616
AluBI	AGCT	5 cut(s)	139, 378, 661, 767, 827
AluI	AGCT	5 cut(s)	139, 378, 661, 767, 827
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	2 cut(s)	271, 449
AoxI	GGCC	1 cut(s)	180
ApeKI	GCWGC	4 cut(s)	5, 334, 524, 827
ApoI	RAATTY	1 cut(s)	616
AsiGI	ACCGGT	2 cut(s)	458, 625
AspLEI	GCGC	1 cut(s)	287
AsuC2I	CCSGG	3 cut(s)	163, 445, 779
AsuHPI	GGTGA	3 cut(s)	125, 217, 640
BanI	GGYRCC	1 cut(s)	622
BauI	CACGAG	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	273
BbvCI	CCTCAGC	1 cut(s)	219
BbvI	GCAGC	4 cut(s)	17, 346, 511, 814
BccI	CCATC	3 cut(s)	391, 527, 833
BceAI	ACGGC	3 cut(s)	167, 189, 433
BcgI	CGANNNNNNTGC	2 cut(s)	600, 634
BcnI	CCSGG	3 cut(s)	163, 445, 779
BcoDI	GTCTC	2 cut(s)	271, 449
BfaI	CTAG	2 cut(s)	597, 738
BfmI	CTRYAG	1 cut(s)	498
BfoI	RGCGCY	1 cut(s)	288
BisI	GCNGC	6 cut(s)	6, 335, 516, 525, 810, 828
BlsI	GCNGC	6 cut(s)	7, 336, 517, 526, 811, 829
Bme1390I	CCNGG	3 cut(s)	163, 445, 779
BmiI	GGNNCC	2 cut(s)	624, 710
BmrFI	CCNGG	3 cut(s)	163, 445, 779
BmsI	GCATC	2 cut(s)	139, 549
Bpu10I	CCTNAGC	2 cut(s)	140, 219
BpuMI	CCSGG	3 cut(s)	163, 445, 779
BsaAI	YACGTR	1 cut(s)	358
BsaI	GGTCTC	1 cut(s)	449
BsaJI	CCNNGG	3 cut(s)	162, 590, 606
BsaWI	WCCGGW	3 cut(s)	71, 458, 625
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bsc4I	CCNNNNNNNGG	3 cut(s)	71, 458, 682
Bse118I	RCCGGY	2 cut(s)	458, 625
Bse3DI	GCAATG	1 cut(s)	519
BseDI	CCNNGG	3 cut(s)	162, 590, 606
BseGI	GGATG	2 cut(s)	538, 844
BseLI	CCNNNNNNNGG	3 cut(s)	71, 458, 682
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	2 cut(s)	154, 210
BseRI	GAGGAG	3 cut(s)	24, 317, 721
BseXI	GCAGC	4 cut(s)	17, 346, 511, 814
BseYI	CCCAGC	1 cut(s)	767
BshFI	GGCC	1 cut(s)	182
BshNI	GGYRCC	1 cut(s)	622
BshTI	ACCGGT	2 cut(s)	458, 625
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	6 cut(s)	72, 162, 445, 459, 626, 778
BslFI	GGGAC	1 cut(s)	742
BslI	CCNNNNNNNGG	3 cut(s)	71, 458, 682
BsmAI	GTCTC	2 cut(s)	271, 449
BsmFI	GGGAC	1 cut(s)	742
BsnI	GGCC	1 cut(s)	182
Bso31I	GGTCTC	1 cut(s)	449
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	1 cut(s)	757
BspACI	CCGC	4 cut(s)	203, 516, 562, 809
BspANI	GGCC	1 cut(s)	182
BspCNI	CTCAG	2 cut(s)	153, 211
BspLI	GGNNCC	2 cut(s)	624, 710
BspQI	GCTCTTC	1 cut(s)	252
BspT107I	GGYRCC	1 cut(s)	622
BspTNI	GGTCTC	1 cut(s)	449
BsrDI	GCAATG	1 cut(s)	519
BsrFI	RCCGGY	2 cut(s)	458, 625
BssAI	RCCGGY	2 cut(s)	458, 625
BssECI	CCNNGG	3 cut(s)	162, 590, 606
BssMI	GATC	1 cut(s)	757
BssSI	CACGAG	1 cut(s)	272
Bst2BI	CACGAG	1 cut(s)	272
Bst4CI	ACNGT	3 cut(s)	345, 424, 733
Bst6I	CTCTTC	2 cut(s)	252, 808
BstBAI	YACGTR	1 cut(s)	358
BstDEI	CTNAG	3 cut(s)	140, 219, 894
BstEII	GGTNACC	1 cut(s)	671
BstF5I	GGATG	2 cut(s)	538, 844
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	1 cut(s)	760
BstMAI	GTCTC	2 cut(s)	271, 449
BstMBI	GATC	1 cut(s)	757
BstMWI	GCNNNNNNNGC	7 cut(s)	136, 268, 331, 515, 521, 524, 717
BstNSI	RCATGY	1 cut(s)	15
BstPI	GGTNACC	1 cut(s)	671
BstSCI	CCNGG	3 cut(s)	161, 443, 777
BstSFI	CTRYAG	1 cut(s)	498
BstV1I	GCAGC	4 cut(s)	17, 346, 511, 814
BsuRI	GGCC	1 cut(s)	182
BtsCI	GGATG	2 cut(s)	538, 844
BtsIMutI	CAGTG	1 cut(s)	420
CfoI	GCGC	1 cut(s)	287
Cfr10I	RCCGGY	2 cut(s)	458, 625
Csp6I	GTAC	4 cut(s)	145, 253, 355, 643
CspAI	ACCGGT	2 cut(s)	458, 625
CviAII	CATG	4 cut(s)	12, 583, 698, 755
CviQI	GTAC	4 cut(s)	145, 253, 355, 643
DdeI	CTNAG	3 cut(s)	140, 219, 894
DpnI	GATC	1 cut(s)	759
DpnII	GATC	1 cut(s)	757
EaeI	YGGCCR	1 cut(s)	180
Eam1104I	CTCTTC	2 cut(s)	252, 808
EarI	CTCTTC	2 cut(s)	252, 808
Eco31I	GGTCTC	1 cut(s)	449
Eco91I	GGTNACC	1 cut(s)	671
EcoO65I	GGTNACC	1 cut(s)	671
EcoRI	GAATTC	1 cut(s)	616
FaeI	CATG	4 cut(s)	15, 586, 701, 758
FaqI	GGGAC	1 cut(s)	742
FatI	CATG	4 cut(s)	11, 582, 697, 754
FauI	CCCGC	1 cut(s)	555
Fnu4HI	GCNGC	6 cut(s)	6, 335, 516, 525, 810, 828
FokI	GGATG	2 cut(s)	545, 851
Fsp4HI	GCNGC	6 cut(s)	6, 335, 516, 525, 810, 828
FspBI	CTAG	2 cut(s)	597, 738
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	6 cut(s)	6, 335, 516, 525, 810, 828
GsaI	CCCAGC	1 cut(s)	771
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	182
HapII	CCGG	6 cut(s)	72, 162, 445, 459, 626, 778
HhaI	GCGC	1 cut(s)	287
Hin1II	CATG	4 cut(s)	15, 586, 701, 758
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HinfI	GANTC	6 cut(s)	75, 96, 328, 448, 503, 586
HpaII	CCGG	6 cut(s)	72, 162, 445, 459, 626, 778
HphI	GGTGA	3 cut(s)	125, 217, 640
Hpy166II	GTNNAC	3 cut(s)	241, 580, 643
Hpy188I	TCNGA	4 cut(s)	382, 591, 607, 861
Hpy188III	TCNNGA	2 cut(s)	436, 452
Hpy8I	GTNNAC	3 cut(s)	241, 580, 643
Hpy99I	CGWCG	1 cut(s)	437
HpyAV	CCTTC	1 cut(s)	542
HpyCH4III	ACNGT	3 cut(s)	345, 424, 733
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	5 cut(s)	130, 363, 527, 743, 754
HpyF10VI	GCNNNNNNNGC	7 cut(s)	136, 268, 331, 515, 521, 524, 717
HpyF3I	CTNAG	3 cut(s)	140, 219, 894
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	4 cut(s)	15, 586, 701, 758
HspAI	GCGC	1 cut(s)	285
Kzo9I	GATC	1 cut(s)	757
LguI	GCTCTTC	1 cut(s)	252
LmnI	GCTCC	1 cut(s)	708
Lsp1109I	GCAGC	4 cut(s)	17, 346, 511, 814
LweI	GCATC	2 cut(s)	139, 549
MaeI	CTAG	2 cut(s)	597, 738
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	3 cut(s)	76, 479, 671
MalI	GATC	1 cut(s)	759
MboI	GATC	1 cut(s)	757
MboII	GAAGA	9 cut(s)	114, 163, 236, 239, 269, 359, 643, 784, 795
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	2 cut(s)	81, 616
MlyI	GAGTC	4 cut(s)	84, 457, 497, 595
MmeI	TCCRAC	1 cut(s)	839
MseI	TTAA	5 cut(s)	17, 90, 408, 464, 882
MslI	CAYNNNNRTG	1 cut(s)	488
MspI	CCGG	6 cut(s)	72, 162, 445, 459, 626, 778
MspR9I	CCNGG	3 cut(s)	163, 445, 779
MwoI	GCNNNNNNNGC	7 cut(s)	136, 268, 331, 515, 521, 524, 717
NciI	CCSGG	3 cut(s)	163, 445, 779
NdeII	GATC	1 cut(s)	757
NlaIII	CATG	4 cut(s)	15, 586, 701, 758
NlaIV	GGNNCC	2 cut(s)	624, 710
NmuCI	GTSAC	1 cut(s)	76
NspI	RCATGY	1 cut(s)	15
PciSI	GCTCTTC	1 cut(s)	252
PfeI	GAWTC	2 cut(s)	96, 328
PfoI	TCCNGGA	1 cut(s)	443
PinAI	ACCGGT	2 cut(s)	458, 625
PkrI	GCNGC	6 cut(s)	7, 336, 517, 526, 811, 829
PleI	GAGTC	4 cut(s)	83, 456, 497, 594
PpsI	GAGTC	4 cut(s)	83, 456, 497, 594
Ppu21I	YACGTR	1 cut(s)	358
PsiI	TTATAA	1 cut(s)	657
PspEI	GGTNACC	1 cut(s)	671
PspFI	CCCAGC	1 cut(s)	767
PspN4I	GGNNCC	2 cut(s)	624, 710
PsrI	GAACNNNNNNTAC	2 cut(s)	626, 658
RsaI	GTAC	4 cut(s)	146, 254, 356, 644
RsaNI	GTAC	4 cut(s)	145, 253, 355, 643
RseI	CAYNNNNRTG	1 cut(s)	488
SapI	GCTCTTC	1 cut(s)	252
SaqAI	TTAA	5 cut(s)	17, 90, 408, 464, 882
SatI	GCNGC	6 cut(s)	6, 335, 516, 525, 810, 828
Sau3AI	GATC	1 cut(s)	757
SchI	GAGTC	4 cut(s)	84, 457, 497, 595
ScrFI	CCNGG	3 cut(s)	163, 445, 779
SduI	GDGCHC	1 cut(s)	273
SfaNI	GCATC	2 cut(s)	139, 549
SfcI	CTRYAG	1 cut(s)	498
SgrAI	CRCCGGYG	1 cut(s)	625
SmiMI	CAYNNNNRTG	1 cut(s)	488
Sse9I	AATT	2 cut(s)	81, 616
SsiI	CCGC	4 cut(s)	203, 516, 562, 809
SspMI	CTAG	2 cut(s)	597, 738
StyD4I	CCNGG	3 cut(s)	161, 443, 777
TaaI	ACNGT	3 cut(s)	345, 424, 733
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	2 cut(s)	149, 435
TasI	AATT	2 cut(s)	81, 616
TauI	GCSGC	2 cut(s)	518, 812
TfiI	GAWTC	2 cut(s)	96, 328
Tru1I	TTAA	5 cut(s)	17, 90, 408, 464, 882
Tru9I	TTAA	5 cut(s)	17, 90, 408, 464, 882
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	4 cut(s)	5, 334, 524, 827
Tsp45I	GTSAC	1 cut(s)	76
TspGWI	ACGGA	2 cut(s)	421, 860
TspRI	CASTG	1 cut(s)	427
XapI	RAATTY	1 cut(s)	616
XceI	RCATGY	1 cut(s)	15
XcmI	CCANNNNNNNNNTGG	1 cut(s)	526
XspI	CTAG	2 cut(s)	597, 738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.