Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0011085

Physical Location & Seq

Genomic Coordinates Forward (+)

18073549 .. 18074740

Gene Structure 1192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g15630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGACACAAATATGGAGCCGGAAAAAAAAAAAAAAAAAAAAAAAATTCCTAGTTGTGGAGCTACTGATCAGCTTGGCTATGGCGGCCACTTGCTTAAACCTAACACCCACTCTATCTTCCTCTTGGATTACACCAAAACGCACCGTTTCAAATTGGGTCTTGTCGCCTTTATTGCAGCAGAAGATTAAGTACCCCAATTTGAAGGCTGGGGTTTTCACGGCGTTGGCTGTGGTGGAAGAGCGGGAGGGAGGCCTAGTCACTGACGACGGAGGAGTGGCGGAGTACGAGTACGACAGTCGAAACGACGACCATTCGGATGGGGGATTGGACGACAAGCAAGAGCAGTCAAGACCCTGTGAGCTGTATGTGTGCAATATTCCGAGAAGCATTGATGTTCCGGACCTGATGGAAATGTTCAACCCTCACGGAACTGTTTTCTCCGCTGAGATTTGCCGGAGCCCGGATACTGGGCTCAGCCGCGGATGCGGCTACGTCACCATGGGATCCATGGACGCTGCGAAAACCGCCATTGCTGCATTGGATCGATCTGATGTTGGAGGGAGGGAAATGCGGGTGAGATTTTCGGTTCATATGAATCCGAAGAGGAAGAACACCGAGGCATTGAATTCATCACCGGTGAAAAACATGGTGTATGAGAGCCCTCACAAACTCTACGTCGGCAACCTTGCGCGGGCTGTCCAGCCTCATGTTTTGAGAAGCCATTTTAGCCAGTTTGGGACCGTAGCTAGCGCAAAAGTGTTGCACGACCGCAAGGCAGGGATGAATCGCGCTTATGGGTTCCTCTCTTTCTCTTCGGCTGCAGAACGCGATGCAGCAATGTCGTTAAATGGAACGGAGTTCTGCGGTCGGAGAATAGTGGTTAGAGGACTTCCAGAAACGACTTACACTGCAGCGAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

308

Amino Acids

33.91

Weight (kDa)

9.3

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	121 - 191	2.4e-11	RNA recognition motif
RRM_1	PF00076	224 - 292	3.1e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01080 AT1G01080 AT1G01080
fragaria_vesca	FvH4_7g17690
malus_domestica	MD07G1160000.v1.1
pyrus_communis	pycom07g15630
rosa_chinensis	RchiOBHm_Chr1g0361121
rosa_laevigata	RLG00000027747
rosa_multiflora	Rmu_co8199314.1_g000001 Rmu_co8203846.1_g000001 Rmu_sc0002863.1_g000038 Rmu_sc0020096.1_g000002
rosa_roxburghii	Rroxscaffold_4G00295420
rosa_rugosa	Rorug01G0285700
rosa_samantha	Rh1AG297200 Rh1BG261500 Rh1CG278600 Rh1DG291300
rosa_wichuraiana	Rw1G026250 Rw1G026930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	241
AccII	CGCG	4 cut(s)	480, 691, 789, 828
AccIII	TCCGGA	1 cut(s)	397
AclWI	GGATC	3 cut(s)	498, 511, 549
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	2 cut(s)	44, 625
AfaI	GTAC	3 cut(s)	191, 284, 290
AfiI	CCNNNNNNNGG	4 cut(s)	55, 460, 467, 691
AgeI	ACCGGT	1 cut(s)	634
AgsI	TTSAA	4 cut(s)	150, 202, 418, 625
AluBI	AGCT	4 cut(s)	61, 72, 361, 746
AluI	AGCT	4 cut(s)	61, 72, 361, 746
AlwI	GGATC	3 cut(s)	498, 511, 549
Aor13HI	TCCGGA	1 cut(s)	397
AoxI	GGCC	2 cut(s)	84, 250
ApeKI	GCWGC	6 cut(s)	175, 515, 533, 818, 833, 911
ApoI	RAATTY	2 cut(s)	44, 625
ArsI	GACNNNNNNTTYG	2 cut(s)	660, 692
AsiGI	ACCGGT	1 cut(s)	634
AspLEI	GCGC	3 cut(s)	691, 752, 791
AspS9I	GGNCC	2 cut(s)	400, 738
AsuC2I	CCSGG	1 cut(s)	461
AsuHPI	GGTGA	4 cut(s)	487, 586, 624, 649
AsuNHI	GCTAGC	1 cut(s)	746
AvaII	GGWCC	2 cut(s)	400, 738
BamHI	GGATCC	1 cut(s)	503
BanII	GRGCYC	3 cut(s)	461, 474, 662
BarI	GAAGNNNNNNTAC	2 cut(s)	173, 205
BbvI	GCAGC	5 cut(s)	187, 502, 520, 805, 845
BccI	CCATC	2 cut(s)	311, 400
BceAI	ACGGC	1 cut(s)	234
BcgI	CGANNNNNNTGC	2 cut(s)	822, 856
BciVI	GTATCC	1 cut(s)	457
BclI	TGATCA	1 cut(s)	66
BcnI	CCSGG	1 cut(s)	461
BfaI	CTAG	3 cut(s)	50, 254, 747
BfmI	CTRYAG	2 cut(s)	819, 909
BfuI	GTATCC	1 cut(s)	457
BisI	GCNGC	9 cut(s)	84, 176, 478, 487, 516, 534, 819, 834, 912
BlpI	GCTNAGC	1 cut(s)	473
BlsI	GCNGC	9 cut(s)	85, 177, 479, 488, 517, 535, 820, 835, 913
Bme1390I	CCNGG	1 cut(s)	461
Bme18I	GGWCC	2 cut(s)	400, 738
BmgT120I	GGNCC	2 cut(s)	400, 738
BmiI	GGNNCC	5 cut(s)	17, 458, 505, 739, 800
BmrFI	CCNGG	1 cut(s)	461
BmrI	ACTGGG	1 cut(s)	477
BmsI	GCATC	2 cut(s)	473, 820
BmtI	GCTAGC	1 cut(s)	750
BmuI	ACTGGG	1 cut(s)	477
Bpu1102I	GCTNAGC	1 cut(s)	473
BpuMI	CCSGG	1 cut(s)	461
Bsa29I	ATCGAT	1 cut(s)	544
BsaJI	CCNNGG	4 cut(s)	478, 498, 507, 615
BsaWI	WCCGGW	2 cut(s)	397, 634
BsaXI	ACNNNNNCTCC	4 cut(s)	240, 270, 272, 302
Bsc4I	CCNNNNNNNGG	4 cut(s)	55, 460, 467, 691
Bse118I	RCCGGY	1 cut(s)	634
Bse1I	ACTGG	2 cut(s)	472, 730
Bse3DI	GCAATG	2 cut(s)	528, 843
BseAI	TCCGGA	1 cut(s)	397
BseCI	ATCGAT	1 cut(s)	544
BseDI	CCNNGG	4 cut(s)	478, 498, 507, 615
BseGI	GGATG	3 cut(s)	322, 488, 786
BseLI	CCNNNNNNNGG	4 cut(s)	55, 460, 467, 691
BseMI	GCAATG	2 cut(s)	528, 843
BseMII	CTCAG	2 cut(s)	435, 487
BseNI	ACTGG	2 cut(s)	472, 730
BseRI	GAGGAG	1 cut(s)	285
BseXI	GCAGC	5 cut(s)	187, 502, 520, 805, 845
BseYI	CCCAGC	1 cut(s)	206
Bsh1236I	CGCG	4 cut(s)	480, 691, 789, 828
Bsh1285I	CGRYCG	2 cut(s)	769, 868
BshFI	GGCC	2 cut(s)	86, 252
BshTI	ACCGGT	1 cut(s)	634
BshVI	ATCGAT	1 cut(s)	544
BsiEI	CGRYCG	2 cut(s)	769, 868
BsiSI	CCGG	5 cut(s)	19, 398, 454, 461, 635
BslFI	GGGAC	1 cut(s)	751
BslI	CCNNNNNNNGG	4 cut(s)	55, 460, 467, 691
BsmFI	GGGAC	1 cut(s)	751
BsnI	GGCC	2 cut(s)	86, 252
Bsp1286I	GDGCHC	3 cut(s)	461, 474, 662
Bsp13I	TCCGGA	1 cut(s)	397
Bsp143I	GATC	4 cut(s)	66, 503, 541, 545
Bsp1720I	GCTNAGC	1 cut(s)	473
Bsp19I	CCATGG	2 cut(s)	498, 507
BspANI	GGCC	2 cut(s)	86, 252
BspCNI	CTCAG	2 cut(s)	436, 486
BspDI	ATCGAT	1 cut(s)	544
BspEI	TCCGGA	1 cut(s)	397
BspFNI	CGCG	4 cut(s)	480, 691, 789, 828
BspLI	GGNNCC	5 cut(s)	17, 458, 505, 739, 800
BspMAI	CTGCAG	2 cut(s)	823, 913
BspOI	GCTAGC	1 cut(s)	750
BspPI	GGATC	3 cut(s)	498, 511, 549
BspQI	GCTCTTC	1 cut(s)	231
BsrBI	CCGCTC	1 cut(s)	241
BsrDI	GCAATG	2 cut(s)	528, 843
BsrFI	RCCGGY	1 cut(s)	634
BsrI	ACTGG	2 cut(s)	472, 730
BssAI	RCCGGY	1 cut(s)	634
BssECI	CCNNGG	4 cut(s)	478, 498, 507, 615
BssMI	GATC	4 cut(s)	66, 503, 541, 545
BssT1I	CCWWGG	2 cut(s)	498, 507
Bst4CI	ACNGT	4 cut(s)	145, 296, 433, 742
Bst6I	CTCTTC	3 cut(s)	231, 596, 817
BstC8I	GCNNGC	2 cut(s)	693, 748
BstDEI	CTNAG	2 cut(s)	444, 473
BstDSI	CCRYGG	3 cut(s)	478, 498, 507
BstF5I	GGATG	3 cut(s)	322, 488, 786
BstFNI	CGCG	4 cut(s)	480, 691, 789, 828
BstHHI	GCGC	3 cut(s)	691, 752, 791
BstKTI	GATC	4 cut(s)	69, 506, 544, 548
BstMBI	GATC	4 cut(s)	66, 503, 541, 545
BstMCI	CGRYCG	2 cut(s)	769, 868
BstMWI	GCNNNNNNNGC	7 cut(s)	83, 172, 483, 486, 524, 533, 726
BstSCI	CCNGG	1 cut(s)	459
BstSFI	CTRYAG	2 cut(s)	819, 909
BstUI	CGCG	4 cut(s)	480, 691, 789, 828
BstV1I	GCAGC	5 cut(s)	187, 502, 520, 805, 845
BstX2I	RGATCY	1 cut(s)	503
BstXI	CCANNNNNNTGG	1 cut(s)	317
BstYI	RGATCY	1 cut(s)	503
Bsu15I	ATCGAT	1 cut(s)	544
BsuI	GTATCC	1 cut(s)	457
BsuRI	GGCC	2 cut(s)	86, 252
BsuTUI	ATCGAT	1 cut(s)	544
BtgI	CCRYGG	3 cut(s)	478, 498, 507
BtgZI	GCGATG	1 cut(s)	843
BtsCI	GGATG	3 cut(s)	322, 488, 786
BtsI	GCAGTG	1 cut(s)	906
BtsIMutI	CAGTG	2 cut(s)	258, 906
Cac8I	GCNNGC	2 cut(s)	693, 748
CfoI	GCGC	3 cut(s)	691, 752, 791
Cfr10I	RCCGGY	1 cut(s)	634
Cfr13I	GGNCC	2 cut(s)	400, 738
Cfr42I	CCGCGG	1 cut(s)	481
ClaI	ATCGAT	1 cut(s)	544
CseI	GACGC	1 cut(s)	521
Csp6I	GTAC	3 cut(s)	190, 283, 289
CspAI	ACCGGT	1 cut(s)	634
CviAII	CATG	4 cut(s)	499, 508, 646, 707
CviQI	GTAC	3 cut(s)	190, 283, 289
DdeI	CTNAG	2 cut(s)	444, 473
DpnI	GATC	4 cut(s)	68, 505, 543, 547
DpnII	GATC	4 cut(s)	66, 503, 541, 545
EaeI	YGGCCR	1 cut(s)	84
Eam1104I	CTCTTC	3 cut(s)	231, 596, 817
EarI	CTCTTC	3 cut(s)	231, 596, 817
EciI	GGCGGA	1 cut(s)	293
Eco130I	CCWWGG	2 cut(s)	498, 507
Eco147I	AGGCCT	1 cut(s)	252
Eco24I	GRGCYC	3 cut(s)	461, 474, 662
Eco47I	GGWCC	2 cut(s)	400, 738
EcoRI	GAATTC	1 cut(s)	625
EcoT14I	CCWWGG	2 cut(s)	498, 507
EcoT38I	GRGCYC	3 cut(s)	461, 474, 662
ErhI	CCWWGG	2 cut(s)	498, 507
FaeI	CATG	4 cut(s)	502, 511, 649, 710
FaqI	GGGAC	1 cut(s)	751
FatI	CATG	4 cut(s)	498, 507, 645, 706
FauI	CCCGC	3 cut(s)	234, 564, 684
FauNDI	CATATG	1 cut(s)	591
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	9 cut(s)	84, 176, 478, 487, 516, 534, 819, 834, 912
FokI	GGATG	3 cut(s)	329, 495, 793
FriOI	GRGCYC	3 cut(s)	461, 474, 662
Fsp4HI	GCNGC	9 cut(s)	84, 176, 478, 487, 516, 534, 819, 834, 912
FspBI	CTAG	3 cut(s)	50, 254, 747
GlaI	GCGC	3 cut(s)	690, 751, 790
GluI	GCNGC	9 cut(s)	84, 176, 478, 487, 516, 534, 819, 834, 912
GsaI	CCCAGC	1 cut(s)	210
HaeIII	GGCC	2 cut(s)	86, 252
HapII	CCGG	5 cut(s)	19, 398, 454, 461, 635
HgaI	GACGC	1 cut(s)	521
HhaI	GCGC	3 cut(s)	691, 752, 791
Hin1II	CATG	4 cut(s)	502, 511, 649, 710
Hin6I	GCGC	3 cut(s)	689, 750, 789
HinP1I	GCGC	3 cut(s)	689, 750, 789
HinfI	GANTC	2 cut(s)	595, 784
HpaII	CCGG	5 cut(s)	19, 398, 454, 461, 635
HphI	GGTGA	4 cut(s)	487, 586, 624, 649
Hpy188I	TCNGA	5 cut(s)	316, 381, 550, 600, 870
Hpy188III	TCNNGA	3 cut(s)	348, 398, 893
Hpy99I	CGWCG	3 cut(s)	269, 308, 680
HpyAV	CCTTC	1 cut(s)	196
HpyCH4III	ACNGT	4 cut(s)	145, 296, 433, 742
HpyCH4IV	ACGT	2 cut(s)	492, 675
HpyCH4V	TGCA	7 cut(s)	175, 372, 536, 763, 821, 833, 911
HpyF10VI	GCNNNNNNNGC	7 cut(s)	83, 172, 483, 486, 524, 533, 726
HpyF3I	CTNAG	2 cut(s)	444, 473
HpySE526I	ACGT	2 cut(s)	492, 675
Hsp92II	CATG	4 cut(s)	502, 511, 649, 710
HspAI	GCGC	3 cut(s)	689, 750, 789
Kpn2I	TCCGGA	1 cut(s)	397
Ksp22I	TGATCA	1 cut(s)	66
KspI	CCGCGG	1 cut(s)	481
Kzo9I	GATC	4 cut(s)	66, 503, 541, 545
LguI	GCTCTTC	1 cut(s)	231
LmnI	GCTCC	3 cut(s)	15, 58, 456
Lsp1109I	GCAGC	5 cut(s)	187, 502, 520, 805, 845
LweI	GCATC	2 cut(s)	473, 820
MaeI	CTAG	3 cut(s)	50, 254, 747
MaeII	ACGT	2 cut(s)	492, 675
MaeIII	GTNAC	2 cut(s)	256, 493
MalI	GATC	4 cut(s)	68, 505, 543, 547
MbiI	CCGCTC	1 cut(s)	241
MboI	GATC	4 cut(s)	66, 503, 541, 545
MboII	GAAGA	6 cut(s)	108, 193, 248, 613, 619, 804
MflI	RGATCY	1 cut(s)	503
MhlI	GDGCHC	3 cut(s)	461, 474, 662
MluCI	AATT	4 cut(s)	44, 151, 196, 625
MmeI	TCCRAC	2 cut(s)	535, 848
MroI	TCCGGA	1 cut(s)	397
MseI	TTAA	3 cut(s)	95, 186, 845
MslI	CAYNNNNRTG	2 cut(s)	10, 315
MspA1I	CMGCKG	2 cut(s)	443, 480
MspI	CCGG	5 cut(s)	19, 398, 454, 461, 635
MspR9I	CCNGG	1 cut(s)	461
MvnI	CGCG	4 cut(s)	480, 691, 789, 828
MwoI	GCNNNNNNNGC	7 cut(s)	83, 172, 483, 486, 524, 533, 726
NciI	CCSGG	1 cut(s)	461
NcoI	CCATGG	2 cut(s)	498, 507
NdeI	CATATG	1 cut(s)	591
NdeII	GATC	4 cut(s)	66, 503, 541, 545
NheI	GCTAGC	1 cut(s)	746
NlaIII	CATG	4 cut(s)	502, 511, 649, 710
NlaIV	GGNNCC	5 cut(s)	17, 458, 505, 739, 800
NmuCI	GTSAC	2 cut(s)	256, 493
PceI	AGGCCT	1 cut(s)	252
PciSI	GCTCTTC	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	595, 784
PinAI	ACCGGT	1 cut(s)	634
PkrI	GCNGC	9 cut(s)	85, 177, 479, 488, 517, 535, 820, 835, 913
PspFI	CCCAGC	1 cut(s)	206
PspN4I	GGNNCC	5 cut(s)	17, 458, 505, 739, 800
PspPI	GGNCC	2 cut(s)	400, 738
PstI	CTGCAG	2 cut(s)	823, 913
PsuI	RGATCY	1 cut(s)	503
RsaI	GTAC	3 cut(s)	191, 284, 290
RsaNI	GTAC	3 cut(s)	190, 283, 289
RseI	CAYNNNNRTG	2 cut(s)	10, 315
SacII	CCGCGG	1 cut(s)	481
SapI	GCTCTTC	1 cut(s)	231
SaqAI	TTAA	3 cut(s)	95, 186, 845
SatI	GCNGC	9 cut(s)	84, 176, 478, 487, 516, 534, 819, 834, 912
Sau3AI	GATC	4 cut(s)	66, 503, 541, 545
Sau96I	GGNCC	2 cut(s)	400, 738
ScrFI	CCNGG	1 cut(s)	461
SduI	GDGCHC	3 cut(s)	461, 474, 662
SetI	ASST	9 cut(s)	63, 74, 102, 363, 405, 495, 678, 687, 748
SfaNI	GCATC	2 cut(s)	473, 820
SfcI	CTRYAG	2 cut(s)	819, 909
Sfr303I	CCGCGG	1 cut(s)	481
SgrAI	CRCCGGYG	1 cut(s)	634
SgrBI	CCGCGG	1 cut(s)	481
SinI	GGWCC	2 cut(s)	400, 738
SmiMI	CAYNNNNRTG	2 cut(s)	10, 315
Sse9I	AATT	4 cut(s)	44, 151, 196, 625
SseBI	AGGCCT	1 cut(s)	252
SspI	AATATT	1 cut(s)	376
SspMI	CTAG	3 cut(s)	50, 254, 747
StuI	AGGCCT	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	459
StyI	CCWWGG	2 cut(s)	498, 507
TaaI	ACNGT	4 cut(s)	145, 296, 433, 742
TaiI	ACGT	2 cut(s)	495, 678
TaqI	TCGA	2 cut(s)	298, 544
TasI	AATT	4 cut(s)	44, 151, 196, 625
TauI	GCSGC	3 cut(s)	86, 480, 489
TfiI	GAWTC	2 cut(s)	595, 784
Tru1I	TTAA	3 cut(s)	95, 186, 845
Tru9I	TTAA	3 cut(s)	95, 186, 845
TscAI	CASTG	2 cut(s)	265, 913
TseFI	GTSAC	2 cut(s)	256, 493
TseI	GCWGC	6 cut(s)	175, 515, 533, 818, 833, 911
Tsp45I	GTSAC	2 cut(s)	256, 493
TspDTI	ATGAA	4 cut(s)	578, 608, 618, 797
TspGWI	ACGGA	3 cut(s)	282, 441, 869
TspRI	CASTG	2 cut(s)	265, 913
VpaK11BI	GGWCC	2 cut(s)	400, 738
XapI	RAATTY	2 cut(s)	44, 625
XcmI	CCANNNNNNNNNTGG	2 cut(s)	505, 535
XspI	CTAG	3 cut(s)	50, 254, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.