Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0011085

Physical Location & Seq

Genomic Coordinates Reverse (-)

15477771 .. 15479317

Gene Structure 1547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00295420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCTATGGCAGCCACATGCTTAAACATAACACCCTCTTCTCCCTCTTGGATTACTAACAACACCAGCCCGAACACCGGAGTCACAGTTTCACTTAAACGATTCGTTTTCAGTTCCGTTCCATTTTCTTCCTTGCATCGCCGGCTCAGGTACTCGAAGAACAGAGCCGGGGTTTTGACGGCGTTGGCCTTAGTGGAACAGGAACAGGCGGTGAGTTTAGTGGCTGAGGAAGAAGAACAAGGTGTGGACCATAATGGGTATGAAGAGCAGTATGAGCATGAGAGACACAGCGCCGATGTTTCAGGCGAGGAGGGATTGGAAATGGAGAAGCAGAATCGGCAGCCAAGACCGTGTGAGTTGTACGTGTGCAATCTTCCAAGAAGCTCTGACATTGAGGACTTGATGGAGATGTTTAAGCCACACGGGACTGTTTTCTCCGTCGAGATTTCCCGGAGTCCGGAGACCGGTTTAAGCAGAGGCTGTGGTTACATTACAATGGGCTCTATAGACTCTGCTAAAGCCGCCATTGCTGCATTGGATGGGATTGATGTTGCAGGGAGGGAGATGCGGGTTAGGTTTTCGGTTCATATGAGTCCGAGGACTAGGAACTCCGAGGCATTGAATTCGGCACCGGTGAAGAACTTGGTGTACGAAAGCCCTTATAAGCTCTATGTTGGTAATCTTGCTTGGGCTGTCCAGCCACATGCTTTGAGGAGCCATTTCAGCAAGTTTGGGACTGTGGCTAGTGCAAGAGTGTTGCATGATCGTAAAGCTGGGAAGAACCGGGCTTATGGGTTTATCTCATTCTCTTCGGCTGCAGAGCGTGATAAAGCGGCCACTTTGGATGGAACGGAGTTTTTTGGTCGGAGGATAATAGTTAGAGAACTTAAAGAAAGGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

300

Amino Acids

33.28

Weight (kDa)

7.74

Isoelectric Point (pI)

47.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	120 - 190	9.9e-14	RNA recognition motif
RRM_1	PF00076	223 - 291	6.9e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01080 AT1G01080 AT1G01080
fragaria_vesca	FvH4_7g17690
malus_domestica	MD07G1160000.v1.1
pyrus_communis	pycom07g15630
rosa_chinensis	RchiOBHm_Chr1g0361121
rosa_laevigata	RLG00000027747
rosa_multiflora	Rmu_co8199314.1_g000001 Rmu_co8203846.1_g000001 Rmu_sc0002863.1_g000038 Rmu_sc0020096.1_g000002
rosa_roxburghii	Rroxscaffold_4G00295420
rosa_rugosa	Rorug01G0285700
rosa_samantha	Rh1AG297200 Rh1BG261500 Rh1CG278600 Rh1DG291300
rosa_wichuraiana	Rw1G026250 Rw1G026930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	663
AccB1I	GGYRCC	1 cut(s)	628
AccIII	TCCGGA	1 cut(s)	457
AciI	CCGC	4 cut(s)	209, 522, 568, 833
AcoI	YGGCCR	1 cut(s)	834
AcsI	RAATTY	1 cut(s)	622
AfaI	GTAC	3 cut(s)	152, 362, 650
AfiI	CCNNNNNNNGG	3 cut(s)	77, 457, 464
AflIII	ACRYGT	1 cut(s)	363
AgeI	ACCGGT	2 cut(s)	464, 631
AgsI	TTSAA	1 cut(s)	622
AluBI	AGCT	3 cut(s)	384, 667, 773
AluI	AGCT	3 cut(s)	384, 667, 773
Alw26I	GTCTC	2 cut(s)	277, 455
AlwNI	CAGNNNCTG	1 cut(s)	480
Aor13HI	TCCGGA	1 cut(s)	457
AoxI	GGCC	2 cut(s)	186, 834
ApeKI	GCWGC	4 cut(s)	11, 340, 530, 815
ApoI	RAATTY	1 cut(s)	622
AsiGI	ACCGGT	2 cut(s)	464, 631
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	247
AsuC2I	CCSGG	3 cut(s)	169, 451, 785
AsuHPI	GGTGA	2 cut(s)	223, 646
AvaII	GGWCC	1 cut(s)	247
BanI	GGYRCC	1 cut(s)	628
BanII	GRGCYC	1 cut(s)	503
BbvCI	CCTCAGC	1 cut(s)	225
BbvI	GCAGC	4 cut(s)	23, 352, 517, 802
BccI	CCATC	3 cut(s)	397, 533, 839
BceAI	ACGGC	1 cut(s)	195
BcgI	CGANNNNNNTGC	2 cut(s)	606, 640
BcnI	CCSGG	3 cut(s)	169, 451, 785
BcoDI	GTCTC	2 cut(s)	277, 455
BfaI	CTAG	2 cut(s)	603, 744
BfmI	CTRYAG	2 cut(s)	504, 816
BfoI	RGCGCY	1 cut(s)	294
BisI	GCNGC	6 cut(s)	12, 341, 522, 531, 816, 834
BlsI	GCNGC	6 cut(s)	13, 342, 523, 532, 817, 835
Bme1390I	CCNGG	3 cut(s)	169, 451, 785
Bme18I	GGWCC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	2 cut(s)	630, 716
BmrFI	CCNGG	3 cut(s)	169, 451, 785
BmsI	GCATC	2 cut(s)	145, 555
Bpu10I	CCTNAGC	2 cut(s)	146, 225
BpuMI	CCSGG	3 cut(s)	169, 451, 785
BsaAI	YACGTR	1 cut(s)	364
BsaI	GGTCTC	1 cut(s)	455
BsaJI	CCNNGG	3 cut(s)	168, 596, 612
BsaWI	WCCGGW	4 cut(s)	77, 457, 464, 631
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 457, 464
Bse118I	RCCGGY	3 cut(s)	141, 464, 631
Bse3DI	GCAATG	1 cut(s)	525
BseAI	TCCGGA	1 cut(s)	457
BseDI	CCNNGG	3 cut(s)	168, 596, 612
BseGI	GGATG	2 cut(s)	544, 850
BseLI	CCNNNNNNNGG	3 cut(s)	77, 457, 464
BseMI	GCAATG	1 cut(s)	525
BseMII	CTCAG	2 cut(s)	160, 216
BseRI	GAGGAG	2 cut(s)	323, 727
BseXI	GCAGC	4 cut(s)	23, 352, 517, 802
BseYI	CCCAGC	1 cut(s)	773
BshFI	GGCC	2 cut(s)	188, 836
BshNI	GGYRCC	1 cut(s)	628
BshTI	ACCGGT	2 cut(s)	464, 631
BsiSI	CCGG	8 cut(s)	78, 142, 168, 451, 458, 465, 632, 784
BslFI	GGGAC	2 cut(s)	439, 748
BslI	CCNNNNNNNGG	3 cut(s)	77, 457, 464
BsmAI	GTCTC	2 cut(s)	277, 455
BsmFI	GGGAC	2 cut(s)	439, 748
BsnI	GGCC	2 cut(s)	188, 836
Bso31I	GGTCTC	1 cut(s)	455
Bsp1286I	GDGCHC	1 cut(s)	503
Bsp13I	TCCGGA	1 cut(s)	457
Bsp143I	GATC	1 cut(s)	763
BspACI	CCGC	4 cut(s)	209, 522, 568, 833
BspANI	GGCC	2 cut(s)	188, 836
BspCNI	CTCAG	2 cut(s)	159, 217
BspEI	TCCGGA	1 cut(s)	457
BspLI	GGNNCC	2 cut(s)	630, 716
BspMAI	CTGCAG	1 cut(s)	820
BspQI	GCTCTTC	1 cut(s)	258
BspT107I	GGYRCC	1 cut(s)	628
BspTNI	GGTCTC	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	525
BsrFI	RCCGGY	3 cut(s)	141, 464, 631
BssAI	RCCGGY	3 cut(s)	141, 464, 631
BssECI	CCNNGG	3 cut(s)	168, 596, 612
BssMI	GATC	1 cut(s)	763
Bst4CI	ACNGT	4 cut(s)	88, 351, 430, 739
Bst6I	CTCTTC	3 cut(s)	43, 258, 814
BstBAI	YACGTR	1 cut(s)	364
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	4 cut(s)	146, 190, 225, 900
BstF5I	GGATG	2 cut(s)	544, 850
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	1 cut(s)	766
BstMAI	GTCTC	2 cut(s)	277, 455
BstMBI	GATC	1 cut(s)	763
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 142, 274, 337, 521, 527, 530, 723
BstNSI	RCATGY	2 cut(s)	21, 707
BstSCI	CCNGG	3 cut(s)	167, 449, 783
BstSFI	CTRYAG	2 cut(s)	504, 816
BstV1I	GCAGC	4 cut(s)	23, 352, 517, 802
BsuRI	GGCC	2 cut(s)	188, 836
BtgZI	GCGATG	1 cut(s)	122
BtsCI	GGATG	2 cut(s)	544, 850
Cac8I	GCNNGC	1 cut(s)	143
CaiI	CAGNNNCTG	1 cut(s)	480
CfoI	GCGC	1 cut(s)	293
Cfr10I	RCCGGY	3 cut(s)	141, 464, 631
Cfr13I	GGNCC	1 cut(s)	247
Csp6I	GTAC	3 cut(s)	151, 361, 649
CspAI	ACCGGT	2 cut(s)	464, 631
CspCI	CAANNNNNGTGG	2 cut(s)	690, 725
CviAII	CATG	4 cut(s)	18, 278, 704, 761
CviQI	GTAC	3 cut(s)	151, 361, 649
DdeI	CTNAG	4 cut(s)	146, 190, 225, 900
DpnI	GATC	1 cut(s)	765
DpnII	GATC	1 cut(s)	763
EaeI	YGGCCR	1 cut(s)	834
Eam1104I	CTCTTC	3 cut(s)	43, 258, 814
EarI	CTCTTC	3 cut(s)	43, 258, 814
Eco24I	GRGCYC	1 cut(s)	503
Eco31I	GGTCTC	1 cut(s)	455
Eco47I	GGWCC	1 cut(s)	247
EcoRI	GAATTC	1 cut(s)	622
EcoT38I	GRGCYC	1 cut(s)	503
FaeI	CATG	4 cut(s)	21, 281, 707, 764
FaqI	GGGAC	2 cut(s)	439, 748
FatI	CATG	4 cut(s)	17, 277, 703, 760
FauI	CCCGC	1 cut(s)	561
FauNDI	CATATG	1 cut(s)	588
Fnu4HI	GCNGC	6 cut(s)	12, 341, 522, 531, 816, 834
FokI	GGATG	2 cut(s)	551, 857
FriOI	GRGCYC	1 cut(s)	503
Fsp4HI	GCNGC	6 cut(s)	12, 341, 522, 531, 816, 834
FspBI	CTAG	2 cut(s)	603, 744
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	6 cut(s)	12, 341, 522, 531, 816, 834
GsaI	CCCAGC	1 cut(s)	777
HaeII	RGCGCY	1 cut(s)	294
HaeIII	GGCC	2 cut(s)	188, 836
HapII	CCGG	8 cut(s)	78, 142, 168, 451, 458, 465, 632, 784
HhaI	GCGC	1 cut(s)	293
Hin1II	CATG	4 cut(s)	21, 281, 707, 764
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HinfI	GANTC	6 cut(s)	81, 102, 334, 454, 509, 592
HpaII	CCGG	8 cut(s)	78, 142, 168, 451, 458, 465, 632, 784
HphI	GGTGA	2 cut(s)	223, 646
Hpy166II	GTNNAC	2 cut(s)	247, 649
Hpy188I	TCNGA	4 cut(s)	388, 597, 613, 867
Hpy188III	TCNNGA	2 cut(s)	442, 458
Hpy8I	GTNNAC	2 cut(s)	247, 649
Hpy99I	CGWCG	1 cut(s)	443
HpyCH4III	ACNGT	4 cut(s)	88, 351, 430, 739
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	7 cut(s)	136, 369, 533, 554, 749, 760, 818
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 142, 274, 337, 521, 527, 530, 723
HpyF3I	CTNAG	4 cut(s)	146, 190, 225, 900
HpySE526I	ACGT	1 cut(s)	363
Hsp92II	CATG	4 cut(s)	21, 281, 707, 764
HspAI	GCGC	1 cut(s)	291
Kpn2I	TCCGGA	1 cut(s)	457
KroI	GCCGGC	1 cut(s)	141
KroNI	GCCGGC	1 cut(s)	143
Kzo9I	GATC	1 cut(s)	763
LguI	GCTCTTC	1 cut(s)	258
LmnI	GCTCC	1 cut(s)	714
Lsp1109I	GCAGC	4 cut(s)	23, 352, 517, 802
LweI	GCATC	2 cut(s)	145, 555
MaeI	CTAG	2 cut(s)	603, 744
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	2 cut(s)	82, 485
MalI	GATC	1 cut(s)	765
MboI	GATC	1 cut(s)	763
MhlI	GDGCHC	1 cut(s)	503
MluCI	AATT	1 cut(s)	622
MlyI	GAGTC	4 cut(s)	90, 463, 503, 601
MmeI	TCCRAC	1 cut(s)	845
MroI	TCCGGA	1 cut(s)	457
MroNI	GCCGGC	1 cut(s)	141
MseI	TTAA	5 cut(s)	23, 96, 414, 470, 888
MslI	CAYNNNNRTG	1 cut(s)	494
MspI	CCGG	8 cut(s)	78, 142, 168, 451, 458, 465, 632, 784
MspR9I	CCNGG	3 cut(s)	169, 451, 785
MwoI	GCNNNNNNNGC	8 cut(s)	11, 142, 274, 337, 521, 527, 530, 723
NaeI	GCCGGC	1 cut(s)	143
NciI	CCSGG	3 cut(s)	169, 451, 785
NdeI	CATATG	1 cut(s)	588
NdeII	GATC	1 cut(s)	763
NgoMIV	GCCGGC	1 cut(s)	141
NlaIII	CATG	4 cut(s)	21, 281, 707, 764
NlaIV	GGNNCC	2 cut(s)	630, 716
NmuCI	GTSAC	1 cut(s)	82
NspI	RCATGY	2 cut(s)	21, 707
PciSI	GCTCTTC	1 cut(s)	258
PdiI	GCCGGC	1 cut(s)	143
PfeI	GAWTC	2 cut(s)	102, 334
PfoI	TCCNGGA	1 cut(s)	449
PinAI	ACCGGT	2 cut(s)	464, 631
PkrI	GCNGC	6 cut(s)	13, 342, 523, 532, 817, 835
PleI	GAGTC	4 cut(s)	89, 462, 503, 600
PpsI	GAGTC	4 cut(s)	89, 462, 503, 600
Ppu21I	YACGTR	1 cut(s)	364
PsiI	TTATAA	1 cut(s)	663
PspFI	CCCAGC	1 cut(s)	773
PspN4I	GGNNCC	2 cut(s)	630, 716
PspPI	GGNCC	1 cut(s)	247
PsrI	GAACNNNNNNTAC	2 cut(s)	632, 664
PstI	CTGCAG	1 cut(s)	820
PstNI	CAGNNNCTG	1 cut(s)	480
RsaI	GTAC	3 cut(s)	152, 362, 650
RsaNI	GTAC	3 cut(s)	151, 361, 649
RseI	CAYNNNNRTG	1 cut(s)	494
SapI	GCTCTTC	1 cut(s)	258
SaqAI	TTAA	5 cut(s)	23, 96, 414, 470, 888
SatI	GCNGC	6 cut(s)	12, 341, 522, 531, 816, 834
Sau3AI	GATC	1 cut(s)	763
Sau96I	GGNCC	1 cut(s)	247
SchI	GAGTC	4 cut(s)	90, 463, 503, 601
ScrFI	CCNGG	3 cut(s)	169, 451, 785
SduI	GDGCHC	1 cut(s)	503
SetI	ASST	7 cut(s)	152, 244, 366, 386, 578, 669, 775
SfaNI	GCATC	2 cut(s)	145, 555
SfcI	CTRYAG	2 cut(s)	504, 816
SgrAI	CRCCGGYG	1 cut(s)	631
SinI	GGWCC	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	494
Sse9I	AATT	1 cut(s)	622
SsiI	CCGC	4 cut(s)	209, 522, 568, 833
SspMI	CTAG	2 cut(s)	603, 744
StyD4I	CCNGG	3 cut(s)	167, 449, 783
TaaI	ACNGT	4 cut(s)	88, 351, 430, 739
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	2 cut(s)	155, 441
TasI	AATT	1 cut(s)	622
TauI	GCSGC	2 cut(s)	524, 836
TfiI	GAWTC	2 cut(s)	102, 334
Tru1I	TTAA	5 cut(s)	23, 96, 414, 470, 888
Tru9I	TTAA	5 cut(s)	23, 96, 414, 470, 888
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	4 cut(s)	11, 340, 530, 815
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	2 cut(s)	276, 575
TspGWI	ACGGA	3 cut(s)	106, 427, 866
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	1 cut(s)	622
XceI	RCATGY	2 cut(s)	21, 707
XcmI	CCANNNNNNNNNTGG	1 cut(s)	532
XspI	CTAG	2 cut(s)	603, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.