Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8203846.1

Orthogroup ID

OG0011085

Physical Location & Seq

Genomic Coordinates Forward (+)

161 .. 716

Gene Structure 556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8203846.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 556 bp

atggctatggcagccacatgcttaaacataacaccctctcctccctcttggattactaacaacaccagcccgaacaccggagtcacagtttcacttaaacgattcgttttcagttcccttccattttcttccttgcatcgccggctcaggtactcgaagaacagagccggggttttgacggcgttggccgtagtggaacaggaacaggcggtgagtttagtggctgaggaagaagaacaaggtgtggacgataatgggtatgaagagcagtatgggcacgagagacacagcgccgatgtttcaggcgaggacggattggatatggagaagcagaatcggcagccaagaccgtgtgagttgtacgtgtgcaatcttcccagaagctctgacattgaggacttgatggagatgtttaagccacacgggactgttttctccgtcgagatttcccggaatccggagaccggtttaagcagaggctgtggttacattacaatgggctctatagactctgctaaagccgccattgctgcattggatgggattgtaagtctta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

185

Amino Acids

20.21

Weight (kDa)

4.9

Isoelectric Point (pI)

51.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01080 AT1G01080 AT1G01080
fragaria_vesca	FvH4_7g17690
malus_domestica	MD07G1160000.v1.1
pyrus_communis	pycom07g15630
rosa_chinensis	RchiOBHm_Chr1g0361121
rosa_laevigata	RLG00000027747
rosa_multiflora	Rmu_co8199314.1_g000001 Rmu_co8203846.1_g000001 Rmu_sc0002863.1_g000038 Rmu_sc0020096.1_g000002
rosa_roxburghii	Rroxscaffold_4G00295420
rosa_rugosa	Rorug01G0285700
rosa_samantha	Rh1AG297200 Rh1BG261500 Rh1CG278600 Rh1DG291300
rosa_wichuraiana	Rw1G026250 Rw1G026930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	457
AciI	CCGC	2 cut(s)	209, 522
AcoI	YGGCCR	1 cut(s)	186
AfaI	GTAC	2 cut(s)	152, 362
AfiI	CCNNNNNNNGG	3 cut(s)	77, 457, 464
AflIII	ACRYGT	1 cut(s)	363
AgeI	ACCGGT	1 cut(s)	464
AluBI	AGCT	1 cut(s)	384
AluI	AGCT	1 cut(s)	384
Alw26I	GTCTC	2 cut(s)	277, 455
AlwNI	CAGNNNCTG	1 cut(s)	480
Aor13HI	TCCGGA	1 cut(s)	457
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	3 cut(s)	11, 340, 530
AsiGI	ACCGGT	1 cut(s)	464
AspLEI	GCGC	1 cut(s)	293
AsuC2I	CCSGG	2 cut(s)	169, 451
AsuHPI	GGTGA	1 cut(s)	223
BaeGI	GKGCMC	1 cut(s)	279
BanII	GRGCYC	1 cut(s)	503
BauI	CACGAG	1 cut(s)	278
BbvCI	CCTCAGC	1 cut(s)	225
BbvI	GCAGC	3 cut(s)	23, 352, 517
BccI	CCATC	2 cut(s)	397, 533
BceAI	ACGGC	2 cut(s)	173, 195
BcnI	CCSGG	2 cut(s)	169, 451
BcoDI	GTCTC	2 cut(s)	277, 455
BfmI	CTRYAG	1 cut(s)	504
BfoI	RGCGCY	1 cut(s)	294
BisI	GCNGC	4 cut(s)	12, 341, 522, 531
BlsI	GCNGC	4 cut(s)	13, 342, 523, 532
Bme1390I	CCNGG	2 cut(s)	169, 451
BmrFI	CCNGG	2 cut(s)	169, 451
BmsI	GCATC	1 cut(s)	145
Bpu10I	CCTNAGC	2 cut(s)	146, 225
BpuMI	CCSGG	2 cut(s)	169, 451
BsaAI	YACGTR	1 cut(s)	364
BsaI	GGTCTC	1 cut(s)	455
BsaJI	CCNNGG	1 cut(s)	168
BsaWI	WCCGGW	3 cut(s)	77, 457, 464
BsaXI	ACNNNNNCTCC	4 cut(s)	22, 52, 72, 102
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 457, 464
Bse118I	RCCGGY	2 cut(s)	141, 464
Bse3DI	GCAATG	1 cut(s)	525
BseAI	TCCGGA	1 cut(s)	457
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	1 cut(s)	544
BseLI	CCNNNNNNNGG	3 cut(s)	77, 457, 464
BseMI	GCAATG	1 cut(s)	525
BseMII	CTCAG	2 cut(s)	160, 216
BseRI	GAGGAG	1 cut(s)	30
BseSI	GKGCMC	1 cut(s)	279
BseXI	GCAGC	3 cut(s)	23, 352, 517
BshFI	GGCC	1 cut(s)	188
BshTI	ACCGGT	1 cut(s)	464
BsiSI	CCGG	6 cut(s)	78, 142, 168, 451, 458, 465
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	3 cut(s)	77, 457, 464
BsmAI	GTCTC	2 cut(s)	277, 455
BsmFI	GGGAC	1 cut(s)	439
BsnI	GGCC	1 cut(s)	188
Bso31I	GGTCTC	1 cut(s)	455
Bsp1286I	GDGCHC	2 cut(s)	279, 503
Bsp13I	TCCGGA	1 cut(s)	457
BspACI	CCGC	2 cut(s)	209, 522
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	2 cut(s)	159, 217
BspEI	TCCGGA	1 cut(s)	457
BspQI	GCTCTTC	1 cut(s)	258
BspTNI	GGTCTC	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	525
BsrFI	RCCGGY	2 cut(s)	141, 464
BssAI	RCCGGY	2 cut(s)	141, 464
BssECI	CCNNGG	1 cut(s)	168
BssSI	CACGAG	1 cut(s)	278
Bst2BI	CACGAG	1 cut(s)	278
Bst4CI	ACNGT	3 cut(s)	88, 351, 430
Bst6I	CTCTTC	1 cut(s)	258
BstBAI	YACGTR	1 cut(s)	364
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	2 cut(s)	146, 225
BstF5I	GGATG	1 cut(s)	544
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	293
BstMAI	GTCTC	2 cut(s)	277, 455
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 142, 274, 337, 521, 527, 530
BstNSI	RCATGY	1 cut(s)	21
BstSCI	CCNGG	2 cut(s)	167, 449
BstSFI	CTRYAG	1 cut(s)	504
BstSLI	GKGCMC	1 cut(s)	279
BstV1I	GCAGC	3 cut(s)	23, 352, 517
BsuRI	GGCC	1 cut(s)	188
BtgZI	GCGATG	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	544
Cac8I	GCNNGC	1 cut(s)	143
CaiI	CAGNNNCTG	1 cut(s)	480
CfoI	GCGC	1 cut(s)	293
Cfr10I	RCCGGY	2 cut(s)	141, 464
Csp6I	GTAC	2 cut(s)	151, 361
CspAI	ACCGGT	1 cut(s)	464
CviAII	CATG	1 cut(s)	18
CviQI	GTAC	2 cut(s)	151, 361
DdeI	CTNAG	2 cut(s)	146, 225
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	503
Eco31I	GGTCTC	1 cut(s)	455
EcoT38I	GRGCYC	1 cut(s)	503
FaeI	CATG	1 cut(s)	21
FaiI	YATR	7 cut(s)	8, 19, 29, 261, 273, 323, 506
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	1 cut(s)	17
Fnu4HI	GCNGC	4 cut(s)	12, 341, 522, 531
FokI	GGATG	1 cut(s)	551
FriOI	GRGCYC	1 cut(s)	503
Fsp4HI	GCNGC	4 cut(s)	12, 341, 522, 531
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	4 cut(s)	12, 341, 522, 531
HaeII	RGCGCY	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	6 cut(s)	78, 142, 168, 451, 458, 465
HhaI	GCGC	1 cut(s)	293
Hin1II	CATG	1 cut(s)	21
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HinfI	GANTC	5 cut(s)	81, 102, 334, 454, 509
HpaII	CCGG	6 cut(s)	78, 142, 168, 451, 458, 465
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	388
Hpy188III	TCNNGA	2 cut(s)	442, 458
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	1 cut(s)	443
HpyAV	CCTTC	1 cut(s)	128
HpyCH4III	ACNGT	3 cut(s)	88, 351, 430
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	3 cut(s)	136, 369, 533
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 142, 274, 337, 521, 527, 530
HpyF3I	CTNAG	2 cut(s)	146, 225
HpySE526I	ACGT	1 cut(s)	363
Hsp92II	CATG	1 cut(s)	21
HspAI	GCGC	1 cut(s)	291
Kpn2I	TCCGGA	1 cut(s)	457
KroI	GCCGGC	1 cut(s)	141
KroNI	GCCGGC	1 cut(s)	143
LguI	GCTCTTC	1 cut(s)	258
Lsp1109I	GCAGC	3 cut(s)	23, 352, 517
LweI	GCATC	1 cut(s)	145
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	2 cut(s)	82, 485
MboII	GAAGA	6 cut(s)	120, 169, 242, 245, 275, 365
MhlI	GDGCHC	2 cut(s)	279, 503
MlyI	GAGTC	2 cut(s)	90, 503
MnlI	CCTC	7 cut(s)	46, 51, 55, 220, 301, 388, 470
MroI	TCCGGA	1 cut(s)	457
MroNI	GCCGGC	1 cut(s)	141
MseI	TTAA	4 cut(s)	23, 96, 414, 470
MslI	CAYNNNNRTG	1 cut(s)	494
MspI	CCGG	6 cut(s)	78, 142, 168, 451, 458, 465
MspR9I	CCNGG	2 cut(s)	169, 451
MwoI	GCNNNNNNNGC	7 cut(s)	11, 142, 274, 337, 521, 527, 530
NaeI	GCCGGC	1 cut(s)	143
NciI	CCSGG	2 cut(s)	169, 451
NgoMIV	GCCGGC	1 cut(s)	141
NlaIII	CATG	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	21
PciSI	GCTCTTC	1 cut(s)	258
PdiI	GCCGGC	1 cut(s)	143
PfeI	GAWTC	3 cut(s)	102, 334, 454
PfoI	TCCNGGA	1 cut(s)	449
PinAI	ACCGGT	1 cut(s)	464
PkrI	GCNGC	4 cut(s)	13, 342, 523, 532
PleI	GAGTC	2 cut(s)	89, 503
PpsI	GAGTC	2 cut(s)	89, 503
Ppu21I	YACGTR	1 cut(s)	364
PstNI	CAGNNNCTG	1 cut(s)	480
RsaI	GTAC	2 cut(s)	152, 362
RsaNI	GTAC	2 cut(s)	151, 361
RseI	CAYNNNNRTG	1 cut(s)	494
SapI	GCTCTTC	1 cut(s)	258
SaqAI	TTAA	4 cut(s)	23, 96, 414, 470
SatI	GCNGC	4 cut(s)	12, 341, 522, 531
SchI	GAGTC	2 cut(s)	90, 503
ScrFI	CCNGG	2 cut(s)	169, 451
SduI	GDGCHC	2 cut(s)	279, 503
SetI	ASST	4 cut(s)	152, 244, 366, 386
SfaNI	GCATC	1 cut(s)	145
SfcI	CTRYAG	1 cut(s)	504
SmiMI	CAYNNNNRTG	1 cut(s)	494
SsiI	CCGC	2 cut(s)	209, 522
StyD4I	CCNGG	2 cut(s)	167, 449
TaaI	ACNGT	3 cut(s)	88, 351, 430
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	2 cut(s)	155, 441
TauI	GCSGC	1 cut(s)	524
TfiI	GAWTC	3 cut(s)	102, 334, 454
Tru1I	TTAA	4 cut(s)	23, 96, 414, 470
Tru9I	TTAA	4 cut(s)	23, 96, 414, 470
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	3 cut(s)	11, 340, 530
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	276
TspGWI	ACGGA	2 cut(s)	327, 427
XceI	RCATGY	1 cut(s)	21
XcmI	CCANNNNNNNNNTGG	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.