AT1G01180

Methyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016587
Physical Location & Seq
Forward (+)
75390 .. 76845
1456 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G01180.1

Sequence Viewer

Length: 924 bp
ATGAAGGAGGATCGTCGTCTTCCTCACAAACGCGACGCCTTCCAATTCTTGAAAACCAAGGCTGCGTACGTTATCGTCATAGTTCTAACCTACGCCTTTGGTTACTTCTCCGCCTACCACTATCATCAACCGCTGCAGCAGCAGCTGCCACCGTCTACGACAGCCGTGGAAACGACAAAACCTCAAGTTTGTTCAATCGACAACTTCCGAGTTACGACTCCATGCGGCAATCTTGTTCCGCCGGAATTGATTCGCCAGACTGTTATTGACCGGATCTTTAACGGAACTTCTCCGTACATCGATTTCCCACCACCGCACGCCAAGAAGTTTCTCCGGCCAAAAAGAATCAAAGGTTGGGGATCATACGGGGCCGTTTTCGAGAATCTAATCCGCCGAGTCAAACCTAAGACGATCGTCGAAGTCGGGAGTTTTCTCGGCGCGTCGGCGATACACATGGCGAATCTCACGCGCCGACTTGGGCTCGAGGAGACTCAGATTCTATGCGTCGACGACTTCCGTGGCTGGCCCGGTTTTCGAGACCGGTTTAAGGACATGGCTTTGGTTAACGGTGACGTTCTGCTTATGTACCAGTTTATGCAAAACGTGGTTATCTCGGATTTTTCCGGTTCGATATTGCCGGTTCCTTTCTCGACCGGTTCGGCTTTGGAGAAGCTGTGTGAGTGGGGAGTGACGGCGGACCTGGTGGAGATAGACGCGGGTCACGATTTTAATTCGGCATGGGCGGATATAAACCGGGCGGTTCGGATACTCCGACCCGGCGGTGTTATATTTGGTCACGATTATTTCACGGCGGCGGATAATAGAGGAGTGAGGAGAGCCGTGAATCTGTTCGCAGAGATTAACCGGTTAAAGGTCAAAACCGATGGTCAACATTGGGTTATTGATTCGGTCAAAGTAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_24

Protein Analysis

307

Amino Acids

34.7

Weight (kDa)

9.31

Isoelectric Point (pI)

32.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_24 PF13578 139 - 268 2e-13 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016587)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01180
malus_domestica MD07G1156900.v1.1
prunus_persica Prupe.2G195400_v2.0.a1
pyrus_communis pycom07g15350
rosa_chinensis RchiOBHm_Chr1g0360821 RchiOBHm_Chr1g0360831
rosa_laevigata RLG00000027783
rosa_multiflora Rmu_ssc0000022.1_g000046
rosa_roxburghii Rroxscaffold_4G00295780
rosa_rugosa Rorug01G0281900
rosa_samantha Rh1AG293800 Rh1BG258600 Rh1DG288800
rosa_wichuraiana Rw1G026000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 155, 507
AccII CGCG 4 cut(s) 33, 440, 469, 716
AclWI GGATC 3 cut(s) 18, 281, 367
AcoI YGGCCR 1 cut(s) 335
AcyI GRCGYC 1 cut(s) 36
AfaI GTAC 3 cut(s) 68, 296, 587
AfiI CCNNNNNNNGG 2 cut(s) 547, 871
AgeI ACCGGT 3 cut(s) 540, 653, 864
AgsI TTSAA 2 cut(s) 52, 195
AjnI CCWGG 1 cut(s) 699
AjuI GAANNNNNNNTTGG 2 cut(s) 337, 369
AluBI AGCT 2 cut(s) 145, 673
AluI AGCT 2 cut(s) 145, 673
Alw26I GTCTC 2 cut(s) 482, 531
AlwI GGATC 3 cut(s) 18, 281, 367
AlwNI CAGNNNCTG 1 cut(s) 145
Ama87I CYCGRG 1 cut(s) 482
AoxI GGCC 3 cut(s) 335, 369, 524
ApeKI GCWGC 6 cut(s) 62, 133, 136, 139, 142, 145
AsiGI ACCGGT 3 cut(s) 540, 653, 864
Asp700I GAANNNNTTC 2 cut(s) 249, 848
AspLEI GCGC 2 cut(s) 440, 471
AspS9I GGNCC 3 cut(s) 369, 525, 697
AsuC2I CCSGG 3 cut(s) 528, 755, 777
AsuHPI GGTGA 1 cut(s) 581
AvaI CYCGRG 1 cut(s) 482
AvaII GGWCC 1 cut(s) 697
BanII GRGCYC 1 cut(s) 483
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 6 cut(s) 49, 120, 132, 148, 151, 154
BccI CCATC 1 cut(s) 878
BceAI ACGGC 5 cut(s) 149, 356, 708, 824, 825
BciT130I CCWGG 1 cut(s) 701
BciVI GTATCC 1 cut(s) 759
BcnI CCSGG 3 cut(s) 528, 755, 777
BcoDI GTCTC 2 cut(s) 482, 531
BfmI CTRYAG 1 cut(s) 134
BfuI GTATCC 1 cut(s) 759
BisI GCNGC 8 cut(s) 63, 134, 137, 140, 143, 146, 226, 813
BlsI GCNGC 8 cut(s) 64, 135, 138, 141, 144, 147, 227, 814
Bme1390I CCNGG 4 cut(s) 528, 701, 755, 777
Bme18I GGWCC 1 cut(s) 697
BmeT110I CYCGRG 1 cut(s) 482
BmgT120I GGNCC 3 cut(s) 369, 525, 697
BmiI GGNNCC 2 cut(s) 370, 642
BmrFI CCNGG 4 cut(s) 528, 701, 755, 777
BoxI GACNNNNGTC 2 cut(s) 413, 717
BpiI GAAGAC 1 cut(s) 11
BpuEI CTTGAG 1 cut(s) 168
BpuMI CCSGG 3 cut(s) 528, 755, 777
Bsa29I ATCGAT 1 cut(s) 300
BsaHI GRCGYC 1 cut(s) 36
BsaI GGTCTC 1 cut(s) 531
BsaJI CCNNGG 3 cut(s) 57, 165, 517
BsaWI WCCGGW 5 cut(s) 270, 540, 623, 653, 864
BsaXI ACNNNNNCTCC 2 cut(s) 659, 689
Bsc4I CCNNNNNNNGG 2 cut(s) 547, 871
Bse118I RCCGGY 4 cut(s) 540, 637, 653, 864
Bse1I ACTGG 1 cut(s) 589
BseBI CCWGG 1 cut(s) 701
BseCI ATCGAT 1 cut(s) 300
BseDI CCNNGG 3 cut(s) 57, 165, 517
BseLI CCNNNNNNNGG 2 cut(s) 547, 871
BseMII CTCAG 1 cut(s) 506
BseNI ACTGG 1 cut(s) 589
BseRI GAGGAG 3 cut(s) 500, 840, 847
BseXI GCAGC 6 cut(s) 49, 120, 132, 148, 151, 154
Bsh1236I CGCG 4 cut(s) 33, 440, 469, 716
Bsh1285I CGRYCG 2 cut(s) 414, 654
BshFI GGCC 3 cut(s) 337, 371, 526
BshTI ACCGGT 3 cut(s) 540, 653, 864
BshVI ATCGAT 1 cut(s) 300
BsiEI CGRYCG 2 cut(s) 414, 654
BsiHKCI CYCGRG 1 cut(s) 482
BsiWI CGTACG 1 cut(s) 66
BslI CCNNNNNNNGG 2 cut(s) 547, 871
BsmAI GTCTC 2 cut(s) 482, 531
BsnI GGCC 3 cut(s) 337, 371, 526
Bso31I GGTCTC 1 cut(s) 531
BsoBI CYCGRG 1 cut(s) 482
Bsp1286I GDGCHC 1 cut(s) 483
Bsp143I GATC 4 cut(s) 10, 273, 359, 411
BspANI GGCC 3 cut(s) 337, 371, 526
BspCNI CTCAG 1 cut(s) 505
BspDI ATCGAT 1 cut(s) 300
BspFNI CGCG 4 cut(s) 33, 440, 469, 716
BspLI GGNNCC 2 cut(s) 370, 642
BspMAI CTGCAG 1 cut(s) 138
BspPI GGATC 3 cut(s) 18, 281, 367
BspTNI GGTCTC 1 cut(s) 531
BsrFI RCCGGY 4 cut(s) 540, 637, 653, 864
BsrI ACTGG 1 cut(s) 589
BssAI RCCGGY 4 cut(s) 540, 637, 653, 864
BssECI CCNNGG 3 cut(s) 57, 165, 517
BssMI GATC 4 cut(s) 10, 273, 359, 411
BssNI GRCGYC 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 701
Bst4CI ACNGT 3 cut(s) 153, 262, 569
BstACI GRCGYC 1 cut(s) 36
BstAPI GCANNNNNTGC 1 cut(s) 145
BstC8I GCNNGC 2 cut(s) 318, 524
BstDEI CTNAG 2 cut(s) 405, 492
BstDSI CCRYGG 2 cut(s) 165, 517
BstFNI CGCG 4 cut(s) 33, 440, 469, 716
BstHHI GCGC 2 cut(s) 440, 471
BstKTI GATC 4 cut(s) 13, 276, 362, 414
BstMAI GTCTC 2 cut(s) 482, 531
BstMBI GATC 4 cut(s) 10, 273, 359, 411
BstMCI CGRYCG 2 cut(s) 414, 654
BstMWI GCNNNNNNNGC 3 cut(s) 139, 142, 145
BstNI CCWGG 1 cut(s) 701
BstPAI GACNNNNGTC 2 cut(s) 413, 717
BstSCI CCNGG 4 cut(s) 526, 699, 753, 775
BstSFI CTRYAG 1 cut(s) 134
BstUI CGCG 4 cut(s) 33, 440, 469, 716
BstV1I GCAGC 6 cut(s) 49, 120, 132, 148, 151, 154
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
Bsu15I ATCGAT 1 cut(s) 300
BsuI GTATCC 1 cut(s) 759
BsuRI GGCC 3 cut(s) 337, 371, 526
BsuTUI ATCGAT 1 cut(s) 300
BtgI CCRYGG 2 cut(s) 165, 517
Cac8I GCNNGC 2 cut(s) 318, 524
CaiI CAGNNNCTG 1 cut(s) 145
CfoI GCGC 2 cut(s) 440, 471
Cfr10I RCCGGY 4 cut(s) 540, 637, 653, 864
Cfr13I GGNCC 3 cut(s) 369, 525, 697
ClaI ATCGAT 1 cut(s) 300
CseI GACGC 4 cut(s) 44, 429, 493, 722
CsiI ACCWGGT 1 cut(s) 699
Csp6I GTAC 3 cut(s) 67, 295, 586
CspAI ACCGGT 3 cut(s) 540, 653, 864
CviAII CATG 4 cut(s) 222, 454, 553, 738
CviQI GTAC 3 cut(s) 67, 295, 586
DdeI CTNAG 2 cut(s) 405, 492
DpnI GATC 4 cut(s) 12, 275, 361, 413
DpnII GATC 4 cut(s) 10, 273, 359, 411
EaeI YGGCCR 1 cut(s) 335
EciI GGCGGA 6 cut(s) 100, 228, 380, 710, 758, 830
Eco130I CCWWGG 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 483
Eco31I GGTCTC 1 cut(s) 531
Eco47I GGWCC 1 cut(s) 697
Eco88I CYCGRG 1 cut(s) 482
EcoRII CCWGG 1 cut(s) 699
EcoT14I CCWWGG 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 483
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 4 cut(s) 225, 457, 556, 741
FatI CATG 4 cut(s) 221, 453, 552, 737
FauI CCCGC 1 cut(s) 709
FblI GTMKAC 2 cut(s) 155, 507
Fnu4HI GCNGC 8 cut(s) 63, 134, 137, 140, 143, 146, 226, 813
FriOI GRGCYC 1 cut(s) 483
Fsp4HI GCNGC 8 cut(s) 63, 134, 137, 140, 143, 146, 226, 813
GlaI GCGC 2 cut(s) 439, 470
GluI GCNGC 8 cut(s) 63, 134, 137, 140, 143, 146, 226, 813
HaeIII GGCC 3 cut(s) 337, 371, 526
HgaI GACGC 4 cut(s) 44, 429, 493, 722
HhaI GCGC 2 cut(s) 440, 471
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 4 cut(s) 225, 457, 556, 741
Hin6I GCGC 2 cut(s) 438, 469
HinP1I GCGC 2 cut(s) 438, 469
HincII GTYRAC 3 cut(s) 508, 565, 890
HindII GTYRAC 3 cut(s) 508, 565, 890
HpaI GTTAAC 1 cut(s) 565
HphI GGTGA 1 cut(s) 581
Hpy166II GTNNAC 4 cut(s) 156, 508, 565, 890
Hpy188I TCNGA 5 cut(s) 209, 495, 616, 765, 773
Hpy188III TCNNGA 7 cut(s) 49, 379, 424, 536, 649, 722, 797
Hpy8I GTNNAC 4 cut(s) 156, 508, 565, 890
Hpy99I CGWCG 6 cut(s) 18, 38, 419, 445, 509, 512
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 3 cut(s) 153, 262, 569
HpyCH4IV ACGT 3 cut(s) 69, 573, 603
HpyCH4V TGCA 2 cut(s) 136, 598
HpyF10VI GCNNNNNNNGC 3 cut(s) 139, 142, 145
HpyF3I CTNAG 2 cut(s) 405, 492
HpySE526I ACGT 3 cut(s) 69, 573, 603
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 4 cut(s) 225, 457, 556, 741
HspAI GCGC 2 cut(s) 438, 469
KspAI GTTAAC 1 cut(s) 565
Kzo9I GATC 4 cut(s) 10, 273, 359, 411
Lsp1109I GCAGC 6 cut(s) 49, 120, 132, 148, 151, 154
MabI ACCWGGT 1 cut(s) 699
MaeII ACGT 3 cut(s) 69, 573, 603
MaeIII GTNAC 7 cut(s) 101, 211, 569, 688, 719, 794, 916
MalI GATC 4 cut(s) 12, 275, 361, 413
MboI GATC 4 cut(s) 10, 273, 359, 411
MboII GAAGA 1 cut(s) 11
MflI RGATCY 1 cut(s) 273
MhlI GDGCHC 1 cut(s) 483
MluCI AATT 3 cut(s) 44, 245, 730
MlyI GAGTC 3 cut(s) 211, 405, 484
MmeI TCCRAC 1 cut(s) 796
MnlI CCTC 5 cut(s) 33, 192, 478, 818, 825
MroXI GAANNNNTTC 2 cut(s) 249, 848
MseI TTAA 6 cut(s) 279, 546, 564, 729, 861, 869
MspA1I CMGCKG 2 cut(s) 133, 145
MspR9I CCNGG 4 cut(s) 528, 701, 755, 777
MvaI CCWGG 1 cut(s) 701
MvnI CGCG 4 cut(s) 33, 440, 469, 716
MwoI GCNNNNNNNGC 3 cut(s) 139, 142, 145
NciI CCSGG 3 cut(s) 528, 755, 777
NdeII GATC 4 cut(s) 10, 273, 359, 411
NlaIII CATG 4 cut(s) 225, 457, 556, 741
NlaIV GGNNCC 2 cut(s) 370, 642
NmeAIII GCCGAG 2 cut(s) 414, 419
NmuCI GTSAC 4 cut(s) 569, 688, 719, 794
PaeR7I CTCGAG 1 cut(s) 482
PcsI WCGNNNNNNNCGW 2 cut(s) 720, 769
PdmI GAANNNNTTC 2 cut(s) 249, 848
PfeI GAWTC 7 cut(s) 250, 345, 382, 460, 496, 844, 905
Pfl23II CGTACG 1 cut(s) 66
PinAI ACCGGT 3 cut(s) 540, 653, 864
PkrI GCNGC 8 cut(s) 64, 135, 138, 141, 144, 147, 227, 814
Ple19I CGATCG 1 cut(s) 414
PleI GAGTC 3 cut(s) 211, 404, 484
PpsI GAGTC 3 cut(s) 211, 404, 484
PshAI GACNNNNGTC 2 cut(s) 413, 717
Psp6I CCWGG 1 cut(s) 699
PspGI CCWGG 1 cut(s) 699
PspLI CGTACG 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 370, 642
PspPI GGNCC 3 cut(s) 369, 525, 697
PspXI VCTCGAGB 1 cut(s) 482
PstI CTGCAG 1 cut(s) 138
PstNI CAGNNNCTG 1 cut(s) 145
PsuI RGATCY 1 cut(s) 273
PvuI CGATCG 1 cut(s) 414
PvuII CAGCTG 1 cut(s) 145
RsaI GTAC 3 cut(s) 68, 296, 587
RsaNI GTAC 3 cut(s) 67, 295, 586
SalI GTCGAC 1 cut(s) 506
SaqAI TTAA 6 cut(s) 279, 546, 564, 729, 861, 869
SatI GCNGC 8 cut(s) 63, 134, 137, 140, 143, 146, 226, 813
Sau3AI GATC 4 cut(s) 10, 273, 359, 411
Sau96I GGNCC 3 cut(s) 369, 525, 697
SchI GAGTC 3 cut(s) 211, 405, 484
ScrFI CCNGG 4 cut(s) 528, 701, 755, 777
SduI GDGCHC 1 cut(s) 483
SexAI ACCWGGT 1 cut(s) 699
SfcI CTRYAG 1 cut(s) 134
Sfr274I CTCGAG 1 cut(s) 482
SgrDI CGTCGACG 1 cut(s) 506
SinI GGWCC 1 cut(s) 697
SlaI CTCGAG 1 cut(s) 482
SmlI CTYRAG 2 cut(s) 183, 482
SmoI CTYRAG 2 cut(s) 183, 482
Sse9I AATT 3 cut(s) 44, 245, 730
StyD4I CCNGG 4 cut(s) 526, 699, 753, 775
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 3 cut(s) 153, 262, 569
TaiI ACGT 3 cut(s) 72, 576, 606
TaqI TCGA 9 cut(s) 198, 300, 378, 417, 483, 507, 535, 629, 650
TaqII GACCGA 1 cut(s) 898
TasI AATT 3 cut(s) 44, 245, 730
TauI GCSGC 2 cut(s) 228, 815
TfiI GAWTC 7 cut(s) 250, 345, 382, 460, 496, 844, 905
Tru1I TTAA 6 cut(s) 279, 546, 564, 729, 861, 869
Tru9I TTAA 6 cut(s) 279, 546, 564, 729, 861, 869
TseFI GTSAC 4 cut(s) 569, 688, 719, 794
TseI GCWGC 6 cut(s) 62, 133, 136, 139, 142, 145
Tsp45I GTSAC 4 cut(s) 569, 688, 719, 794
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 3 cut(s) 282, 297, 506
VpaK11BI GGWCC 1 cut(s) 697
XhoI CTCGAG 1 cut(s) 482
XmiI GTMKAC 2 cut(s) 155, 507
XmnI GAANNNNTTC 2 cut(s) 249, 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.