pycom07g15350

Methyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0016587
Physical Location & Seq
Reverse (-)
17647467 .. 17648402
936 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g15350.1

Sequence Viewer

Length: 936 bp
ATGCATCTACTAAAATCACCCACCGCCATGAGAGGAGACCATCCCCACCACCAAAAAATATTAAAGCTAGCCAAATCCATCGCCTACCTCCTCCTCCTCCTCATCTCCTTTACCCTAGGCTACCACTCCTCTTCTTCTCCCACCACCTCCTCCTCACCCCCCTCTTTTCCTCCTTCCGCCCCCATTCTCCACCAACTAGCAAGCCTCCCAACTAACCTCGACCACTTCCTACTCACCACTCACTGCTCTCCCCCACTCCCTCCTCACCTCATCCGCCAAACTCTCCTTGACCACCTTTTCAACTCCACCTCCCCCTTCACCAACTTCCCCCCTCCCCACGCCGCTCCTCTCCTCCGCCGTAGCCGCATCAAAGGCTGGGGCTCCAAAGGCGCCGTTTTCCAAAACCTCATCCAAAAACTCAAACCCCAAACCATCATCGAAGTTGGCACCTTCCTCGGCGCCTCAGCCATCCACATGGCGGAGTTAACCCACCAACTCGGCCTCAACACCACCCAAATCCTTTGCCTCGACGACTTCCGTGGCTGGCCTGGCTTCCGCGGTCGATTTAGCGACATCAGCCTCCTAAATGGCGACGTTCTTCTGCTTTACCAGTTCATGCAGAACGTCGTGTCAGTAAACGCCACGGAGTCGGTTTTGCCCGTCCCGTTTTCGACCGGGGCGGGGCTTGACTGGCTTTGCCAGATGGGCGTGTTTGGAGACTTAATCGAAGTGGATGCAGGTCATGATTTTATTTCAGCATGGTCCGATATTAACCGGGCCTACCGGATTTTACGTCCTGGCGGAATAATATTCGGGCATGATTATTTTACGGCGGCGGATAACAGAGGTGTAAGAAGGGCGGTAACTTTATTTGCTCGAGTTTATGGACTTAAGATTAAGTTTGATGGGCAGCATTGGGTCATTGACTCGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_24

Protein Analysis

312

Amino Acids

34.39

Weight (kDa)

9.19

Isoelectric Point (pI)

40.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_24 PF13578 146 - 275 6.3e-10 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016587)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01180
malus_domestica MD07G1156900.v1.1
prunus_persica Prupe.2G195400_v2.0.a1
pyrus_communis pycom07g15350
rosa_chinensis RchiOBHm_Chr1g0360821 RchiOBHm_Chr1g0360831
rosa_laevigata RLG00000027783
rosa_multiflora Rmu_ssc0000022.1_g000046
rosa_roxburghii Rroxscaffold_4G00295780
rosa_rugosa Rorug01G0281900
rosa_samantha Rh1AG293800 Rh1BG258600 Rh1DG288800
rosa_wichuraiana Rw1G026000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 728
AccB1I GGYRCC 3 cut(s) 389, 446, 458
AccBSI CCGCTC 1 cut(s) 344
AccII CGCG 1 cut(s) 558
AcyI GRCGYC 2 cut(s) 390, 459
AfiI CCNNNNNNNGG 2 cut(s) 478, 681
AflII CTTAAG 1 cut(s) 890
AgsI TTSAA 1 cut(s) 301
AjnI CCWGG 2 cut(s) 547, 796
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
Alw26I GTCTC 2 cut(s) 30, 711
Ama87I CYCGRG 2 cut(s) 876, 928
AoxI GGCC 3 cut(s) 499, 545, 777
ApeKI GCWGC 1 cut(s) 910
AspA2I CCTAGG 1 cut(s) 115
AspLEI GCGC 2 cut(s) 392, 461
AspS9I GGNCC 2 cut(s) 762, 777
AsuC2I CCSGG 2 cut(s) 676, 776
AsuHPI GGTGA 5 cut(s) 9, 147, 226, 257, 310
AsuNHI GCTAGC 1 cut(s) 67
AvaI CYCGRG 2 cut(s) 876, 928
AvaII GGWCC 1 cut(s) 762
AvrII CCTAGG 1 cut(s) 115
BanI GGYRCC 3 cut(s) 389, 446, 458
BanII GRGCYC 1 cut(s) 383
BbvCI CCTCAGC 1 cut(s) 463
BbvI GCAGC 1 cut(s) 922
BccI CCATC 6 cut(s) 48, 86, 440, 476, 697, 899
BceAI ACGGC 3 cut(s) 342, 377, 846
BcgI CGANNNNNNTGC 4 cut(s) 436, 470, 716, 750
BciT130I CCWGG 2 cut(s) 549, 798
BcnI CCSGG 2 cut(s) 676, 776
BcoDI GTCTC 2 cut(s) 30, 711
BfaI CTAG 3 cut(s) 68, 116, 197
BfoI RGCGCY 2 cut(s) 393, 462
BfrI CTTAAG 1 cut(s) 890
BfuAI ACCTGC 1 cut(s) 728
BglI GCCNNNNNGGC 1 cut(s) 705
BisI GCNGC 4 cut(s) 342, 364, 834, 911
BlnI CCTAGG 1 cut(s) 115
BlsI GCNGC 4 cut(s) 343, 365, 835, 912
Bme1390I CCNGG 4 cut(s) 549, 676, 776, 798
Bme18I GGWCC 1 cut(s) 762
BmeT110I CYCGRG 2 cut(s) 876, 928
BmgT120I GGNCC 2 cut(s) 762, 777
BmiI GGNNCC 4 cut(s) 382, 391, 448, 460
BmrFI CCNGG 4 cut(s) 549, 676, 776, 798
BmsI GCATC 3 cut(s) 13, 375, 724
BmtI GCTAGC 1 cut(s) 71
Bpu10I CCTNAGC 1 cut(s) 463
BpuMI CCSGG 2 cut(s) 676, 776
BsaHI GRCGYC 2 cut(s) 390, 459
BsaI GGTCTC 1 cut(s) 30
BsaJI CCNNGG 6 cut(s) 115, 454, 538, 556, 642, 675
BsaWI WCCGGW 1 cut(s) 783
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bsc4I CCNNNNNNNGG 2 cut(s) 478, 681
Bse1I ACTGG 2 cut(s) 610, 695
BseBI CCWGG 2 cut(s) 549, 798
BseDI CCNNGG 6 cut(s) 115, 454, 538, 556, 642, 675
BseGI GGATG 5 cut(s) 40, 270, 408, 468, 739
BseLI CCNNNNNNNGG 2 cut(s) 478, 681
BseMII CTCAG 1 cut(s) 477
BseNI ACTGG 2 cut(s) 610, 695
BseXI GCAGC 1 cut(s) 922
BseYI CCCAGC 1 cut(s) 375
Bsh1236I CGCG 1 cut(s) 558
Bsh1285I CGRYCG 2 cut(s) 562, 675
BshFI GGCC 3 cut(s) 501, 547, 779
BshNI GGYRCC 3 cut(s) 389, 446, 458
BsiEI CGRYCG 2 cut(s) 562, 675
BsiHKCI CYCGRG 2 cut(s) 876, 928
BsiSI CCGG 3 cut(s) 675, 775, 784
BslFI GGGAC 1 cut(s) 647
BslI CCNNNNNNNGG 2 cut(s) 478, 681
BsmAI GTCTC 2 cut(s) 30, 711
BsmFI GGGAC 1 cut(s) 647
BsnI GGCC 3 cut(s) 501, 547, 779
Bso31I GGTCTC 1 cut(s) 30
BsoBI CYCGRG 2 cut(s) 876, 928
Bsp1286I GDGCHC 1 cut(s) 383
BspANI GGCC 3 cut(s) 501, 547, 779
BspCNI CTCAG 1 cut(s) 476
BspFNI CGCG 1 cut(s) 558
BspHI TCATGA 1 cut(s) 742
BspLI GGNNCC 4 cut(s) 382, 391, 448, 460
BspMI ACCTGC 1 cut(s) 728
BspOI GCTAGC 1 cut(s) 71
BspT107I GGYRCC 3 cut(s) 389, 446, 458
BspTI CTTAAG 1 cut(s) 890
BspTNI GGTCTC 1 cut(s) 30
BsrBI CCGCTC 1 cut(s) 344
BsrI ACTGG 2 cut(s) 610, 695
BssECI CCNNGG 6 cut(s) 115, 454, 538, 556, 642, 675
BssNI GRCGYC 2 cut(s) 390, 459
BssT1I CCWWGG 1 cut(s) 115
Bst2UI CCWGG 2 cut(s) 549, 798
Bst6I CTCTTC 1 cut(s) 136
BstACI GRCGYC 2 cut(s) 390, 459
BstAFI CTTAAG 1 cut(s) 890
BstC8I GCNNGC 3 cut(s) 69, 202, 545
BstDEI CTNAG 1 cut(s) 463
BstDSI CCRYGG 3 cut(s) 538, 556, 642
BstF5I GGATG 5 cut(s) 40, 270, 408, 468, 739
BstFNI CGCG 1 cut(s) 558
BstH2I RGCGCY 2 cut(s) 393, 462
BstHHI GCGC 2 cut(s) 392, 461
BstMAI GTCTC 2 cut(s) 30, 711
BstMCI CGRYCG 2 cut(s) 562, 675
BstMWI GCNNNNNNNGC 7 cut(s) 363, 372, 387, 549, 576, 691, 705
BstNI CCWGG 2 cut(s) 549, 798
BstSCI CCNGG 4 cut(s) 547, 674, 774, 796
BstUI CGCG 1 cut(s) 558
BstV1I GCAGC 1 cut(s) 922
BstXI CCANNNNNNTGG 1 cut(s) 475
BsuRI GGCC 3 cut(s) 501, 547, 779
BtgI CCRYGG 3 cut(s) 538, 556, 642
BtgZI GCGATG 1 cut(s) 64
BtsCI GGATG 5 cut(s) 40, 270, 408, 468, 739
BtsI GCAGTG 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 241
BveI ACCTGC 1 cut(s) 728
Cac8I GCNNGC 3 cut(s) 69, 202, 545
CciI TCATGA 1 cut(s) 742
CfoI GCGC 2 cut(s) 392, 461
Cfr13I GGNCC 2 cut(s) 762, 777
Cfr42I CCGCGG 1 cut(s) 559
CviAII CATG 6 cut(s) 28, 475, 616, 743, 759, 818
DdeI CTNAG 1 cut(s) 463
DinI GGCGCC 2 cut(s) 391, 460
Eam1104I CTCTTC 1 cut(s) 136
EarI CTCTTC 1 cut(s) 136
EciI GGCGGA 6 cut(s) 166, 263, 344, 494, 816, 851
Eco130I CCWWGG 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 383
Eco31I GGTCTC 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 762
Eco88I CYCGRG 2 cut(s) 876, 928
EcoRII CCWGG 2 cut(s) 547, 796
EcoT14I CCWWGG 1 cut(s) 115
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 383
EgeI GGCGCC 2 cut(s) 391, 460
EheI GGCGCC 2 cut(s) 391, 460
ErhI CCWWGG 1 cut(s) 115
FaeI CATG 6 cut(s) 31, 478, 619, 746, 762, 821
FaiI YATR 7 cut(s) 29, 476, 617, 744, 760, 819, 885
FaqI GGGAC 1 cut(s) 647
FatI CATG 6 cut(s) 27, 474, 615, 742, 758, 817
FauI CCCGC 1 cut(s) 673
Fnu4HI GCNGC 4 cut(s) 342, 364, 834, 911
FokI GGATG 5 cut(s) 27, 257, 395, 455, 746
FriOI GRGCYC 1 cut(s) 383
Fsp4HI GCNGC 4 cut(s) 342, 364, 834, 911
FspBI CTAG 3 cut(s) 68, 116, 197
GlaI GCGC 2 cut(s) 391, 460
GluI GCNGC 4 cut(s) 342, 364, 834, 911
GsaI CCCAGC 1 cut(s) 379
HaeII RGCGCY 2 cut(s) 393, 462
HaeIII GGCC 3 cut(s) 501, 547, 779
HapII CCGG 3 cut(s) 675, 775, 784
HhaI GCGC 2 cut(s) 392, 461
Hin1I GRCGYC 2 cut(s) 390, 459
Hin1II CATG 6 cut(s) 31, 478, 619, 746, 762, 821
Hin6I GCGC 2 cut(s) 390, 459
HinP1I GCGC 2 cut(s) 390, 459
HincII GTYRAC 1 cut(s) 486
HindII GTYRAC 1 cut(s) 486
HinfI GANTC 2 cut(s) 647, 926
HpaI GTTAAC 1 cut(s) 486
HpaII CCGG 3 cut(s) 675, 775, 784
HphI GGTGA 5 cut(s) 9, 147, 226, 257, 310
Hpy166II GTNNAC 2 cut(s) 486, 637
Hpy188I TCNGA 1 cut(s) 766
Hpy188III TCNNGA 1 cut(s) 743
Hpy8I GTNNAC 2 cut(s) 486, 637
Hpy99I CGWCG 3 cut(s) 533, 596, 629
HpyAV CCTTC 4 cut(s) 183, 325, 460, 849
HpyCH4IV ACGT 3 cut(s) 594, 624, 793
HpyCH4V TGCA 3 cut(s) 4, 619, 737
HpyF10VI GCNNNNNNNGC 7 cut(s) 363, 372, 387, 549, 576, 691, 705
HpyF3I CTNAG 1 cut(s) 463
HpySE526I ACGT 3 cut(s) 594, 624, 793
Hsp92I GRCGYC 2 cut(s) 390, 459
Hsp92II CATG 6 cut(s) 31, 478, 619, 746, 762, 821
HspAI GCGC 2 cut(s) 390, 459
KasI GGCGCC 2 cut(s) 389, 458
KspAI GTTAAC 1 cut(s) 486
KspI CCGCGG 1 cut(s) 559
LmnI GCTCC 2 cut(s) 349, 386
Lsp1109I GCAGC 1 cut(s) 922
LweI GCATC 3 cut(s) 13, 375, 724
MaeI CTAG 3 cut(s) 68, 116, 197
MaeII ACGT 3 cut(s) 594, 624, 793
MaeIII GTNAC 1 cut(s) 862
MbiI CCGCTC 1 cut(s) 344
MboII GAAGA 3 cut(s) 123, 126, 590
MhlI GDGCHC 1 cut(s) 383
Mly113I GGCGCC 2 cut(s) 390, 459
MlyI GAGTC 2 cut(s) 656, 920
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 7 cut(s) 62, 485, 722, 771, 891, 897, 934
MslI CAYNNNNRTG 2 cut(s) 26, 473
MspA1I CMGCKG 1 cut(s) 558
MspCI CTTAAG 1 cut(s) 890
MspI CCGG 3 cut(s) 675, 775, 784
MspR9I CCNGG 4 cut(s) 549, 676, 776, 798
MvaI CCWGG 2 cut(s) 549, 798
MvnI CGCG 1 cut(s) 558
MwoI GCNNNNNNNGC 7 cut(s) 363, 372, 387, 549, 576, 691, 705
NarI GGCGCC 2 cut(s) 390, 459
NciI CCSGG 2 cut(s) 676, 776
NheI GCTAGC 1 cut(s) 67
NlaIII CATG 6 cut(s) 31, 478, 619, 746, 762, 821
NlaIV GGNNCC 4 cut(s) 382, 391, 448, 460
NmeAIII GCCGAG 2 cut(s) 435, 477
NsiI ATGCAT 1 cut(s) 6
PaeR7I CTCGAG 2 cut(s) 876, 928
PagI TCATGA 1 cut(s) 742
PkrI GCNGC 4 cut(s) 343, 365, 835, 912
PleI GAGTC 2 cut(s) 655, 920
PluTI GGCGCC 2 cut(s) 393, 462
PpsI GAGTC 2 cut(s) 655, 920
Psp6I CCWGG 2 cut(s) 547, 796
PspFI CCCAGC 1 cut(s) 375
PspGI CCWGG 2 cut(s) 547, 796
PspN4I GGNNCC 4 cut(s) 382, 391, 448, 460
PspPI GGNCC 2 cut(s) 762, 777
PspXI VCTCGAGB 2 cut(s) 876, 928
RseI CAYNNNNRTG 2 cut(s) 26, 473
SacII CCGCGG 1 cut(s) 559
SaqAI TTAA 7 cut(s) 62, 485, 722, 771, 891, 897, 934
SatI GCNGC 4 cut(s) 342, 364, 834, 911
Sau96I GGNCC 2 cut(s) 762, 777
SchI GAGTC 2 cut(s) 656, 920
ScrFI CCNGG 4 cut(s) 549, 676, 776, 798
SduI GDGCHC 1 cut(s) 383
SfaNI GCATC 3 cut(s) 13, 375, 724
SfoI GGCGCC 2 cut(s) 391, 460
Sfr274I CTCGAG 2 cut(s) 876, 928
Sfr303I CCGCGG 1 cut(s) 559
SgrBI CCGCGG 1 cut(s) 559
SinI GGWCC 1 cut(s) 762
SlaI CTCGAG 2 cut(s) 876, 928
SmiMI CAYNNNNRTG 2 cut(s) 26, 473
SmlI CTYRAG 3 cut(s) 876, 890, 928
SmoI CTYRAG 3 cut(s) 876, 890, 928
SspDI GGCGCC 2 cut(s) 389, 458
SspI AATATT 2 cut(s) 60, 810
SspMI CTAG 3 cut(s) 68, 116, 197
StyD4I CCNGG 4 cut(s) 547, 674, 774, 796
StyI CCWWGG 1 cut(s) 115
TaiI ACGT 3 cut(s) 597, 627, 796
TaqI TCGA 8 cut(s) 219, 438, 528, 562, 671, 726, 877, 929
TauI GCSGC 3 cut(s) 344, 366, 836
Tru1I TTAA 7 cut(s) 62, 485, 722, 771, 891, 897, 934
Tru9I TTAA 7 cut(s) 62, 485, 722, 771, 891, 897, 934
TscAI CASTG 1 cut(s) 248
TseI GCWGC 1 cut(s) 910
TspDTI ATGAA 1 cut(s) 604
TspGWI ACGGA 2 cut(s) 527, 659
TspRI CASTG 1 cut(s) 248
Vha464I CTTAAG 1 cut(s) 890
VpaK11BI GGWCC 1 cut(s) 762
XhoI CTCGAG 2 cut(s) 876, 928
XmaJI CCTAGG 1 cut(s) 115
XspI CTAG 3 cut(s) 68, 116, 197
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.