Rw1G026000

Methyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0016587
Physical Location & Seq
Reverse (-)
52927410 .. 52930159
2750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G026000.1

Sequence Viewer

Length: 948 bp
ATGGCAATAAGCATGCAATCCAAGCTATCTGAAACCACCATGAAAGAAGACCAAAAGAAATACACAGCTTTACTGAAACTAGCAAAACCCTTGGTCTTTGTCATCCTCCTCCTCTTCACCTACACCTTAGGCTACCTCTCTTCTCCTCTAACCCCCTCCCCGACGTCACCCTCACCACCCTCTTCTTCAGCCCCCTCGCTTCTTCAACTGGCCAACCTCCCCACCCAACTCGACCACTTCCGAGTCACAACTCACTGCGCCGACCCGGTCCCTTCCCAACTCGTCCGCCAAACCATTCTCGACCTAGCCTTCAACTCCACCTCGCCTTTCACCAACTTCCCCCCTCCCCACGTCAAAAGCCTCCTACGTACCAATCGTGCCAAGGGATTGGGCCCAAACGGCGCCGTTTTCGAGCACCTAATCGAAATGGTCAAGCCCCGGACCATCATCGAAGTGGGCACGTTTCTTGGAGCATCCGCTATCCACATGGTCGACTTGACCCGCAAGCTCGGGCTCCAAACCCAAATCCTATGTGTCGATGACTTTCGGGGATGGCCCGGGTTTAGAGAACGGTTCAAGGACATAAAGATGCTAAACGGCGACGTTTTTTTGATGTACCAATTCATGCAAAATATCGTATCCGCCAACGCGACGGAGTCGGTTTTACCCGTACCGTTTTCAACCGGGTCGGTACTTGATAAGCTTTGTGAGTGGGGTATTTTTGGTGATTTGATAGAAGTGGATGCGGGTTATGATTTTAATTCGGCTTGGTCGGATATCAACCGGGCTTATCGGATCCTAAAACCCGGTGGGGTGCTTTTCGGGCACAATTATTTCACCGCGGCTGATGATAGAGGGGTAAGAAGGGCGGTAACTTTATTTGCTAGGGTTTATGGGCTCAAAATTAAACTTGAAAGGCAGCATTGGGTCATTCACTCGGGTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_24

Protein Analysis

315

Amino Acids

35.15

Weight (kDa)

9.17

Isoelectric Point (pI)

34.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_24 PF13578 150 - 278 1.1e-08 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016587)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01180
malus_domestica MD07G1156900.v1.1
prunus_persica Prupe.2G195400_v2.0.a1
pyrus_communis pycom07g15350
rosa_chinensis RchiOBHm_Chr1g0360821 RchiOBHm_Chr1g0360831
rosa_laevigata RLG00000027783
rosa_multiflora Rmu_ssc0000022.1_g000046
rosa_roxburghii Rroxscaffold_4G00295780
rosa_rugosa Rorug01G0281900
rosa_samantha Rh1AG293800 Rh1BG258600 Rh1DG288800
rosa_wichuraiana Rw1G026000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 167
AccB1I GGYRCC 1 cut(s) 401
AccI GTMKAC 1 cut(s) 492
AccII CGCG 2 cut(s) 650, 842
AciI CCGC 8 cut(s) 286, 477, 502, 642, 746, 840, 842, 869
AclWI GGATC 2 cut(s) 790, 803
AcoI YGGCCR 1 cut(s) 210
AcuI CTGAAG 1 cut(s) 171
AcyI GRCGYC 2 cut(s) 164, 402
AfaI GTAC 4 cut(s) 370, 617, 672, 693
AgsI TTSAA 5 cut(s) 206, 313, 577, 681, 914
AjiI CACGTC 1 cut(s) 352
AluBI AGCT 4 cut(s) 25, 68, 508, 703
AluI AGCT 4 cut(s) 25, 68, 508, 703
Alw21I GWGCWC 1 cut(s) 417
AlwI GGATC 2 cut(s) 790, 803
Ama87I CYCGRG 3 cut(s) 509, 557, 937
AoxI GGCC 3 cut(s) 210, 391, 554
ApaI GGGCCC 1 cut(s) 395
ApeKI GCWGC 1 cut(s) 919
AspLEI GCGC 2 cut(s) 260, 404
AspS9I GGNCC 5 cut(s) 268, 391, 392, 441, 555
AsuC2I CCSGG 7 cut(s) 266, 439, 558, 559, 685, 785, 807
AsuHPI GGTGA 6 cut(s) 109, 159, 165, 322, 737, 829
AvaI CYCGRG 3 cut(s) 509, 557, 937
AvaII GGWCC 2 cut(s) 268, 441
AxyI CCTNAGG 1 cut(s) 127
BaeGI GKGCMC 3 cut(s) 395, 461, 828
BalI TGGCCA 1 cut(s) 212
BamHI GGATCC 1 cut(s) 795
BanI GGYRCC 1 cut(s) 401
BanII GRGCYC 3 cut(s) 395, 516, 900
BbsI GAAGAC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 417
BbvI GCAGC 1 cut(s) 931
BccI CCATC 2 cut(s) 452, 546
BceAI ACGGC 3 cut(s) 389, 415, 613
BciVI GTATCC 1 cut(s) 649
BcnI CCSGG 7 cut(s) 266, 439, 558, 559, 685, 785, 807
BfaI CTAG 3 cut(s) 80, 305, 885
BfoI RGCGCY 1 cut(s) 405
BfuI GTATCC 1 cut(s) 649
BglI GCCNNNNNGGC 1 cut(s) 399
BisI GCNGC 2 cut(s) 843, 920
BlsI GCNGC 2 cut(s) 844, 921
Bme1390I CCNGG 7 cut(s) 266, 439, 558, 559, 685, 785, 807
Bme18I GGWCC 2 cut(s) 268, 441
BmeT110I CYCGRG 3 cut(s) 509, 557, 937
BmgBI CACGTC 1 cut(s) 352
BmgT120I GGNCC 5 cut(s) 268, 391, 392, 441, 555
BmiI GGNNCC 5 cut(s) 270, 393, 403, 515, 797
BmrFI CCNGG 7 cut(s) 266, 439, 558, 559, 685, 785, 807
BmsI GCATC 3 cut(s) 482, 579, 733
BpiI GAAGAC 1 cut(s) 54
BpuMI CCSGG 7 cut(s) 266, 439, 558, 559, 685, 785, 807
BsaAI YACGTR 1 cut(s) 368
BsaHI GRCGYC 2 cut(s) 164, 402
BsaJI CCNNGG 5 cut(s) 90, 381, 437, 557, 840
Bse1I ACTGG 1 cut(s) 213
Bse21I CCTNAGG 1 cut(s) 127
BseDI CCNNGG 5 cut(s) 90, 381, 437, 557, 840
BseGI GGATG 4 cut(s) 102, 473, 557, 748
BseNI ACTGG 1 cut(s) 213
BseRI GAGGAG 3 cut(s) 98, 101, 135
BseSI GKGCMC 3 cut(s) 395, 461, 828
BseXI GCAGC 1 cut(s) 931
Bsh1236I CGCG 2 cut(s) 650, 842
BshFI GGCC 3 cut(s) 212, 393, 556
BshNI GGYRCC 1 cut(s) 401
BsiHKAI GWGCWC 1 cut(s) 417
BsiHKCI CYCGRG 3 cut(s) 509, 557, 937
BsiSI CCGG 6 cut(s) 266, 439, 558, 684, 784, 807
BslFI GGGAC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 254
BsnI GGCC 3 cut(s) 212, 393, 556
BsoBI CYCGRG 3 cut(s) 509, 557, 937
Bsp120I GGGCCC 1 cut(s) 391
Bsp1286I GDGCHC 6 cut(s) 395, 417, 461, 516, 828, 900
Bsp143I GATC 1 cut(s) 795
BspACI CCGC 8 cut(s) 286, 477, 502, 642, 746, 840, 842, 869
BspANI GGCC 3 cut(s) 212, 393, 556
BspFNI CGCG 2 cut(s) 650, 842
BspLI GGNNCC 5 cut(s) 270, 393, 403, 515, 797
BspPI GGATC 2 cut(s) 790, 803
BspT107I GGYRCC 1 cut(s) 401
BsrI ACTGG 1 cut(s) 213
BssECI CCNNGG 5 cut(s) 90, 381, 437, 557, 840
BssMI GATC 1 cut(s) 795
BssNI GRCGYC 2 cut(s) 164, 402
BssT1I CCWWGG 2 cut(s) 90, 381
Bst4CI ACNGT 2 cut(s) 573, 675
Bst6I CTCTTC 3 cut(s) 119, 145, 187
BstACI GRCGYC 2 cut(s) 164, 402
BstBAI YACGTR 1 cut(s) 368
BstC8I GCNNGC 2 cut(s) 14, 506
BstDEI CTNAG 1 cut(s) 127
BstDSI CCRYGG 1 cut(s) 840
BstF5I GGATG 4 cut(s) 102, 473, 557, 748
BstFNI CGCG 2 cut(s) 650, 842
BstH2I RGCGCY 1 cut(s) 405
BstHHI GCGC 2 cut(s) 260, 404
BstKTI GATC 1 cut(s) 798
BstMBI GATC 1 cut(s) 795
BstMWI GCNNNNNNNGC 3 cut(s) 22, 399, 823
BstNSI RCATGY 1 cut(s) 16
BstSCI CCNGG 7 cut(s) 264, 437, 556, 557, 683, 783, 805
BstSLI GKGCMC 3 cut(s) 395, 461, 828
BstSNI TACGTA 1 cut(s) 368
BstUI CGCG 2 cut(s) 650, 842
BstV1I GCAGC 1 cut(s) 931
BstV2I GAAGAC 1 cut(s) 54
BstX2I RGATCY 1 cut(s) 795
BstXI CCANNNNNNTGG 1 cut(s) 388
BstYI RGATCY 1 cut(s) 795
Bsu36I CCTNAGG 1 cut(s) 127
BsuI GTATCC 1 cut(s) 649
BsuRI GGCC 3 cut(s) 212, 393, 556
BtgI CCRYGG 1 cut(s) 840
BtrI CACGTC 1 cut(s) 352
BtsCI GGATG 4 cut(s) 102, 473, 557, 748
BtsI GCAGTG 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 253
Cac8I GCNNGC 2 cut(s) 14, 506
CfoI GCGC 2 cut(s) 260, 404
Cfr13I GGNCC 5 cut(s) 268, 391, 392, 441, 555
Cfr42I CCGCGG 1 cut(s) 843
Cfr9I CCCGGG 1 cut(s) 557
Csp6I GTAC 4 cut(s) 369, 616, 671, 692
CviAII CATG 4 cut(s) 13, 40, 487, 625
CviQI GTAC 4 cut(s) 369, 616, 671, 692
DdeI CTNAG 1 cut(s) 127
DinI GGCGCC 1 cut(s) 403
DpnI GATC 1 cut(s) 797
DpnII GATC 1 cut(s) 795
EaeI YGGCCR 1 cut(s) 210
Eam1104I CTCTTC 3 cut(s) 119, 145, 187
EarI CTCTTC 3 cut(s) 119, 145, 187
EciI GGCGGA 2 cut(s) 275, 631
Eco105I TACGTA 1 cut(s) 368
Eco130I CCWWGG 2 cut(s) 90, 381
Eco24I GRGCYC 3 cut(s) 395, 516, 900
Eco32I GATATC 1 cut(s) 778
Eco47I GGWCC 2 cut(s) 268, 441
Eco57I CTGAAG 1 cut(s) 171
Eco81I CCTNAGG 1 cut(s) 127
Eco88I CYCGRG 3 cut(s) 509, 557, 937
EcoRV GATATC 1 cut(s) 778
EcoT14I CCWWGG 2 cut(s) 90, 381
EcoT38I GRGCYC 3 cut(s) 395, 516, 900
EgeI GGCGCC 1 cut(s) 403
EheI GGCGCC 1 cut(s) 403
ErhI CCWWGG 2 cut(s) 90, 381
FaeI CATG 4 cut(s) 16, 43, 490, 628
FaiI YATR 8 cut(s) 14, 41, 488, 532, 584, 626, 753, 894
FaqI GGGAC 1 cut(s) 254
FatI CATG 4 cut(s) 12, 39, 486, 624
FauI CCCGC 2 cut(s) 509, 739
FblI GTMKAC 1 cut(s) 492
Fnu4HI GCNGC 2 cut(s) 843, 920
FokI GGATG 4 cut(s) 89, 460, 564, 755
FriOI GRGCYC 3 cut(s) 395, 516, 900
Fsp4HI GCNGC 2 cut(s) 843, 920
FspBI CTAG 3 cut(s) 80, 305, 885
GlaI GCGC 2 cut(s) 259, 403
GluI GCNGC 2 cut(s) 843, 920
HaeII RGCGCY 1 cut(s) 405
HaeIII GGCC 3 cut(s) 212, 393, 556
HapII CCGG 6 cut(s) 266, 439, 558, 684, 784, 807
HhaI GCGC 2 cut(s) 260, 404
Hin1I GRCGYC 2 cut(s) 164, 402
Hin1II CATG 4 cut(s) 16, 43, 490, 628
Hin6I GCGC 2 cut(s) 258, 402
HinP1I GCGC 2 cut(s) 258, 402
HincII GTYRAC 1 cut(s) 493
HindII GTYRAC 1 cut(s) 493
HindIII AAGCTT 1 cut(s) 701
HinfI GANTC 2 cut(s) 243, 656
HpaII CCGG 6 cut(s) 266, 439, 558, 684, 784, 807
HphI GGTGA 6 cut(s) 109, 159, 165, 322, 737, 829
Hpy166II GTNNAC 1 cut(s) 493
Hpy188I TCNGA 4 cut(s) 31, 242, 775, 795
Hpy188III TCNNGA 1 cut(s) 299
Hpy8I GTNNAC 1 cut(s) 493
Hpy99I CGWCG 3 cut(s) 166, 605, 655
HpyAV CCTTC 3 cut(s) 282, 319, 858
HpyCH4III ACNGT 2 cut(s) 573, 675
HpyCH4IV ACGT 5 cut(s) 164, 351, 367, 461, 603
HpyCH4V TGCA 2 cut(s) 16, 628
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 399, 823
HpyF3I CTNAG 1 cut(s) 127
HpySE526I ACGT 5 cut(s) 164, 351, 367, 461, 603
Hsp92I GRCGYC 2 cut(s) 164, 402
Hsp92II CATG 4 cut(s) 16, 43, 490, 628
HspAI GCGC 2 cut(s) 258, 402
KasI GGCGCC 1 cut(s) 401
KspI CCGCGG 1 cut(s) 843
Kzo9I GATC 1 cut(s) 795
LmnI GCTCC 2 cut(s) 470, 519
LpnPI CCDG 7 cut(s) 194, 279, 452, 571, 697, 797, 820
Lsp1109I GCAGC 1 cut(s) 931
LweI GCATC 3 cut(s) 482, 579, 733
MaeI CTAG 3 cut(s) 80, 305, 885
MaeII ACGT 5 cut(s) 164, 351, 367, 461, 603
MaeIII GTNAC 3 cut(s) 165, 244, 871
MalI GATC 1 cut(s) 797
MboI GATC 1 cut(s) 795
MboII GAAGA 6 cut(s) 59, 106, 132, 174, 177, 194
MflI RGATCY 1 cut(s) 795
MhlI GDGCHC 6 cut(s) 395, 417, 461, 516, 828, 900
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 4 cut(s) 620, 760, 829, 903
MluNI TGGCCA 1 cut(s) 212
Mly113I GGCGCC 1 cut(s) 402
MlyI GAGTC 2 cut(s) 252, 665
MmeI TCCRAC 1 cut(s) 753
Mox20I TGGCCA 1 cut(s) 212
MscI TGGCCA 1 cut(s) 212
MseI TTAA 2 cut(s) 759, 906
MslI CAYNNNNRTG 2 cut(s) 452, 587
Msp20I TGGCCA 1 cut(s) 212
MspA1I CMGCKG 1 cut(s) 842
MspI CCGG 6 cut(s) 266, 439, 558, 684, 784, 807
MspR9I CCNGG 7 cut(s) 266, 439, 558, 559, 685, 785, 807
MvnI CGCG 2 cut(s) 650, 842
MwoI GCNNNNNNNGC 3 cut(s) 22, 399, 823
NarI GGCGCC 1 cut(s) 402
NciI CCSGG 7 cut(s) 266, 439, 558, 559, 685, 785, 807
NdeII GATC 1 cut(s) 795
NlaIII CATG 4 cut(s) 16, 43, 490, 628
NlaIV GGNNCC 5 cut(s) 270, 393, 403, 515, 797
NmuCI GTSAC 2 cut(s) 165, 244
NspI RCATGY 1 cut(s) 16
PaeI GCATGC 1 cut(s) 16
PcsI WCGNNNNNNNCGW 1 cut(s) 373
PflFI GACNNNGTC 2 cut(s) 266, 655
PkrI GCNGC 2 cut(s) 844, 921
PleI GAGTC 2 cut(s) 251, 664
PluTI GGCGCC 1 cut(s) 405
PpsI GAGTC 2 cut(s) 251, 664
Ppu21I YACGTR 1 cut(s) 368
PspN4I GGNNCC 5 cut(s) 270, 393, 403, 515, 797
PspOMI GGGCCC 1 cut(s) 391
PspPI GGNCC 5 cut(s) 268, 391, 392, 441, 555
PsuI RGATCY 1 cut(s) 795
PsyI GACNNNGTC 2 cut(s) 266, 655
RsaI GTAC 4 cut(s) 370, 617, 672, 693
RsaNI GTAC 4 cut(s) 369, 616, 671, 692
RseI CAYNNNNRTG 2 cut(s) 452, 587
SacII CCGCGG 1 cut(s) 843
SalI GTCGAC 1 cut(s) 491
SaqAI TTAA 2 cut(s) 759, 906
SatI GCNGC 2 cut(s) 843, 920
Sau3AI GATC 1 cut(s) 795
Sau96I GGNCC 5 cut(s) 268, 391, 392, 441, 555
SchI GAGTC 2 cut(s) 252, 665
ScrFI CCNGG 7 cut(s) 266, 439, 558, 559, 685, 785, 807
SduI GDGCHC 6 cut(s) 395, 417, 461, 516, 828, 900
SfaNI GCATC 3 cut(s) 482, 579, 733
SfoI GGCGCC 1 cut(s) 403
Sfr303I CCGCGG 1 cut(s) 843
SgrBI CCGCGG 1 cut(s) 843
SinI GGWCC 2 cut(s) 268, 441
SmaI CCCGGG 1 cut(s) 559
SmiMI CAYNNNNRTG 2 cut(s) 452, 587
SnaBI TACGTA 1 cut(s) 368
SphI GCATGC 1 cut(s) 16
Sse9I AATT 4 cut(s) 620, 760, 829, 903
SsiI CCGC 8 cut(s) 286, 477, 502, 642, 746, 840, 842, 869
SspDI GGCGCC 1 cut(s) 401
SspMI CTAG 3 cut(s) 80, 305, 885
StyD4I CCNGG 7 cut(s) 264, 437, 556, 557, 683, 783, 805
StyI CCWWGG 2 cut(s) 90, 381
TaaI ACNGT 2 cut(s) 573, 675
TaiI ACGT 5 cut(s) 167, 354, 370, 464, 606
TaqI TCGA 7 cut(s) 231, 300, 411, 423, 450, 492, 537
TasI AATT 4 cut(s) 620, 760, 829, 903
TauI GCSGC 1 cut(s) 845
Tru1I TTAA 2 cut(s) 759, 906
Tru9I TTAA 2 cut(s) 759, 906
TscAI CASTG 1 cut(s) 260
TseFI GTSAC 2 cut(s) 165, 244
TseI GCWGC 1 cut(s) 919
Tsp45I GTSAC 2 cut(s) 165, 244
TspDTI ATGAA 2 cut(s) 56, 613
TspGWI ACGGA 1 cut(s) 668
TspMI CCCGGG 1 cut(s) 557
TspRI CASTG 1 cut(s) 260
Tth111I GACNNNGTC 2 cut(s) 266, 655
VpaK11BI GGWCC 2 cut(s) 268, 441
XceI RCATGY 1 cut(s) 16
XcmI CCANNNNNNNNNTGG 1 cut(s) 451
XmaI CCCGGG 1 cut(s) 557
XmiI GTMKAC 1 cut(s) 492
XspI CTAG 3 cut(s) 80, 305, 885
ZraI GACGTC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.