RchiOBHm_Chr1g0360831

Methyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016587
Physical Location & Seq
Reverse (-)
52711302 .. 52711874
573 bp
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UTR
Exon/CDS
Intron
PRQ58577

Sequence Viewer

Length: 573 bp
ATGAAAGAAGACCAGAAGAAACACACAGCTTTACTGAAACTAGCAAAACCCTTGGTCTTTGTCATCCTCCTCCTCTTCACCTACACCTTAGGCTACCTCTCTTCTCCTCTAACCCCCTCCCCGACGTCACCCTCACCACCCTCTTCTTCAGCCCAATCGCTTCTTCAACTGGCCAACCTCCCCACCCAACTCGACCACTTCCGAGTCACAACTCACTGCGCCGACCCGGTCCCTTCCCAACTCGTCCGCCAAACCATTCTCGACCAAGCCTTCAACTCCACCTCGCCTTTCACCAACTTCCCTCCTCCCCACGTCAAAAGCCTCCTACGTACCAATCGTGCCAAGGGATTGGGCCCAAACGGCGCCGTTTTCGAGCACCTAATCGAAATGGTCAAGCCCCGGACCATCATCGAAGTGGGCACGTTTCTTGGAGCATCCGCTATCCACATGGTCGACTTGACCCGCAAGCTCGGGCTCCAAACCCAAATCCTATGTGTGGATGACTTTCGGGGATGGCCCGGGTTTAGAGAACGGTTCAAGGACTTAAAGATGCTAAACGGCGACGTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_24

Protein Analysis

190

Amino Acids

21.1

Weight (kDa)

9.55

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016587)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01180
malus_domestica MD07G1156900.v1.1
prunus_persica Prupe.2G195400_v2.0.a1
pyrus_communis pycom07g15350
rosa_chinensis RchiOBHm_Chr1g0360821 RchiOBHm_Chr1g0360831
rosa_laevigata RLG00000027783
rosa_multiflora Rmu_ssc0000022.1_g000046
rosa_roxburghii Rroxscaffold_4G00295780
rosa_rugosa Rorug01G0281900
rosa_samantha Rh1AG293800 Rh1BG258600 Rh1DG288800
rosa_wichuraiana Rw1G026000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 362
AccI GTMKAC 1 cut(s) 453
AciI CCGC 3 cut(s) 247, 438, 463
AcoI YGGCCR 1 cut(s) 171
AcuI CTGAAG 1 cut(s) 132
AcyI GRCGYC 2 cut(s) 125, 363
AfaI GTAC 1 cut(s) 331
AfiI CCNNNNNNNGG 1 cut(s) 496
AgsI TTSAA 3 cut(s) 167, 274, 538
AjiI CACGTC 1 cut(s) 313
AjuI GAANNNNNNNTTGG 2 cut(s) 147, 179
AluBI AGCT 2 cut(s) 29, 469
AluI AGCT 2 cut(s) 29, 469
Alw21I GWGCWC 1 cut(s) 378
Ama87I CYCGRG 2 cut(s) 470, 518
AoxI GGCC 3 cut(s) 171, 352, 515
ApaI GGGCCC 1 cut(s) 356
AspLEI GCGC 2 cut(s) 221, 365
AspS9I GGNCC 5 cut(s) 229, 352, 353, 402, 516
AsuC2I CCSGG 4 cut(s) 227, 400, 519, 520
AsuHPI GGTGA 4 cut(s) 70, 120, 126, 283
AvaI CYCGRG 2 cut(s) 470, 518
AvaII GGWCC 2 cut(s) 229, 402
AxyI CCTNAGG 1 cut(s) 88
BaeGI GKGCMC 2 cut(s) 356, 422
BalI TGGCCA 1 cut(s) 173
BanI GGYRCC 1 cut(s) 362
BanII GRGCYC 2 cut(s) 356, 477
BbsI GAAGAC 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 378
BccI CCATC 2 cut(s) 413, 507
BceAI ACGGC 2 cut(s) 350, 376
BcnI CCSGG 4 cut(s) 227, 400, 519, 520
BfaI CTAG 1 cut(s) 41
BfoI RGCGCY 1 cut(s) 366
BglI GCCNNNNNGGC 1 cut(s) 360
Bme1390I CCNGG 4 cut(s) 227, 400, 519, 520
Bme18I GGWCC 2 cut(s) 229, 402
BmeT110I CYCGRG 2 cut(s) 470, 518
BmgBI CACGTC 1 cut(s) 313
BmgT120I GGNCC 5 cut(s) 229, 352, 353, 402, 516
BmiI GGNNCC 4 cut(s) 231, 354, 364, 476
BmrFI CCNGG 4 cut(s) 227, 400, 519, 520
BmsI GCATC 2 cut(s) 443, 540
BpiI GAAGAC 1 cut(s) 15
BpuMI CCSGG 4 cut(s) 227, 400, 519, 520
BsaAI YACGTR 1 cut(s) 329
BsaHI GRCGYC 2 cut(s) 125, 363
BsaJI CCNNGG 4 cut(s) 51, 342, 398, 518
Bsc4I CCNNNNNNNGG 1 cut(s) 496
Bse1I ACTGG 1 cut(s) 174
Bse21I CCTNAGG 1 cut(s) 88
BseDI CCNNGG 4 cut(s) 51, 342, 398, 518
BseGI GGATG 4 cut(s) 63, 434, 505, 518
BseLI CCNNNNNNNGG 1 cut(s) 496
BseNI ACTGG 1 cut(s) 174
BseRI GAGGAG 4 cut(s) 59, 62, 96, 294
BseSI GKGCMC 2 cut(s) 356, 422
BshFI GGCC 3 cut(s) 173, 354, 517
BshNI GGYRCC 1 cut(s) 362
BsiHKAI GWGCWC 1 cut(s) 378
BsiHKCI CYCGRG 2 cut(s) 470, 518
BsiSI CCGG 3 cut(s) 227, 400, 519
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 1 cut(s) 496
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 3 cut(s) 173, 354, 517
BsoBI CYCGRG 2 cut(s) 470, 518
Bsp120I GGGCCC 1 cut(s) 352
Bsp1286I GDGCHC 4 cut(s) 356, 378, 422, 477
BspACI CCGC 3 cut(s) 247, 438, 463
BspANI GGCC 3 cut(s) 173, 354, 517
BspLI GGNNCC 4 cut(s) 231, 354, 364, 476
BspT107I GGYRCC 1 cut(s) 362
BsrI ACTGG 1 cut(s) 174
BssECI CCNNGG 4 cut(s) 51, 342, 398, 518
BssNI GRCGYC 2 cut(s) 125, 363
BssT1I CCWWGG 2 cut(s) 51, 342
Bst4CI ACNGT 1 cut(s) 534
Bst6I CTCTTC 3 cut(s) 80, 106, 148
BstACI GRCGYC 2 cut(s) 125, 363
BstBAI YACGTR 1 cut(s) 329
BstC8I GCNNGC 1 cut(s) 467
BstDEI CTNAG 1 cut(s) 88
BstF5I GGATG 4 cut(s) 63, 434, 505, 518
BstH2I RGCGCY 1 cut(s) 366
BstHHI GCGC 2 cut(s) 221, 365
BstMWI GCNNNNNNNGC 1 cut(s) 360
BstSCI CCNGG 4 cut(s) 225, 398, 517, 518
BstSLI GKGCMC 2 cut(s) 356, 422
BstSNI TACGTA 1 cut(s) 329
BstV2I GAAGAC 1 cut(s) 15
BstXI CCANNNNNNTGG 1 cut(s) 349
Bsu36I CCTNAGG 1 cut(s) 88
BsuRI GGCC 3 cut(s) 173, 354, 517
BtrI CACGTC 1 cut(s) 313
BtsCI GGATG 4 cut(s) 63, 434, 505, 518
BtsI GCAGTG 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 467
CfoI GCGC 2 cut(s) 221, 365
Cfr13I GGNCC 5 cut(s) 229, 352, 353, 402, 516
Cfr9I CCCGGG 1 cut(s) 518
Csp6I GTAC 1 cut(s) 330
CviAII CATG 1 cut(s) 448
CviQI GTAC 1 cut(s) 330
DdeI CTNAG 1 cut(s) 88
DinI GGCGCC 1 cut(s) 364
EaeI YGGCCR 1 cut(s) 171
Eam1104I CTCTTC 3 cut(s) 80, 106, 148
EarI CTCTTC 3 cut(s) 80, 106, 148
EciI GGCGGA 1 cut(s) 236
Eco105I TACGTA 1 cut(s) 329
Eco130I CCWWGG 2 cut(s) 51, 342
Eco24I GRGCYC 2 cut(s) 356, 477
Eco47I GGWCC 2 cut(s) 229, 402
Eco57I CTGAAG 1 cut(s) 132
Eco81I CCTNAGG 1 cut(s) 88
Eco88I CYCGRG 2 cut(s) 470, 518
EcoT14I CCWWGG 2 cut(s) 51, 342
EcoT38I GRGCYC 2 cut(s) 356, 477
EgeI GGCGCC 1 cut(s) 364
EheI GGCGCC 1 cut(s) 364
ErhI CCWWGG 2 cut(s) 51, 342
FaeI CATG 1 cut(s) 451
FaiI YATR 2 cut(s) 449, 493
FaqI GGGAC 1 cut(s) 215
FatI CATG 1 cut(s) 447
FauI CCCGC 1 cut(s) 470
FblI GTMKAC 1 cut(s) 453
FokI GGATG 4 cut(s) 50, 421, 512, 525
FriOI GRGCYC 2 cut(s) 356, 477
FspBI CTAG 1 cut(s) 41
GlaI GCGC 2 cut(s) 220, 364
HaeII RGCGCY 1 cut(s) 366
HaeIII GGCC 3 cut(s) 173, 354, 517
HapII CCGG 3 cut(s) 227, 400, 519
HhaI GCGC 2 cut(s) 221, 365
Hin1I GRCGYC 2 cut(s) 125, 363
Hin1II CATG 1 cut(s) 451
Hin6I GCGC 2 cut(s) 219, 363
HinP1I GCGC 2 cut(s) 219, 363
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HinfI GANTC 1 cut(s) 204
HpaII CCGG 3 cut(s) 227, 400, 519
HphI GGTGA 4 cut(s) 70, 120, 126, 283
Hpy166II GTNNAC 1 cut(s) 454
Hpy188I TCNGA 1 cut(s) 203
Hpy188III TCNNGA 1 cut(s) 260
Hpy8I GTNNAC 1 cut(s) 454
Hpy99I CGWCG 2 cut(s) 127, 566
HpyAV CCTTC 2 cut(s) 243, 280
HpyCH4III ACNGT 1 cut(s) 534
HpyCH4IV ACGT 5 cut(s) 125, 312, 328, 422, 564
HpyF10VI GCNNNNNNNGC 1 cut(s) 360
HpyF3I CTNAG 1 cut(s) 88
HpySE526I ACGT 5 cut(s) 125, 312, 328, 422, 564
Hsp92I GRCGYC 2 cut(s) 125, 363
Hsp92II CATG 1 cut(s) 451
HspAI GCGC 2 cut(s) 219, 363
KasI GGCGCC 1 cut(s) 362
LmnI GCTCC 2 cut(s) 431, 480
LpnPI CCDG 5 cut(s) 26, 155, 240, 413, 532
LweI GCATC 2 cut(s) 443, 540
MaeI CTAG 1 cut(s) 41
MaeII ACGT 5 cut(s) 125, 312, 328, 422, 564
MaeIII GTNAC 2 cut(s) 126, 205
MboII GAAGA 7 cut(s) 20, 28, 67, 93, 135, 138, 155
MhlI GDGCHC 4 cut(s) 356, 378, 422, 477
MlsI TGGCCA 1 cut(s) 173
MluNI TGGCCA 1 cut(s) 173
Mly113I GGCGCC 1 cut(s) 363
MlyI GAGTC 1 cut(s) 213
Mox20I TGGCCA 1 cut(s) 173
MscI TGGCCA 1 cut(s) 173
MseI TTAA 1 cut(s) 545
MslI CAYNNNNRTG 1 cut(s) 413
Msp20I TGGCCA 1 cut(s) 173
MspI CCGG 3 cut(s) 227, 400, 519
MspR9I CCNGG 4 cut(s) 227, 400, 519, 520
MwoI GCNNNNNNNGC 1 cut(s) 360
NarI GGCGCC 1 cut(s) 363
NciI CCSGG 4 cut(s) 227, 400, 519, 520
NlaIII CATG 1 cut(s) 451
NlaIV GGNNCC 4 cut(s) 231, 354, 364, 476
NmuCI GTSAC 2 cut(s) 126, 205
PcsI WCGNNNNNNNCGW 1 cut(s) 334
PflFI GACNNNGTC 1 cut(s) 227
PleI GAGTC 1 cut(s) 212
PluTI GGCGCC 1 cut(s) 366
PpsI GAGTC 1 cut(s) 212
Ppu21I YACGTR 1 cut(s) 329
PspN4I GGNNCC 4 cut(s) 231, 354, 364, 476
PspOMI GGGCCC 1 cut(s) 352
PspPI GGNCC 5 cut(s) 229, 352, 353, 402, 516
PsyI GACNNNGTC 1 cut(s) 227
RsaI GTAC 1 cut(s) 331
RsaNI GTAC 1 cut(s) 330
RseI CAYNNNNRTG 1 cut(s) 413
SalI GTCGAC 1 cut(s) 452
SaqAI TTAA 1 cut(s) 545
Sau96I GGNCC 5 cut(s) 229, 352, 353, 402, 516
SchI GAGTC 1 cut(s) 213
ScrFI CCNGG 4 cut(s) 227, 400, 519, 520
SduI GDGCHC 4 cut(s) 356, 378, 422, 477
SfaNI GCATC 2 cut(s) 443, 540
SfoI GGCGCC 1 cut(s) 364
SinI GGWCC 2 cut(s) 229, 402
SmaI CCCGGG 1 cut(s) 520
SmiMI CAYNNNNRTG 1 cut(s) 413
SnaBI TACGTA 1 cut(s) 329
SsiI CCGC 3 cut(s) 247, 438, 463
SspDI GGCGCC 1 cut(s) 362
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 4 cut(s) 225, 398, 517, 518
StyI CCWWGG 2 cut(s) 51, 342
TaaI ACNGT 1 cut(s) 534
TaiI ACGT 5 cut(s) 128, 315, 331, 425, 567
TaqI TCGA 6 cut(s) 192, 261, 372, 384, 411, 453
Tru1I TTAA 1 cut(s) 545
Tru9I TTAA 1 cut(s) 545
TscAI CASTG 1 cut(s) 221
TseFI GTSAC 2 cut(s) 126, 205
Tsp45I GTSAC 2 cut(s) 126, 205
TspDTI ATGAA 1 cut(s) 17
TspMI CCCGGG 1 cut(s) 518
TspRI CASTG 1 cut(s) 221
Tth111I GACNNNGTC 1 cut(s) 227
VpaK11BI GGWCC 2 cut(s) 229, 402
XcmI CCANNNNNNNNNTGG 1 cut(s) 412
XmaI CCCGGG 1 cut(s) 518
XmiI GTMKAC 1 cut(s) 453
XspI CTAG 1 cut(s) 41
ZraI GACGTC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.