MD07G1156900.v1.1

Methyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0016587
Physical Location & Seq
Reverse (-)
22794350 .. 22795270
921 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1156900.v1.1.491

Sequence Viewer

Length: 921 bp
ATGAGAGGAGACCATCCCCACCACCAAAAAATATTCACCCCCTTAAAGCTAGCCAAACCCATCGCCTACCTCCTCCTCCTCCTCATCTCCTTTACCCTAGGCTACCTCTCCTCCTCTTCTTCTCCCACCACCTCCTCCTCACCCCCCTCTTTTCCTCCCTCCACCCCCATACTCTACCAACTAGCCAGCCTCCCGACTAACCTCGACCACTTCCTACTCACCACTCACTGCTCTCCCCCACTCCCTCCTCACCTCATCCGCCAAACTCTCCTTGACCACCTCTTCAACTCCACCTCCCCCTTCACCAACTTCCCCCCTCCCCACGCCGCTCCTCTCCTCCGCCATAGCCGCATCAAGGGCTGGGGCTCCAAAGGCGCCGTTTTCCAAAACCTCATCCAAAAACTCAAACCCCAAACCATCATCGAAGTTGGCACCTTCCTCGGCGCCTCCGCCATCCACATGGCGGAGTTAACCCACCAATTCGGCCTCAACACTACCCAAATCCTTTGCCTCGACGACTTCCGTGGCTGGCCTGGCTTCCGCGGTCGATTTAGCGACATCAGCCTCCTAAATAGCGACGTTCTTCTGCTTTACCAGTTCATGCAGAACGTCGTGTCAGTAAACGCCACGGAGTCGGTTTTGCCCGTCCCGTTTTCGACCGGGGCGGGGCTTGACTGGCTCTGCCAGATGGGCGTGTTTGGAGACTTGATCGAAGTGGATGCAGGTCATGATTTTATTTCGGCATGGTCCGATATTAACCGGGCCTACCGGATTTTACGTCCTGGCGGAATAATATTCGGGCATGATTATTTTACGGCGGCAGATGACAGAGGTGTAAGAAGGGCGGTAACTTTGTTTGCTCGAGTTTATGGACTTAAGATTAAGCTTGATGGGCAGCATTGGGTCATTGACTCGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_24

Protein Analysis

307

Amino Acids

33.9

Weight (kDa)

8.44

Isoelectric Point (pI)

33.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_24 PF13578 141 - 270 6.9e-10 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016587)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01180
malus_domestica MD07G1156900.v1.1
prunus_persica Prupe.2G195400_v2.0.a1
pyrus_communis pycom07g15350
rosa_chinensis RchiOBHm_Chr1g0360821 RchiOBHm_Chr1g0360831
rosa_laevigata RLG00000027783
rosa_multiflora Rmu_ssc0000022.1_g000046
rosa_roxburghii Rroxscaffold_4G00295780
rosa_rugosa Rorug01G0281900
rosa_samantha Rh1AG293800 Rh1BG258600 Rh1DG288800
rosa_wichuraiana Rw1G026000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 713
AccB1I GGYRCC 3 cut(s) 374, 431, 443
AccBSI CCGCTC 1 cut(s) 329
AccII CGCG 1 cut(s) 543
AcyI GRCGYC 2 cut(s) 375, 444
AfiI CCNNNNNNNGG 3 cut(s) 355, 463, 666
AflII CTTAAG 1 cut(s) 875
AgsI TTSAA 1 cut(s) 286
AjnI CCWGG 2 cut(s) 532, 781
AluBI AGCT 2 cut(s) 49, 886
AluI AGCT 2 cut(s) 49, 886
Alw26I GTCTC 2 cut(s) 3, 696
Ama87I CYCGRG 2 cut(s) 861, 913
AoxI GGCC 3 cut(s) 484, 530, 762
ApeKI GCWGC 1 cut(s) 895
AspA2I CCTAGG 1 cut(s) 97
AspLEI GCGC 2 cut(s) 377, 446
AspS9I GGNCC 2 cut(s) 747, 762
AsuC2I CCSGG 2 cut(s) 661, 761
AsuHPI GGTGA 5 cut(s) 28, 132, 211, 242, 295
AsuNHI GCTAGC 1 cut(s) 49
AvaI CYCGRG 2 cut(s) 861, 913
AvaII GGWCC 1 cut(s) 747
AvrII CCTAGG 1 cut(s) 97
BanI GGYRCC 3 cut(s) 374, 431, 443
BanII GRGCYC 1 cut(s) 368
BbvI GCAGC 1 cut(s) 907
BccI CCATC 6 cut(s) 21, 68, 425, 461, 682, 884
BceAI ACGGC 2 cut(s) 362, 831
BcgI CGANNNNNNTGC 4 cut(s) 421, 455, 701, 735
BciT130I CCWGG 2 cut(s) 534, 783
BcnI CCSGG 2 cut(s) 661, 761
BcoDI GTCTC 2 cut(s) 3, 696
BfaI CTAG 3 cut(s) 50, 98, 182
BfoI RGCGCY 2 cut(s) 378, 447
BfrI CTTAAG 1 cut(s) 875
BfuAI ACCTGC 1 cut(s) 713
BglI GCCNNNNNGGC 1 cut(s) 690
BisI GCNGC 4 cut(s) 327, 349, 819, 896
BlnI CCTAGG 1 cut(s) 97
BlsI GCNGC 4 cut(s) 328, 350, 820, 897
Bme1390I CCNGG 4 cut(s) 534, 661, 761, 783
Bme18I GGWCC 1 cut(s) 747
BmeT110I CYCGRG 2 cut(s) 861, 913
BmgT120I GGNCC 2 cut(s) 747, 762
BmiI GGNNCC 4 cut(s) 367, 376, 433, 445
BmrFI CCNGG 4 cut(s) 534, 661, 761, 783
BmsI GCATC 2 cut(s) 360, 709
BmtI GCTAGC 1 cut(s) 53
BpuMI CCSGG 2 cut(s) 661, 761
BsaHI GRCGYC 2 cut(s) 375, 444
BsaI GGTCTC 1 cut(s) 3
BsaJI CCNNGG 6 cut(s) 97, 439, 523, 541, 627, 660
BsaWI WCCGGW 1 cut(s) 768
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 278, 308
Bsc4I CCNNNNNNNGG 3 cut(s) 355, 463, 666
Bse1I ACTGG 2 cut(s) 595, 680
BseBI CCWGG 2 cut(s) 534, 783
BseDI CCNNGG 6 cut(s) 97, 439, 523, 541, 627, 660
BseGI GGATG 5 cut(s) 13, 255, 393, 453, 724
BseLI CCNNNNNNNGG 3 cut(s) 355, 463, 666
BseNI ACTGG 2 cut(s) 595, 680
BseXI GCAGC 1 cut(s) 907
BseYI CCCAGC 1 cut(s) 360
Bsh1236I CGCG 1 cut(s) 543
Bsh1285I CGRYCG 2 cut(s) 547, 660
BshFI GGCC 3 cut(s) 486, 532, 764
BshNI GGYRCC 3 cut(s) 374, 431, 443
BsiEI CGRYCG 2 cut(s) 547, 660
BsiHKCI CYCGRG 2 cut(s) 861, 913
BsiSI CCGG 3 cut(s) 660, 760, 769
BslFI GGGAC 1 cut(s) 632
BslI CCNNNNNNNGG 3 cut(s) 355, 463, 666
BsmAI GTCTC 2 cut(s) 3, 696
BsmFI GGGAC 1 cut(s) 632
BsnI GGCC 3 cut(s) 486, 532, 764
Bso31I GGTCTC 1 cut(s) 3
BsoBI CYCGRG 2 cut(s) 861, 913
Bsp1286I GDGCHC 1 cut(s) 368
Bsp143I GATC 1 cut(s) 708
BspANI GGCC 3 cut(s) 486, 532, 764
BspFNI CGCG 1 cut(s) 543
BspHI TCATGA 1 cut(s) 727
BspLI GGNNCC 4 cut(s) 367, 376, 433, 445
BspMI ACCTGC 1 cut(s) 713
BspOI GCTAGC 1 cut(s) 53
BspT107I GGYRCC 3 cut(s) 374, 431, 443
BspTI CTTAAG 1 cut(s) 875
BspTNI GGTCTC 1 cut(s) 3
BsrBI CCGCTC 1 cut(s) 329
BsrI ACTGG 2 cut(s) 595, 680
BssECI CCNNGG 6 cut(s) 97, 439, 523, 541, 627, 660
BssMI GATC 1 cut(s) 708
BssNI GRCGYC 2 cut(s) 375, 444
BssT1I CCWWGG 1 cut(s) 97
Bst2UI CCWGG 2 cut(s) 534, 783
Bst6I CTCTTC 2 cut(s) 121, 287
BstACI GRCGYC 2 cut(s) 375, 444
BstAFI CTTAAG 1 cut(s) 875
BstC8I GCNNGC 3 cut(s) 51, 187, 530
BstDSI CCRYGG 3 cut(s) 523, 541, 627
BstF5I GGATG 5 cut(s) 13, 255, 393, 453, 724
BstFNI CGCG 1 cut(s) 543
BstH2I RGCGCY 2 cut(s) 378, 447
BstHHI GCGC 2 cut(s) 377, 446
BstKTI GATC 1 cut(s) 711
BstMAI GTCTC 2 cut(s) 3, 696
BstMBI GATC 1 cut(s) 708
BstMCI CGRYCG 2 cut(s) 547, 660
BstMWI GCNNNNNNNGC 8 cut(s) 348, 357, 372, 534, 561, 676, 690, 892
BstNI CCWGG 2 cut(s) 534, 783
BstSCI CCNGG 4 cut(s) 532, 659, 759, 781
BstUI CGCG 1 cut(s) 543
BstV1I GCAGC 1 cut(s) 907
BstXI CCANNNNNNTGG 1 cut(s) 460
BsuRI GGCC 3 cut(s) 486, 532, 764
BtgI CCRYGG 3 cut(s) 523, 541, 627
BtgZI GCGATG 1 cut(s) 46
BtsCI GGATG 5 cut(s) 13, 255, 393, 453, 724
BtsI GCAGTG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 226
BveI ACCTGC 1 cut(s) 713
Cac8I GCNNGC 3 cut(s) 51, 187, 530
CciI TCATGA 1 cut(s) 727
CfoI GCGC 2 cut(s) 377, 446
Cfr13I GGNCC 2 cut(s) 747, 762
Cfr42I CCGCGG 1 cut(s) 544
CviAII CATG 5 cut(s) 460, 601, 728, 744, 803
DinI GGCGCC 2 cut(s) 376, 445
DpnI GATC 1 cut(s) 710
DpnII GATC 1 cut(s) 708
Eam1104I CTCTTC 2 cut(s) 121, 287
EarI CTCTTC 2 cut(s) 121, 287
EciI GGCGGA 5 cut(s) 248, 329, 439, 479, 801
Eco130I CCWWGG 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 368
Eco31I GGTCTC 1 cut(s) 3
Eco47I GGWCC 1 cut(s) 747
Eco88I CYCGRG 2 cut(s) 861, 913
EcoRII CCWGG 2 cut(s) 532, 781
EcoT14I CCWWGG 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 368
EgeI GGCGCC 2 cut(s) 376, 445
EheI GGCGCC 2 cut(s) 376, 445
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 5 cut(s) 463, 604, 731, 747, 806
FaiI YATR 8 cut(s) 170, 345, 461, 602, 729, 745, 804, 870
FaqI GGGAC 1 cut(s) 632
FatI CATG 5 cut(s) 459, 600, 727, 743, 802
FauI CCCGC 1 cut(s) 658
Fnu4HI GCNGC 4 cut(s) 327, 349, 819, 896
FokI GGATG 4 cut(s) 242, 380, 440, 731
FriOI GRGCYC 1 cut(s) 368
Fsp4HI GCNGC 4 cut(s) 327, 349, 819, 896
FspBI CTAG 3 cut(s) 50, 98, 182
GlaI GCGC 2 cut(s) 376, 445
GluI GCNGC 4 cut(s) 327, 349, 819, 896
GsaI CCCAGC 1 cut(s) 364
HaeII RGCGCY 2 cut(s) 378, 447
HaeIII GGCC 3 cut(s) 486, 532, 764
HapII CCGG 3 cut(s) 660, 760, 769
HhaI GCGC 2 cut(s) 377, 446
Hin1I GRCGYC 2 cut(s) 375, 444
Hin1II CATG 5 cut(s) 463, 604, 731, 747, 806
Hin6I GCGC 2 cut(s) 375, 444
HinP1I GCGC 2 cut(s) 375, 444
HincII GTYRAC 1 cut(s) 471
HindII GTYRAC 1 cut(s) 471
HindIII AAGCTT 1 cut(s) 884
HinfI GANTC 2 cut(s) 632, 911
HpaI GTTAAC 1 cut(s) 471
HpaII CCGG 3 cut(s) 660, 760, 769
HphI GGTGA 5 cut(s) 28, 132, 211, 242, 295
Hpy166II GTNNAC 2 cut(s) 471, 622
Hpy188I TCNGA 1 cut(s) 751
Hpy188III TCNNGA 2 cut(s) 193, 728
Hpy8I GTNNAC 2 cut(s) 471, 622
Hpy99I CGWCG 3 cut(s) 518, 581, 614
HpyAV CCTTC 3 cut(s) 310, 445, 834
HpyCH4IV ACGT 3 cut(s) 579, 609, 778
HpyCH4V TGCA 2 cut(s) 604, 722
HpyF10VI GCNNNNNNNGC 8 cut(s) 348, 357, 372, 534, 561, 676, 690, 892
HpySE526I ACGT 3 cut(s) 579, 609, 778
Hsp92I GRCGYC 2 cut(s) 375, 444
Hsp92II CATG 5 cut(s) 463, 604, 731, 747, 806
HspAI GCGC 2 cut(s) 375, 444
KasI GGCGCC 2 cut(s) 374, 443
KspAI GTTAAC 1 cut(s) 471
KspI CCGCGG 1 cut(s) 544
Kzo9I GATC 1 cut(s) 708
LmnI GCTCC 2 cut(s) 334, 371
Lsp1109I GCAGC 1 cut(s) 907
LweI GCATC 2 cut(s) 360, 709
MaeI CTAG 3 cut(s) 50, 98, 182
MaeII ACGT 3 cut(s) 579, 609, 778
MaeIII GTNAC 1 cut(s) 847
MalI GATC 1 cut(s) 710
MbiI CCGCTC 1 cut(s) 329
MboI GATC 1 cut(s) 708
MboII GAAGA 4 cut(s) 108, 111, 274, 575
MhlI GDGCHC 1 cut(s) 368
MluCI AATT 1 cut(s) 479
Mly113I GGCGCC 2 cut(s) 375, 444
MlyI GAGTC 2 cut(s) 641, 905
MseI TTAA 6 cut(s) 44, 470, 756, 876, 882, 919
MslI CAYNNNNRTG 1 cut(s) 458
MspA1I CMGCKG 1 cut(s) 543
MspCI CTTAAG 1 cut(s) 875
MspI CCGG 3 cut(s) 660, 760, 769
MspR9I CCNGG 4 cut(s) 534, 661, 761, 783
MvaI CCWGG 2 cut(s) 534, 783
MvnI CGCG 1 cut(s) 543
MwoI GCNNNNNNNGC 8 cut(s) 348, 357, 372, 534, 561, 676, 690, 892
NarI GGCGCC 2 cut(s) 375, 444
NciI CCSGG 2 cut(s) 661, 761
NdeII GATC 1 cut(s) 708
NheI GCTAGC 1 cut(s) 49
NlaIII CATG 5 cut(s) 463, 604, 731, 747, 806
NlaIV GGNNCC 4 cut(s) 367, 376, 433, 445
NmeAIII GCCGAG 1 cut(s) 420
PaeR7I CTCGAG 2 cut(s) 861, 913
PagI TCATGA 1 cut(s) 727
PkrI GCNGC 4 cut(s) 328, 350, 820, 897
PleI GAGTC 2 cut(s) 640, 905
PluTI GGCGCC 2 cut(s) 378, 447
PpsI GAGTC 2 cut(s) 640, 905
Psp6I CCWGG 2 cut(s) 532, 781
PspFI CCCAGC 1 cut(s) 360
PspGI CCWGG 2 cut(s) 532, 781
PspN4I GGNNCC 4 cut(s) 367, 376, 433, 445
PspPI GGNCC 2 cut(s) 747, 762
PspXI VCTCGAGB 2 cut(s) 861, 913
RseI CAYNNNNRTG 1 cut(s) 458
SacII CCGCGG 1 cut(s) 544
SaqAI TTAA 6 cut(s) 44, 470, 756, 876, 882, 919
SatI GCNGC 4 cut(s) 327, 349, 819, 896
Sau3AI GATC 1 cut(s) 708
Sau96I GGNCC 2 cut(s) 747, 762
SchI GAGTC 2 cut(s) 641, 905
ScrFI CCNGG 4 cut(s) 534, 661, 761, 783
SduI GDGCHC 1 cut(s) 368
SfaNI GCATC 2 cut(s) 360, 709
SfoI GGCGCC 2 cut(s) 376, 445
Sfr274I CTCGAG 2 cut(s) 861, 913
Sfr303I CCGCGG 1 cut(s) 544
SgrBI CCGCGG 1 cut(s) 544
SinI GGWCC 1 cut(s) 747
SlaI CTCGAG 2 cut(s) 861, 913
SmiMI CAYNNNNRTG 1 cut(s) 458
SmlI CTYRAG 3 cut(s) 861, 875, 913
SmoI CTYRAG 3 cut(s) 861, 875, 913
Sse9I AATT 1 cut(s) 479
SspDI GGCGCC 2 cut(s) 374, 443
SspI AATATT 2 cut(s) 33, 795
SspMI CTAG 3 cut(s) 50, 98, 182
StyD4I CCNGG 4 cut(s) 532, 659, 759, 781
StyI CCWWGG 1 cut(s) 97
TaiI ACGT 3 cut(s) 582, 612, 781
TaqI TCGA 8 cut(s) 204, 423, 513, 547, 656, 711, 862, 914
TasI AATT 1 cut(s) 479
TauI GCSGC 3 cut(s) 329, 351, 821
Tru1I TTAA 6 cut(s) 44, 470, 756, 876, 882, 919
Tru9I TTAA 6 cut(s) 44, 470, 756, 876, 882, 919
TscAI CASTG 1 cut(s) 233
TseI GCWGC 1 cut(s) 895
TspDTI ATGAA 1 cut(s) 589
TspGWI ACGGA 2 cut(s) 512, 644
TspRI CASTG 1 cut(s) 233
Vha464I CTTAAG 1 cut(s) 875
VpaK11BI GGWCC 1 cut(s) 747
XhoI CTCGAG 2 cut(s) 861, 913
XmaJI CCTAGG 1 cut(s) 97
XspI CTAG 3 cut(s) 50, 98, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.