RchiOBHm_Chr1g0360821

Methyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016587
Physical Location & Seq
Reverse (-)
52710967 .. 52711290
324 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58576

Sequence Viewer

Length: 324 bp
ATGCAAAATATCGTATCCGCCAACGCGACGGAGTCGGTTTTACCCGTACCGTTTTCAACTGGGTCGGTACTTGATAAGCTTTGTGAGTGGGGTATTTTTGGTGATTTGATAGAAGTGGATGCGGGTTATGATTTTAATTCGGCTTGGTCGGATATCAACCGGGCTTATCGGATCCTAAAACCCGGTGGGGTGCTTTTCGGGCACAATTATTTCACCGCGGCTGATGATAGAGGGGTAAGAAGGGCGGTAACTTTATTTGCTAGGGTTTATGGGCTCAAAATTAAACTGGAAAGGCAGCATTGGGTCATTCACTCGGGTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_24

Protein Analysis

107

Amino Acids

11.99

Weight (kDa)

6.82

Isoelectric Point (pI)

21.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016587)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01180
malus_domestica MD07G1156900.v1.1
prunus_persica Prupe.2G195400_v2.0.a1
pyrus_communis pycom07g15350
rosa_chinensis RchiOBHm_Chr1g0360821 RchiOBHm_Chr1g0360831
rosa_laevigata RLG00000027783
rosa_multiflora Rmu_ssc0000022.1_g000046
rosa_roxburghii Rroxscaffold_4G00295780
rosa_rugosa Rorug01G0281900
rosa_samantha Rh1AG293800 Rh1BG258600 Rh1DG288800
rosa_wichuraiana Rw1G026000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 26, 218
AciI CCGC 5 cut(s) 18, 122, 216, 218, 245
AclWI GGATC 2 cut(s) 166, 179
AfaI GTAC 2 cut(s) 48, 69
AgsI TTSAA 1 cut(s) 57
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
AlwI GGATC 2 cut(s) 166, 179
Ama87I CYCGRG 1 cut(s) 313
ApeKI GCWGC 1 cut(s) 295
AsuC2I CCSGG 2 cut(s) 161, 183
AsuHPI GGTGA 2 cut(s) 113, 205
AvaI CYCGRG 1 cut(s) 313
BaeGI GKGCMC 1 cut(s) 204
BamHI GGATCC 1 cut(s) 171
BanII GRGCYC 1 cut(s) 276
BbvI GCAGC 1 cut(s) 307
BciVI GTATCC 1 cut(s) 25
BcnI CCSGG 2 cut(s) 161, 183
BfaI CTAG 1 cut(s) 261
BfuI GTATCC 1 cut(s) 25
BisI GCNGC 2 cut(s) 219, 296
BlsI GCNGC 2 cut(s) 220, 297
Bme1390I CCNGG 2 cut(s) 161, 183
BmeT110I CYCGRG 1 cut(s) 313
BmiI GGNNCC 1 cut(s) 173
BmrFI CCNGG 2 cut(s) 161, 183
BmrI ACTGGG 1 cut(s) 69
BmsI GCATC 1 cut(s) 109
BmuI ACTGGG 1 cut(s) 69
BpuMI CCSGG 2 cut(s) 161, 183
BsaJI CCNNGG 1 cut(s) 216
Bse1I ACTGG 2 cut(s) 64, 291
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 1 cut(s) 124
BseNI ACTGG 2 cut(s) 64, 291
BseSI GKGCMC 1 cut(s) 204
BseXI GCAGC 1 cut(s) 307
Bsh1236I CGCG 2 cut(s) 26, 218
BsiHKCI CYCGRG 1 cut(s) 313
BsiSI CCGG 2 cut(s) 160, 183
BsoBI CYCGRG 1 cut(s) 313
Bsp1286I GDGCHC 2 cut(s) 204, 276
Bsp143I GATC 1 cut(s) 171
BspACI CCGC 5 cut(s) 18, 122, 216, 218, 245
BspFNI CGCG 2 cut(s) 26, 218
BspLI GGNNCC 1 cut(s) 173
BspPI GGATC 2 cut(s) 166, 179
BsrI ACTGG 2 cut(s) 64, 291
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 51
BstDSI CCRYGG 1 cut(s) 216
BstF5I GGATG 1 cut(s) 124
BstFNI CGCG 2 cut(s) 26, 218
BstKTI GATC 1 cut(s) 174
BstMBI GATC 1 cut(s) 171
BstMWI GCNNNNNNNGC 1 cut(s) 199
BstSCI CCNGG 2 cut(s) 159, 181
BstSLI GKGCMC 1 cut(s) 204
BstUI CGCG 2 cut(s) 26, 218
BstV1I GCAGC 1 cut(s) 307
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
BsuI GTATCC 1 cut(s) 25
BtgI CCRYGG 1 cut(s) 216
BtsCI GGATG 1 cut(s) 124
Cfr42I CCGCGG 1 cut(s) 219
Csp6I GTAC 2 cut(s) 47, 68
CviJI RGCY 5 cut(s) 79, 143, 164, 221, 274
CviKI_1 RGCY 5 cut(s) 79, 143, 164, 221, 274
CviQI GTAC 2 cut(s) 47, 68
DpnI GATC 1 cut(s) 173
DpnII GATC 1 cut(s) 171
EciI GGCGGA 1 cut(s) 7
Eco24I GRGCYC 1 cut(s) 276
Eco32I GATATC 1 cut(s) 154
Eco88I CYCGRG 1 cut(s) 313
EcoRV GATATC 1 cut(s) 154
EcoT38I GRGCYC 1 cut(s) 276
FaiI YATR 2 cut(s) 129, 270
FauI CCCGC 1 cut(s) 115
Fnu4HI GCNGC 2 cut(s) 219, 296
FokI GGATG 1 cut(s) 131
FriOI GRGCYC 1 cut(s) 276
Fsp4HI GCNGC 2 cut(s) 219, 296
FspBI CTAG 1 cut(s) 261
GluI GCNGC 2 cut(s) 219, 296
HapII CCGG 2 cut(s) 160, 183
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 1 cut(s) 32
HpaII CCGG 2 cut(s) 160, 183
HphI GGTGA 2 cut(s) 113, 205
Hpy188I TCNGA 2 cut(s) 151, 171
Hpy99I CGWCG 1 cut(s) 31
HpyAV CCTTC 1 cut(s) 234
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 199
KspI CCGCGG 1 cut(s) 219
Kzo9I GATC 1 cut(s) 171
LpnPI CCDG 4 cut(s) 45, 173, 196, 272
Lsp1109I GCAGC 1 cut(s) 307
LweI GCATC 1 cut(s) 109
MaeI CTAG 1 cut(s) 261
MaeIII GTNAC 1 cut(s) 247
MalI GATC 1 cut(s) 173
MboI GATC 1 cut(s) 171
MflI RGATCY 1 cut(s) 171
MhlI GDGCHC 2 cut(s) 204, 276
MluCI AATT 3 cut(s) 136, 205, 279
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 1 cut(s) 224
MseI TTAA 2 cut(s) 135, 282
MspA1I CMGCKG 1 cut(s) 218
MspI CCGG 2 cut(s) 160, 183
MspR9I CCNGG 2 cut(s) 161, 183
MvnI CGCG 2 cut(s) 26, 218
MwoI GCNNNNNNNGC 1 cut(s) 199
NciI CCSGG 2 cut(s) 161, 183
NdeII GATC 1 cut(s) 171
NlaIV GGNNCC 1 cut(s) 173
PflFI GACNNNGTC 1 cut(s) 31
PkrI GCNGC 2 cut(s) 220, 297
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 173
PsuI RGATCY 1 cut(s) 171
PsyI GACNNNGTC 1 cut(s) 31
RsaI GTAC 2 cut(s) 48, 69
RsaNI GTAC 2 cut(s) 47, 68
SacII CCGCGG 1 cut(s) 219
SaqAI TTAA 2 cut(s) 135, 282
SatI GCNGC 2 cut(s) 219, 296
Sau3AI GATC 1 cut(s) 171
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 2 cut(s) 161, 183
SduI GDGCHC 2 cut(s) 204, 276
SetI ASST 1 cut(s) 81
SfaNI GCATC 1 cut(s) 109
Sfr303I CCGCGG 1 cut(s) 219
SgrBI CCGCGG 1 cut(s) 219
Sse9I AATT 3 cut(s) 136, 205, 279
SsiI CCGC 5 cut(s) 18, 122, 216, 218, 245
SspMI CTAG 1 cut(s) 261
StyD4I CCNGG 2 cut(s) 159, 181
TaaI ACNGT 1 cut(s) 51
TasI AATT 3 cut(s) 136, 205, 279
TauI GCSGC 1 cut(s) 221
Tru1I TTAA 2 cut(s) 135, 282
Tru9I TTAA 2 cut(s) 135, 282
TseI GCWGC 1 cut(s) 295
TspGWI ACGGA 1 cut(s) 44
Tth111I GACNNNGTC 1 cut(s) 31
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.