Prupe.2G195400_v2.0.a1

Methyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0016587
Physical Location & Seq
Reverse (-)
23320912 .. 23322266
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G195400.1

Sequence Viewer

Length: 921 bp
ATGAACCCAAAACCACCCACCATGAAAGAAGACTACCAAAAGAAACTCACCCCCTTCAAACTACTCAAACCCATCGCCTACCTCCTCCTCCTCCTCCTCTCCTTCACTCTTGGATACCTCTCTTCCCCTTCTTCTCCAACAACCCCCTCTTTTTCTCCTCCCACCCCCCAACTCCCCCAACTCGTCAACCTCCCAACTCAACTCGACCACTTCCGACTCACCACCCACTGCGCCACCCCACTCCCTTCTCACCTCATCCGCCAAACCATCCTTGACCGCCTCTTCAACTCCACCTCCCCCTTCGTCAACTTCCCCCCTCCCTACGCCACCCCCCTCCTCCGACGCAGCCGCGTCAAAGGCTGGGGCTCAAAAGGCGCCGTTTTCCAAAACCTCATCCAAAAAGTCCAACCCAAAACCATCATCGAAATCGGCACCTTCCTTGGCGCCTCCGCCATCCACATGGCCCGCTTGACCAGCCAGCTCGGCCTCAAGGACACCCAGATCCTCTGCCTTGACGACTTCCGCGGCTGGCCGGGCTTCCGTAACAGGTTCGGCGGCATCGGCCTCCTAAACGGCGACGTTTTGCTGCTCTACCAGTTCATGCAGAACGTCGTCTCGGTCAACGCAACCGAGACGGTCTTGCCCATTCCGTTCTCTACCGGGTCGGGTCTTGACTGGCTCTGTGAGATGGGCGTGTACGGGGATTTGATCGAAGTGGATGCGGGTCATGATTTTAATTCAGCCTGGTCCGATATTATTCGGGCTTACCGGATTTTGCGGCCCGGCGGGGTTATTTTCGGGCACGATTATTTTACCGCAGCGGATGACCACGGGGTGAGGAGGGCGGTAACTTTGTTTGCCCGAGTTTACGGACTCAAGATTAAGCTTGATGGGCAACATTGGGTCATTGAATCGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_24

Protein Analysis

307

Amino Acids

34.11

Weight (kDa)

9.34

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016587)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01180
malus_domestica MD07G1156900.v1.1
prunus_persica Prupe.2G195400_v2.0.a1
pyrus_communis pycom07g15350
rosa_chinensis RchiOBHm_Chr1g0360821 RchiOBHm_Chr1g0360831
rosa_laevigata RLG00000027783
rosa_multiflora Rmu_ssc0000022.1_g000046
rosa_roxburghii Rroxscaffold_4G00295780
rosa_rugosa Rorug01G0281900
rosa_samantha Rh1AG293800 Rh1BG258600 Rh1DG288800
rosa_wichuraiana Rw1G026000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 374, 431, 443
AccII CGCG 2 cut(s) 351, 525
AclWI GGATC 1 cut(s) 496
AcoI YGGCCR 1 cut(s) 530
AcyI GRCGYC 2 cut(s) 375, 444
AdeI CACNNNGTG 1 cut(s) 835
AfaI GTAC 1 cut(s) 698
AgsI TTSAA 3 cut(s) 58, 286, 911
AjnI CCWGG 1 cut(s) 743
AluBI AGCT 2 cut(s) 481, 886
AluI AGCT 2 cut(s) 481, 886
Alw26I GTCTC 2 cut(s) 619, 626
AlwI GGATC 1 cut(s) 496
Ama87I CYCGRG 1 cut(s) 861
AoxI GGCC 5 cut(s) 462, 484, 530, 562, 779
ApeKI GCWGC 3 cut(s) 345, 586, 818
AspLEI GCGC 3 cut(s) 233, 377, 446
AspS9I GGNCC 3 cut(s) 463, 747, 780
AsuC2I CCSGG 3 cut(s) 534, 661, 783
AsuHPI GGTGA 4 cut(s) 40, 211, 242, 847
AvaI CYCGRG 1 cut(s) 861
AvaII GGWCC 1 cut(s) 747
BaeGI GKGCMC 1 cut(s) 804
BanI GGYRCC 3 cut(s) 374, 431, 443
BanII GRGCYC 1 cut(s) 368
BbsI GAAGAC 1 cut(s) 36
BbvI GCAGC 3 cut(s) 357, 573, 830
BccI CCATC 6 cut(s) 80, 275, 425, 461, 682, 884
BceAI ACGGC 2 cut(s) 362, 589
BcgI CGANNNNNNTGC 2 cut(s) 701, 735
BciT130I CCWGG 1 cut(s) 745
BciVI GTATCC 1 cut(s) 107
BcnI CCSGG 3 cut(s) 534, 661, 783
BcoDI GTCTC 2 cut(s) 619, 626
BfoI RGCGCY 2 cut(s) 378, 447
BfuI GTATCC 1 cut(s) 107
BglI GCCNNNNNGGC 1 cut(s) 483
BisI GCNGC 7 cut(s) 346, 349, 526, 556, 587, 779, 819
BlsI GCNGC 7 cut(s) 347, 350, 527, 557, 588, 780, 820
Bme1390I CCNGG 4 cut(s) 534, 661, 745, 783
Bme18I GGWCC 1 cut(s) 747
BmeT110I CYCGRG 1 cut(s) 861
BmgT120I GGNCC 3 cut(s) 463, 747, 780
BmiI GGNNCC 3 cut(s) 376, 433, 445
BmrFI CCNGG 4 cut(s) 534, 661, 745, 783
BmsI GCATC 2 cut(s) 567, 709
BpiI GAAGAC 1 cut(s) 36
BpuEI CTTGAG 2 cut(s) 473, 860
BpuMI CCSGG 3 cut(s) 534, 661, 783
BsaHI GRCGYC 2 cut(s) 375, 444
BsaJI CCNNGG 3 cut(s) 439, 523, 829
BsaWI WCCGGW 1 cut(s) 768
BsaXI ACNNNNNCTCC 2 cut(s) 278, 308
Bse1I ACTGG 2 cut(s) 595, 680
BseBI CCWGG 1 cut(s) 745
BseDI CCNNGG 3 cut(s) 439, 523, 829
BseGI GGATG 6 cut(s) 255, 267, 393, 453, 724, 829
BseNI ACTGG 2 cut(s) 595, 680
BseRI GAGGAG 8 cut(s) 74, 77, 80, 83, 86, 147, 326, 853
BseSI GKGCMC 1 cut(s) 804
BseXI GCAGC 3 cut(s) 357, 573, 830
BseYI CCCAGC 1 cut(s) 360
Bsh1236I CGCG 2 cut(s) 351, 525
BshFI GGCC 5 cut(s) 464, 486, 532, 564, 781
BshNI GGYRCC 3 cut(s) 374, 431, 443
BsiHKCI CYCGRG 1 cut(s) 861
BsiSI CCGG 4 cut(s) 533, 660, 769, 783
BsmAI GTCTC 2 cut(s) 619, 626
BsmBI CGTCTC 2 cut(s) 619, 626
BsnI GGCC 5 cut(s) 464, 486, 532, 564, 781
BsoBI CYCGRG 1 cut(s) 861
Bsp1286I GDGCHC 2 cut(s) 368, 804
Bsp143I GATC 2 cut(s) 501, 708
BspANI GGCC 5 cut(s) 464, 486, 532, 564, 781
BspFNI CGCG 2 cut(s) 351, 525
BspHI TCATGA 1 cut(s) 727
BspLI GGNNCC 3 cut(s) 376, 433, 445
BspPI GGATC 1 cut(s) 496
BspT107I GGYRCC 3 cut(s) 374, 431, 443
BsrI ACTGG 2 cut(s) 595, 680
BssECI CCNNGG 3 cut(s) 439, 523, 829
BssMI GATC 2 cut(s) 501, 708
BssNI GRCGYC 2 cut(s) 375, 444
BssT1I CCWWGG 1 cut(s) 439
Bst2UI CCWGG 1 cut(s) 745
Bst4CI ACNGT 1 cut(s) 637
Bst6I CTCTTC 2 cut(s) 127, 287
BstACI GRCGYC 2 cut(s) 375, 444
BstC8I GCNNGC 3 cut(s) 466, 479, 530
BstDSI CCRYGG 2 cut(s) 523, 829
BstF5I GGATG 6 cut(s) 255, 267, 393, 453, 724, 829
BstFNI CGCG 2 cut(s) 351, 525
BstH2I RGCGCY 2 cut(s) 378, 447
BstHHI GCGC 3 cut(s) 233, 377, 446
BstKTI GATC 2 cut(s) 504, 711
BstMAI GTCTC 2 cut(s) 619, 626
BstMBI GATC 2 cut(s) 501, 708
BstMWI GCNNNNNNNGC 7 cut(s) 357, 372, 474, 483, 534, 561, 892
BstNI CCWGG 1 cut(s) 745
BstSCI CCNGG 4 cut(s) 532, 659, 743, 781
BstSLI GKGCMC 1 cut(s) 804
BstUI CGCG 2 cut(s) 351, 525
BstV1I GCAGC 3 cut(s) 357, 573, 830
BstV2I GAAGAC 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 501
BstXI CCANNNNNNTGG 1 cut(s) 460
BstYI RGATCY 1 cut(s) 501
BsuI GTATCC 1 cut(s) 107
BsuRI GGCC 5 cut(s) 464, 486, 532, 564, 781
BtgI CCRYGG 2 cut(s) 523, 829
BtgZI GCGATG 1 cut(s) 58
BtsCI GGATG 6 cut(s) 255, 267, 393, 453, 724, 829
BtsI GCAGTG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 226
Cac8I GCNNGC 3 cut(s) 466, 479, 530
CciI TCATGA 1 cut(s) 727
CfoI GCGC 3 cut(s) 233, 377, 446
Cfr13I GGNCC 3 cut(s) 463, 747, 780
Cfr42I CCGCGG 1 cut(s) 526
CseI GACGC 2 cut(s) 340, 351
Csp6I GTAC 1 cut(s) 697
CviAII CATG 4 cut(s) 22, 460, 601, 728
CviQI GTAC 1 cut(s) 697
DinI GGCGCC 2 cut(s) 376, 445
DpnI GATC 2 cut(s) 503, 710
DpnII GATC 2 cut(s) 501, 708
DraIII CACNNNGTG 1 cut(s) 835
EaeI YGGCCR 1 cut(s) 530
Eam1104I CTCTTC 2 cut(s) 127, 287
EarI CTCTTC 2 cut(s) 127, 287
EciI GGCGGA 2 cut(s) 248, 439
Eco130I CCWWGG 1 cut(s) 439
Eco24I GRGCYC 1 cut(s) 368
Eco47I GGWCC 1 cut(s) 747
Eco88I CYCGRG 1 cut(s) 861
EcoRII CCWGG 1 cut(s) 743
EcoT14I CCWWGG 1 cut(s) 439
EcoT38I GRGCYC 1 cut(s) 368
EgeI GGCGCC 2 cut(s) 376, 445
EheI GGCGCC 2 cut(s) 376, 445
ErhI CCWWGG 1 cut(s) 439
Esp3I CGTCTC 2 cut(s) 619, 626
FaeI CATG 4 cut(s) 25, 463, 604, 731
FaiI YATR 4 cut(s) 23, 461, 602, 729
FatI CATG 4 cut(s) 21, 459, 600, 727
FauI CCCGC 3 cut(s) 473, 715, 779
Fnu4HI GCNGC 7 cut(s) 346, 349, 526, 556, 587, 779, 819
FokI GGATG 6 cut(s) 242, 254, 380, 440, 731, 836
FriOI GRGCYC 1 cut(s) 368
Fsp4HI GCNGC 7 cut(s) 346, 349, 526, 556, 587, 779, 819
GlaI GCGC 3 cut(s) 232, 376, 445
GluI GCNGC 7 cut(s) 346, 349, 526, 556, 587, 779, 819
GsaI CCCAGC 1 cut(s) 364
HaeII RGCGCY 2 cut(s) 378, 447
HaeIII GGCC 5 cut(s) 464, 486, 532, 564, 781
HapII CCGG 4 cut(s) 533, 660, 769, 783
HgaI GACGC 2 cut(s) 340, 351
HhaI GCGC 3 cut(s) 233, 377, 446
Hin1I GRCGYC 2 cut(s) 375, 444
Hin1II CATG 4 cut(s) 25, 463, 604, 731
Hin6I GCGC 3 cut(s) 231, 375, 444
HinP1I GCGC 3 cut(s) 231, 375, 444
HincII GTYRAC 3 cut(s) 187, 307, 622
HindII GTYRAC 3 cut(s) 187, 307, 622
HindIII AAGCTT 1 cut(s) 884
HinfI GANTC 3 cut(s) 216, 873, 911
HpaII CCGG 4 cut(s) 533, 660, 769, 783
HphI GGTGA 4 cut(s) 40, 211, 242, 847
Hpy166II GTNNAC 5 cut(s) 187, 307, 622, 697, 868
Hpy188I TCNGA 3 cut(s) 215, 341, 751
Hpy188III TCNNGA 3 cut(s) 671, 728, 877
Hpy8I GTNNAC 5 cut(s) 187, 307, 622, 697, 868
Hpy99I CGWCG 3 cut(s) 345, 581, 614
HpyAV CCTTC 6 cut(s) 64, 112, 138, 255, 310, 445
HpyCH4III ACNGT 1 cut(s) 637
HpyCH4IV ACGT 2 cut(s) 579, 609
HpyCH4V TGCA 1 cut(s) 604
HpyF10VI GCNNNNNNNGC 7 cut(s) 357, 372, 474, 483, 534, 561, 892
HpySE526I ACGT 2 cut(s) 579, 609
Hsp92I GRCGYC 2 cut(s) 375, 444
Hsp92II CATG 4 cut(s) 25, 463, 604, 731
HspAI GCGC 3 cut(s) 231, 375, 444
KasI GGCGCC 2 cut(s) 374, 443
KspI CCGCGG 1 cut(s) 526
Kzo9I GATC 2 cut(s) 501, 708
Lsp1109I GCAGC 3 cut(s) 357, 573, 830
LweI GCATC 2 cut(s) 567, 709
MaeII ACGT 2 cut(s) 579, 609
MaeIII GTNAC 2 cut(s) 542, 847
MalI GATC 2 cut(s) 503, 710
MboI GATC 2 cut(s) 501, 708
MboII GAAGA 4 cut(s) 41, 114, 123, 274
MflI RGATCY 1 cut(s) 501
MhlI GDGCHC 2 cut(s) 368, 804
MluCI AATT 1 cut(s) 736
Mly113I GGCGCC 2 cut(s) 375, 444
MlyI GAGTC 2 cut(s) 210, 867
MmeI TCCRAC 4 cut(s) 161, 238, 364, 430
MseI TTAA 3 cut(s) 735, 882, 919
MslI CAYNNNNRTG 1 cut(s) 458
MspA1I CMGCKG 2 cut(s) 525, 821
MspI CCGG 4 cut(s) 533, 660, 769, 783
MspR9I CCNGG 4 cut(s) 534, 661, 745, 783
MvaI CCWGG 1 cut(s) 745
MvnI CGCG 2 cut(s) 351, 525
MwoI GCNNNNNNNGC 7 cut(s) 357, 372, 474, 483, 534, 561, 892
NarI GGCGCC 2 cut(s) 375, 444
NciI CCSGG 3 cut(s) 534, 661, 783
NdeII GATC 2 cut(s) 501, 708
NlaIII CATG 4 cut(s) 25, 463, 604, 731
NlaIV GGNNCC 3 cut(s) 376, 433, 445
NmeAIII GCCGAG 1 cut(s) 462
PagI TCATGA 1 cut(s) 727
PfeI GAWTC 1 cut(s) 911
PkrI GCNGC 7 cut(s) 347, 350, 527, 557, 588, 780, 820
PleI GAGTC 2 cut(s) 210, 867
PluTI GGCGCC 2 cut(s) 378, 447
PpsI GAGTC 2 cut(s) 210, 867
Psp6I CCWGG 1 cut(s) 743
PspFI CCCAGC 1 cut(s) 360
PspGI CCWGG 1 cut(s) 743
PspN4I GGNNCC 3 cut(s) 376, 433, 445
PspPI GGNCC 3 cut(s) 463, 747, 780
PsuI RGATCY 1 cut(s) 501
RsaI GTAC 1 cut(s) 698
RsaNI GTAC 1 cut(s) 697
RseI CAYNNNNRTG 1 cut(s) 458
SacII CCGCGG 1 cut(s) 526
SaqAI TTAA 3 cut(s) 735, 882, 919
SatI GCNGC 7 cut(s) 346, 349, 526, 556, 587, 779, 819
Sau3AI GATC 2 cut(s) 501, 708
Sau96I GGNCC 3 cut(s) 463, 747, 780
SchI GAGTC 2 cut(s) 210, 867
ScrFI CCNGG 4 cut(s) 534, 661, 745, 783
SduI GDGCHC 2 cut(s) 368, 804
SfaNI GCATC 2 cut(s) 567, 709
SfoI GGCGCC 2 cut(s) 376, 445
Sfr303I CCGCGG 1 cut(s) 526
SgrBI CCGCGG 1 cut(s) 526
SinI GGWCC 1 cut(s) 747
SmiMI CAYNNNNRTG 1 cut(s) 458
SmlI CTYRAG 2 cut(s) 488, 875
SmoI CTYRAG 2 cut(s) 488, 875
Sse9I AATT 1 cut(s) 736
SspDI GGCGCC 2 cut(s) 374, 443
StyD4I CCNGG 4 cut(s) 532, 659, 743, 781
StyI CCWWGG 1 cut(s) 439
TaaI ACNGT 1 cut(s) 637
TaiI ACGT 2 cut(s) 582, 612
TaqI TCGA 4 cut(s) 204, 423, 711, 914
TaqII GACCGA 1 cut(s) 607
TasI AATT 1 cut(s) 736
TauI GCSGC 4 cut(s) 351, 528, 558, 781
TfiI GAWTC 1 cut(s) 911
Tru1I TTAA 3 cut(s) 735, 882, 919
Tru9I TTAA 3 cut(s) 735, 882, 919
TscAI CASTG 1 cut(s) 233
TseI GCWGC 3 cut(s) 345, 586, 818
TspDTI ATGAA 3 cut(s) 17, 38, 589
TspGWI ACGGA 3 cut(s) 530, 639, 885
TspRI CASTG 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.