AT1G01290

cofactor of nitrate reductase and xanthine dehydrogenase 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012432
Physical Location & Seq
Forward (+)
114202 .. 116407
2206 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G01290.2

Sequence Viewer

Length: 813 bp
ATGATTTCGACGCTCCGTCGCGCCGTGTTTCTCCGTCGATTTCCGGCGGTGGTTTCTCCGATCAAAAGGGCTTTCAGCAGTAGAATTGACGATGAATTCGATCCCCAAATCATGAATATAAATGAGCTGAATCAGGAGATGCAGTCAATCTTTGGACAAGAACCTTCTCCCGATGGTCCTGGGACAATGGATTTCTCTGAGTTGAAATCATCCAAAATCGAACCTTTGAGATCGAAGAATATTGATTTTAGACAACAAATTGAGTATCATAAATCTACACACTCGAGCAAGAATGATTCGCAAGCTATAGAACAATATGCAAAAGTGGCTAGTGATATGTCTAAGCTAACACATGTTGGTATCGCAGGGGAAGCTCAAATGGTGGATGTTTCTTCTAAGGACAATTCCAAGAGAACTGCATTGGCCTGTTGTAAAGTTATTCTTGGGAAACGAGTATTTGATTTGGTCTTAGCGAATCAAATGGGGAAAGGAGATGTTCTTGGAGTGGCGAAAATAGCTGGGATCAACGGAGCAAAACAAACCAGCAGCTTAATACCATTGTGTCATAACATTGCTCTTACGCATGTTCGTGTAGACTTACGACTAAACCCTGAGGATTTTAGTGTTGACATTGAAGGAGAAGCTTCTTGCACTGGAAAAACCGGAGTTGAGATGGAAGCTATGACTGCTGTATCAGTTGCTGGTTTGACTGTTTACGATATGTGTAAGGCTGCTTCCAAAGATATCAGTATTACAGACGTGAGGCTCGAGCGTAAAACTGGTGGAAAGAGCGGGTCTTGGTCTAGACTCTAG

Protein Analysis

270

Amino Acids

29.51

Weight (kDa)

8.22

Isoelectric Point (pI)

56.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MoaC PF01967 127 - 262 3.2e-53 MoaC family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01290 AT1G01290
fragaria_vesca FvH4_7g16680
malus_domestica MD07G1150800.v1.1
prunus_persica Prupe.2G189500_v2.0.a1 Prupe.2G189500_v2.0.a1 Prupe.2G189500_v2.0.a1
pyrus_communis pycom07g14910
rosa_chinensis RchiOBHm_Chr1g0359831
rosa_laevigata RLG00000027850
rosa_multiflora Rmu_sc0003191.1_g000005 Rmu_ssc0000371.1_g000002
rosa_roxburghii Rroxscaffold_4G00296780
rosa_rugosa Rorug01G0272900
rosa_samantha Rh1AG287000 Rh1BG252800 Rh1CG270000 Rh1DG281800
rosa_wichuraiana Rw1G025490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 792
AccI GTMKAC 1 cut(s) 594
AccII CGCG 1 cut(s) 21
AciI CCGC 2 cut(s) 47, 792
AclWI GGATC 2 cut(s) 95, 530
AcsI RAATTY 1 cut(s) 95
AflIII ACRYGT 1 cut(s) 352
AgsI TTSAA 2 cut(s) 205, 635
AhdI GACNNNNNGTC 1 cut(s) 15
AjiI CACGTC 1 cut(s) 760
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 8 cut(s) 127, 305, 346, 374, 518, 549, 644, 680
AluI AGCT 8 cut(s) 127, 305, 346, 374, 518, 549, 644, 680
AlwI GGATC 2 cut(s) 95, 530
AlwNI CAGNNNCTG 1 cut(s) 701
Ama87I CYCGRG 2 cut(s) 283, 767
AoxI GGCC 1 cut(s) 423
ApeKI GCWGC 2 cut(s) 546, 731
ApoI RAATTY 1 cut(s) 95
ArsI GACNNNNNNTTYG 2 cut(s) 80, 112
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 176
AvaI CYCGRG 2 cut(s) 283, 767
AvaII GGWCC 1 cut(s) 176
AxyI CCTNAGG 1 cut(s) 612
BaeI ACNNNNGTAYC 2 cut(s) 675, 708
BarI GAAGNNNNNNTAC 2 cut(s) 718, 750
BbvI GCAGC 2 cut(s) 558, 718
BccI CCATC 2 cut(s) 167, 667
BceAI ACGGC 1 cut(s) 8
BciT130I CCWGG 1 cut(s) 180
BfaI CTAG 3 cut(s) 330, 804, 811
BfmI CTRYAG 1 cut(s) 306
BisI GCNGC 2 cut(s) 547, 732
BlsI GCNGC 2 cut(s) 548, 733
Bme1390I CCNGG 1 cut(s) 180
Bme18I GGWCC 1 cut(s) 176
BmeRI GACNNNNNGTC 1 cut(s) 15
BmeT110I CYCGRG 2 cut(s) 283, 767
BmgBI CACGTC 1 cut(s) 760
BmgT120I GGNCC 1 cut(s) 176
BmrFI CCNGG 1 cut(s) 180
BmsI GCATC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 179
BsaWI WCCGGW 1 cut(s) 662
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bse1I ACTGG 2 cut(s) 658, 784
Bse21I CCTNAGG 1 cut(s) 612
Bse3DI GCAATG 1 cut(s) 570
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 179
BseGI GGATG 2 cut(s) 209, 391
BseMI GCAATG 1 cut(s) 570
BseMII CTCAG 2 cut(s) 189, 603
BseNI ACTGG 2 cut(s) 658, 784
BseXI GCAGC 2 cut(s) 558, 718
BseYI CCCAGC 1 cut(s) 518
Bsh1236I CGCG 1 cut(s) 21
BshFI GGCC 1 cut(s) 425
BsiHKCI CYCGRG 2 cut(s) 283, 767
BsiSI CCGG 2 cut(s) 44, 663
BslFI GGGAC 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 196
BsnI GGCC 1 cut(s) 425
BsoBI CYCGRG 2 cut(s) 283, 767
Bsp143I GATC 4 cut(s) 60, 100, 230, 522
BspACI CCGC 2 cut(s) 47, 792
BspANI GGCC 1 cut(s) 425
BspCNI CTCAG 2 cut(s) 190, 604
BspFNI CGCG 1 cut(s) 21
BspHI TCATGA 1 cut(s) 111
BspPI GGATC 2 cut(s) 95, 530
BsrBI CCGCTC 1 cut(s) 792
BsrDI GCAATG 1 cut(s) 570
BsrI ACTGG 2 cut(s) 658, 784
BssECI CCNNGG 1 cut(s) 179
BssMI GATC 4 cut(s) 60, 100, 230, 522
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 1 cut(s) 712
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 5 cut(s) 198, 342, 396, 469, 612
BstF5I GGATG 2 cut(s) 209, 391
BstFNI CGCG 1 cut(s) 21
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 4 cut(s) 63, 103, 233, 525
BstMBI GATC 4 cut(s) 60, 100, 230, 522
BstMWI GCNNNNNNNGC 4 cut(s) 326, 371, 515, 686
BstNI CCWGG 1 cut(s) 180
BstNSI RCATGY 2 cut(s) 356, 587
BstSCI CCNGG 1 cut(s) 178
BstSFI CTRYAG 1 cut(s) 306
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 2 cut(s) 558, 718
Bsu36I CCTNAGG 1 cut(s) 612
BsuRI GGCC 1 cut(s) 425
BtrI CACGTC 1 cut(s) 760
BtsCI GGATG 2 cut(s) 209, 391
BtsIMutI CAGTG 1 cut(s) 651
Cac8I GCNNGC 1 cut(s) 303
CaiI CAGNNNCTG 1 cut(s) 701
CciI TCATGA 1 cut(s) 111
CfoI GCGC 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 176
CseI GACGC 1 cut(s) 19
CviAII CATG 3 cut(s) 112, 353, 584
DdeI CTNAG 5 cut(s) 198, 342, 396, 469, 612
DpnI GATC 4 cut(s) 62, 102, 232, 524
DpnII GATC 4 cut(s) 60, 100, 230, 522
DriI GACNNNNNGTC 1 cut(s) 15
Eam1105I GACNNNNNGTC 1 cut(s) 15
Eco32I GATATC 1 cut(s) 745
Eco47I GGWCC 1 cut(s) 176
Eco81I CCTNAGG 1 cut(s) 612
Eco88I CYCGRG 2 cut(s) 283, 767
EcoRI GAATTC 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 178
EcoRV GATATC 1 cut(s) 745
FaeI CATG 3 cut(s) 115, 356, 587
FalI AAGNNNNNCTT 2 cut(s) 426, 458
FaqI GGGAC 1 cut(s) 196
FatI CATG 3 cut(s) 111, 352, 583
FauI CCCGC 1 cut(s) 785
FblI GTMKAC 1 cut(s) 594
Fnu4HI GCNGC 2 cut(s) 547, 732
FokI GGATG 2 cut(s) 196, 398
Fsp4HI GCNGC 2 cut(s) 547, 732
FspBI CTAG 3 cut(s) 330, 804, 811
GlaI GCGC 1 cut(s) 22
GluI GCNGC 2 cut(s) 547, 732
GsaI CCCAGC 1 cut(s) 522
HaeIII GGCC 1 cut(s) 425
HapII CCGG 2 cut(s) 44, 663
HgaI GACGC 1 cut(s) 19
HhaI GCGC 1 cut(s) 23
Hin1II CATG 3 cut(s) 115, 356, 587
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HincII GTYRAC 1 cut(s) 628
HindII GTYRAC 1 cut(s) 628
HindIII AAGCTT 1 cut(s) 642
HinfI GANTC 4 cut(s) 130, 296, 475, 807
HpaII CCGG 2 cut(s) 44, 663
Hpy166II GTNNAC 3 cut(s) 595, 628, 715
Hpy188I TCNGA 2 cut(s) 60, 199
Hpy188III TCNNGA 4 cut(s) 112, 134, 170, 804
Hpy8I GTNNAC 3 cut(s) 595, 628, 715
Hpy99I CGWCG 3 cut(s) 13, 21, 39
HpyAV CCTTC 2 cut(s) 174, 629
HpyCH4III ACNGT 1 cut(s) 712
HpyCH4IV ACGT 1 cut(s) 759
HpyCH4V TGCA 4 cut(s) 142, 320, 419, 651
HpyF10VI GCNNNNNNNGC 4 cut(s) 326, 371, 515, 686
HpyF3I CTNAG 5 cut(s) 198, 342, 396, 469, 612
HpySE526I ACGT 1 cut(s) 759
Hsp92II CATG 3 cut(s) 115, 356, 587
HspAI GCGC 1 cut(s) 21
Kzo9I GATC 4 cut(s) 60, 100, 230, 522
LmnI GCTCC 2 cut(s) 18, 530
Lsp1109I GCAGC 2 cut(s) 558, 718
LweI GCATC 1 cut(s) 129
MaeI CTAG 3 cut(s) 330, 804, 811
MaeII ACGT 1 cut(s) 759
MalI GATC 4 cut(s) 62, 102, 232, 524
MbiI CCGCTC 1 cut(s) 792
MboI GATC 4 cut(s) 60, 100, 230, 522
MboII GAAGA 2 cut(s) 247, 384
MluCI AATT 4 cut(s) 84, 95, 258, 403
MlyI GAGTC 1 cut(s) 801
MnlI CCTC 2 cut(s) 607, 756
MseI TTAA 1 cut(s) 551
MslI CAYNNNNRTG 1 cut(s) 588
MspI CCGG 2 cut(s) 44, 663
MspR9I CCNGG 1 cut(s) 180
MvaI CCWGG 1 cut(s) 180
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 4 cut(s) 326, 371, 515, 686
NdeII GATC 4 cut(s) 60, 100, 230, 522
NlaIII CATG 3 cut(s) 115, 356, 587
NspI RCATGY 2 cut(s) 356, 587
PaeR7I CTCGAG 2 cut(s) 283, 767
PagI TCATGA 1 cut(s) 111
PciI ACATGT 1 cut(s) 352
PcsI WCGNNNNNNNCGW 2 cut(s) 96, 765
PfeI GAWTC 3 cut(s) 130, 296, 475
PkrI GCNGC 2 cut(s) 548, 733
PleI GAGTC 1 cut(s) 801
PpsI GAGTC 1 cut(s) 801
PscI ACATGT 1 cut(s) 352
Psp6I CCWGG 1 cut(s) 178
PspFI CCCAGC 1 cut(s) 518
PspGI CCWGG 1 cut(s) 178
PspPI GGNCC 1 cut(s) 176
PspXI VCTCGAGB 2 cut(s) 283, 767
PstNI CAGNNNCTG 1 cut(s) 701
RseI CAYNNNNRTG 1 cut(s) 588
SaqAI TTAA 1 cut(s) 551
SatI GCNGC 2 cut(s) 547, 732
Sau3AI GATC 4 cut(s) 60, 100, 230, 522
Sau96I GGNCC 1 cut(s) 176
SchI GAGTC 1 cut(s) 801
ScrFI CCNGG 1 cut(s) 180
SfaNI GCATC 1 cut(s) 129
SfcI CTRYAG 1 cut(s) 306
Sfr274I CTCGAG 2 cut(s) 283, 767
SinI GGWCC 1 cut(s) 176
SlaI CTCGAG 2 cut(s) 283, 767
SmiMI CAYNNNNRTG 1 cut(s) 588
SmlI CTYRAG 2 cut(s) 283, 767
SmoI CTYRAG 2 cut(s) 283, 767
Sse9I AATT 4 cut(s) 84, 95, 258, 403
SsiI CCGC 2 cut(s) 47, 792
SspI AATATT 1 cut(s) 241
SspMI CTAG 3 cut(s) 330, 804, 811
StyD4I CCNGG 1 cut(s) 178
TaaI ACNGT 1 cut(s) 712
TaiI ACGT 1 cut(s) 762
TaqI TCGA 7 cut(s) 8, 37, 99, 219, 233, 284, 768
TasI AATT 4 cut(s) 84, 95, 258, 403
TfiI GAWTC 3 cut(s) 130, 296, 475
Tru1I TTAA 1 cut(s) 551
Tru9I TTAA 1 cut(s) 551
TscAI CASTG 1 cut(s) 658
TseI GCWGC 2 cut(s) 546, 731
TspDTI ATGAA 2 cut(s) 108, 128
TspGWI ACGGA 3 cut(s) 5, 23, 543
TspRI CASTG 1 cut(s) 658
VpaK11BI GGWCC 1 cut(s) 176
XapI RAATTY 1 cut(s) 95
XbaI TCTAGA 1 cut(s) 803
XceI RCATGY 2 cut(s) 356, 587
XhoI CTCGAG 2 cut(s) 283, 767
XmiI GTMKAC 1 cut(s) 594
XspI CTAG 3 cut(s) 330, 804, 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.