Rh1CG270000

Cyclic pyranopterin monophosphate synthase accessory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0012432
Physical Location & Seq
Reverse (-)
53600300 .. 53601504
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG270000.1

Sequence Viewer

Length: 711 bp
ATGTTTCTTCGGCGAATGGCGGTTTCGTTTTCTCACTCGAGAAGGTTTCTTAGTAGCAGTAGCAGTAGCAGTAACAGCAGCATTGATATTGCGAAAGCGATTGATGAGCTGAACAAGGAAATGGAATCCGTATTTGGTGAACCTCCAGCAGAGAGTGGGCTTGCCAGTTCTGCAAGAAATGATGTTACGGCTCAAGAACCTGAGTTAGCATCTCAAGAAAAAAGGGAAGATACGCATGACCTAACCCACATTGGCAGTACAGGGGAGGCTCAAATGGTGGATGTTTCTCCCAAACAAAGTACCAAGAGAACTGCCGTTTCTAGTGGCAAGGTACTTCTTGGCAAGCAGGTGTTTGATTTGGTCTTAGCCAACCAGATGGCCAAGGGAGATGTCCTTAGTGTGGCCAAGATTGCTGGAATAAATGGAGCAAAGCACACAAGCAGTCTCATCCCGCTATGCCACAACATACCACTGACCCATGTCCGTGTTGATCTGACTCTAAATCCCAAGGATTTCAGTGTGGACATCAAAGCAGAAGCAAGTTCAACCGGGAAAACTGGGGTCGAAATGGAAGCAATGACTGCTGTGAGTGTTGCTGGCCTAACAGTCTATGATATGTGCAAAGCTGCTTCGAAGTCTATACATATCACTGATTTAAGACTTGAGAGTAAAGCTGGTGGGAAGAGTGGAGACTGGTCCAGGGAGGAGTAA

Protein Analysis

236

Amino Acids

25.18

Weight (kDa)

6.18

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MoaC PF01967 92 - 227 1.8e-53 MoaC family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01290 AT1G01290
fragaria_vesca FvH4_7g16680
malus_domestica MD07G1150800.v1.1
prunus_persica Prupe.2G189500_v2.0.a1 Prupe.2G189500_v2.0.a1 Prupe.2G189500_v2.0.a1
pyrus_communis pycom07g14910
rosa_chinensis RchiOBHm_Chr1g0359831
rosa_laevigata RLG00000027850
rosa_multiflora Rmu_sc0003191.1_g000005 Rmu_ssc0000371.1_g000002
rosa_roxburghii Rroxscaffold_4G00296780
rosa_rugosa Rorug01G0272900
rosa_samantha Rh1AG287000 Rh1BG252800 Rh1CG270000 Rh1DG281800
rosa_wichuraiana Rw1G025490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 337
Acc36I ACCTGC 1 cut(s) 337
AciI CCGC 2 cut(s) 20, 452
AcoI YGGCCR 2 cut(s) 378, 402
AfaI GTAC 3 cut(s) 259, 301, 333
AfiI CCNNNNNNNGG 1 cut(s) 400
AgsI TTSAA 1 cut(s) 546
AjnI CCWGG 1 cut(s) 698
AjuI GAANNNNNNNTTGG 2 cut(s) 117, 149
AluBI AGCT 3 cut(s) 109, 626, 674
AluI AGCT 3 cut(s) 109, 626, 674
Alw26I GTCTC 2 cut(s) 449, 684
Ama87I CYCGRG 1 cut(s) 37
AoxI GGCC 3 cut(s) 378, 402, 598
ApeKI GCWGC 2 cut(s) 78, 626
AspS9I GGNCC 1 cut(s) 696
AsuC2I CCSGG 1 cut(s) 550
AsuHPI GGTGA 1 cut(s) 149
AsuII TTCGAA 1 cut(s) 632
AvaI CYCGRG 1 cut(s) 37
AvaII GGWCC 1 cut(s) 696
BalI TGGCCA 2 cut(s) 380, 404
BbvI GCAGC 2 cut(s) 90, 613
BccI CCATC 1 cut(s) 370
BceAI ACGGC 2 cut(s) 204, 299
BciT130I CCWGG 1 cut(s) 700
BcnI CCSGG 1 cut(s) 550
BcoDI GTCTC 2 cut(s) 449, 684
BfaI CTAG 1 cut(s) 321
BfuAI ACCTGC 1 cut(s) 337
BisI GCNGC 2 cut(s) 79, 627
BlsI GCNGC 2 cut(s) 80, 628
Bme1390I CCNGG 2 cut(s) 550, 700
Bme18I GGWCC 1 cut(s) 696
BmeT110I CYCGRG 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 696
BmrFI CCNGG 2 cut(s) 550, 700
BmrI ACTGGG 1 cut(s) 567
BmsI GCATC 1 cut(s) 218
BmuI ACTGGG 1 cut(s) 567
BoxI GACNNNNGTC 1 cut(s) 479
BpmI CTGGAG 1 cut(s) 129
Bpu14I TTCGAA 1 cut(s) 632
BpuEI CTTGAG 3 cut(s) 177, 198, 683
BpuMI CCSGG 1 cut(s) 550
BsaJI CCNNGG 3 cut(s) 381, 507, 699
Bsc4I CCNNNNNNNGG 1 cut(s) 400
Bse1I ACTGG 3 cut(s) 165, 562, 698
Bse3DI GCAATG 1 cut(s) 582
BseBI CCWGG 1 cut(s) 700
BseDI CCNNGG 3 cut(s) 381, 507, 699
BseGI GGATG 2 cut(s) 286, 447
BseLI CCNNNNNNNGG 1 cut(s) 400
BseMI GCAATG 1 cut(s) 582
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 3 cut(s) 165, 562, 698
BseXI GCAGC 2 cut(s) 90, 613
BshFI GGCC 3 cut(s) 380, 404, 600
BsiHKCI CYCGRG 1 cut(s) 37
BsiSI CCGG 1 cut(s) 549
BslI CCNNNNNNNGG 1 cut(s) 400
BsmAI GTCTC 2 cut(s) 449, 684
BsnI GGCC 3 cut(s) 380, 404, 600
BsoBI CYCGRG 1 cut(s) 37
Bsp119I TTCGAA 1 cut(s) 632
Bsp143I GATC 1 cut(s) 490
BspACI CCGC 2 cut(s) 20, 452
BspANI GGCC 3 cut(s) 380, 404, 600
BspCNI CTCAG 1 cut(s) 193
BspMI ACCTGC 1 cut(s) 337
BspT104I TTCGAA 1 cut(s) 632
BsrDI GCAATG 1 cut(s) 582
BsrI ACTGG 3 cut(s) 165, 562, 698
BssECI CCNNGG 3 cut(s) 381, 507, 699
BssMI GATC 1 cut(s) 490
BssT1I CCWWGG 2 cut(s) 381, 507
Bst2UI CCWGG 1 cut(s) 700
Bst4CI ACNGT 1 cut(s) 607
Bst6I CTCTTC 1 cut(s) 677
BstAPI GCANNNNNTGC 1 cut(s) 581
BstBI TTCGAA 1 cut(s) 632
BstC8I GCNNGC 3 cut(s) 162, 344, 598
BstDEI CTNAG 4 cut(s) 50, 201, 364, 395
BstF5I GGATG 2 cut(s) 286, 447
BstKTI GATC 1 cut(s) 493
BstMAI GTCTC 2 cut(s) 449, 684
BstMBI GATC 1 cut(s) 490
BstMWI GCNNNNNNNGC 4 cut(s) 75, 170, 410, 581
BstNI CCWGG 1 cut(s) 700
BstPAI GACNNNNGTC 1 cut(s) 479
BstSCI CCNGG 2 cut(s) 548, 698
BstV1I GCAGC 2 cut(s) 90, 613
BstXI CCANNNNNNTGG 1 cut(s) 376
BsuRI GGCC 3 cut(s) 380, 404, 600
BtsCI GGATG 2 cut(s) 286, 447
BtsIMutI CAGTG 3 cut(s) 470, 523, 648
BveI ACCTGC 1 cut(s) 337
Cac8I GCNNGC 3 cut(s) 162, 344, 598
Cfr13I GGNCC 1 cut(s) 696
Csp6I GTAC 3 cut(s) 258, 300, 332
CviAII CATG 2 cut(s) 236, 479
CviQI GTAC 3 cut(s) 258, 300, 332
DdeI CTNAG 4 cut(s) 50, 201, 364, 395
DpnI GATC 1 cut(s) 492
DpnII GATC 1 cut(s) 490
EaeI YGGCCR 2 cut(s) 378, 402
Eam1104I CTCTTC 1 cut(s) 677
EarI CTCTTC 1 cut(s) 677
Eco130I CCWWGG 2 cut(s) 381, 507
Eco47I GGWCC 1 cut(s) 696
Eco88I CYCGRG 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 698
EcoT14I CCWWGG 2 cut(s) 381, 507
ErhI CCWWGG 2 cut(s) 381, 507
FaeI CATG 2 cut(s) 239, 482
FaiI YATR 8 cut(s) 237, 457, 467, 480, 612, 617, 641, 645
FatI CATG 2 cut(s) 235, 478
FauI CCCGC 1 cut(s) 459
Fnu4HI GCNGC 2 cut(s) 79, 627
FokI GGATG 2 cut(s) 293, 434
Fsp4HI GCNGC 2 cut(s) 79, 627
FspBI CTAG 1 cut(s) 321
GluI GCNGC 2 cut(s) 79, 627
GsuI CTGGAG 1 cut(s) 129
HaeIII GGCC 3 cut(s) 380, 404, 600
HapII CCGG 1 cut(s) 549
Hin1II CATG 2 cut(s) 239, 482
HinfI GANTC 2 cut(s) 125, 496
HpaII CCGG 1 cut(s) 549
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 2 cut(s) 140, 523
Hpy188I TCNGA 1 cut(s) 495
Hpy188III TCNNGA 3 cut(s) 39, 194, 215
Hpy8I GTNNAC 2 cut(s) 140, 523
HpyAV CCTTC 1 cut(s) 36
HpyCH4III ACNGT 1 cut(s) 607
HpyCH4V TGCA 2 cut(s) 173, 621
HpyF10VI GCNNNNNNNGC 4 cut(s) 75, 170, 410, 581
HpyF3I CTNAG 4 cut(s) 50, 201, 364, 395
Hsp92II CATG 2 cut(s) 239, 482
Kzo9I GATC 1 cut(s) 490
LmnI GCTCC 1 cut(s) 425
Lsp1109I GCAGC 2 cut(s) 90, 613
LweI GCATC 1 cut(s) 218
MaeI CTAG 1 cut(s) 321
MaeIII GTNAC 2 cut(s) 71, 184
MalI GATC 1 cut(s) 492
MboI GATC 1 cut(s) 490
MboII GAAGA 2 cut(s) 239, 694
MlsI TGGCCA 2 cut(s) 380, 404
MluNI TGGCCA 2 cut(s) 380, 404
MlyI GAGTC 1 cut(s) 490
MnlI CCTC 3 cut(s) 153, 259, 697
Mox20I TGGCCA 2 cut(s) 380, 404
MscI TGGCCA 2 cut(s) 380, 404
MseI TTAA 1 cut(s) 656
MslI CAYNNNNRTG 1 cut(s) 483
Msp20I TGGCCA 2 cut(s) 380, 404
MspI CCGG 1 cut(s) 549
MspR9I CCNGG 2 cut(s) 550, 700
MvaI CCWGG 1 cut(s) 700
MwoI GCNNNNNNNGC 4 cut(s) 75, 170, 410, 581
NciI CCSGG 1 cut(s) 550
NdeII GATC 1 cut(s) 490
NlaIII CATG 2 cut(s) 239, 482
NspV TTCGAA 1 cut(s) 632
PaeR7I CTCGAG 1 cut(s) 37
PaqCI CACCTGC 1 cut(s) 337
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 2 cut(s) 80, 628
PleI GAGTC 1 cut(s) 490
PpsI GAGTC 1 cut(s) 490
PshAI GACNNNNGTC 1 cut(s) 479
Psp6I CCWGG 1 cut(s) 698
PspGI CCWGG 1 cut(s) 698
PspPI GGNCC 1 cut(s) 696
RsaI GTAC 3 cut(s) 259, 301, 333
RsaNI GTAC 3 cut(s) 258, 300, 332
RseI CAYNNNNRTG 1 cut(s) 483
SaqAI TTAA 1 cut(s) 656
SatI GCNGC 2 cut(s) 79, 627
Sau3AI GATC 1 cut(s) 490
Sau96I GGNCC 1 cut(s) 696
SchI GAGTC 1 cut(s) 490
ScrFI CCNGG 2 cut(s) 550, 700
SetI ASST 9 cut(s) 47, 111, 145, 202, 243, 333, 351, 628, 676
SfaNI GCATC 1 cut(s) 218
Sfr274I CTCGAG 1 cut(s) 37
SfuI TTCGAA 1 cut(s) 632
SinI GGWCC 1 cut(s) 696
SlaI CTCGAG 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 483
SmlI CTYRAG 4 cut(s) 37, 192, 213, 662
SmoI CTYRAG 4 cut(s) 37, 192, 213, 662
SsiI CCGC 2 cut(s) 20, 452
SspMI CTAG 1 cut(s) 321
StyD4I CCNGG 2 cut(s) 548, 698
StyI CCWWGG 2 cut(s) 381, 507
TaaI ACNGT 1 cut(s) 607
TaqI TCGA 3 cut(s) 38, 564, 632
TatI WGTACW 1 cut(s) 257
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 1 cut(s) 656
Tru9I TTAA 1 cut(s) 656
TscAI CASTG 3 cut(s) 477, 523, 655
TseI GCWGC 2 cut(s) 78, 626
TspGWI ACGGA 2 cut(s) 118, 473
TspRI CASTG 3 cut(s) 477, 523, 655
VpaK11BI GGWCC 1 cut(s) 696
XhoI CTCGAG 1 cut(s) 37
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.