Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000371.1

Orthogroup ID

OG0012432

Physical Location & Seq

Genomic Coordinates Forward (+)

8241 .. 9442

Gene Structure 1202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000371.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atgcttcttcggcgaatggcggtttcgttttctcactcgagaaggtttcttagtagcaatagcagtagcagtaacagtaacagcagcattgatattgcgaaagcgattgatgagctgaacaaggaaatggaatccgtatttggtgaacctccagcagagagtgggcttgccagttctgcaagaaatgatgttacggctcaagaacctgagttagcatctcaagaaaaaggggaagatacgcatgacctaacccacattggcagtacaggggaggctcaaatggtggatgtttctcccaaacaaagtaccaagagaactgccgtttctagtggcaaggtacttcttggcaagcaggtgtttgatttggtcttagccaaccagatggccaagggagatgtccttagtgtggccaagattgctggaataaatggagcaaagcacacaagcagtctcatcccgctatgccacaacataccactgacccatgtccgcgttgatctgactctaaatcccaaggatttcagtgtggacatcaaagcagaagcaagttcaaccgggaaaactggggtcgaaatggaagcaatgactgctgtgagtgttgctggcctaacagtctatgatatgtgcaaagctgcttcgaagtctatacatatcactgatataagacttgagagtaaagctggtgggaagagtggagactggtccagggaggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 ko04122 map00790 map01100 map04122

Pfam Domains

Protein Families

MoaC

Protein Analysis

238

Amino Acids

25.27

Weight (kDa)

6.0

Isoelectric Point (pI)

44.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01290 AT1G01290
fragaria_vesca	FvH4_7g16680
malus_domestica	MD07G1150800.v1.1
prunus_persica	Prupe.2G189500_v2.0.a1 Prupe.2G189500_v2.0.a1 Prupe.2G189500_v2.0.a1
pyrus_communis	pycom07g14910
rosa_chinensis	RchiOBHm_Chr1g0359831
rosa_laevigata	RLG00000027850
rosa_multiflora	Rmu_sc0003191.1_g000005 Rmu_ssc0000371.1_g000002
rosa_roxburghii	Rroxscaffold_4G00296780
rosa_rugosa	Rorug01G0272900
rosa_samantha	Rh1AG287000 Rh1BG252800 Rh1CG270000 Rh1DG281800
rosa_wichuraiana	Rw1G025490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	343
Acc36I	ACCTGC	1 cut(s)	343
AccII	CGCG	1 cut(s)	492
AciI	CCGC	3 cut(s)	20, 458, 490
AcoI	YGGCCR	2 cut(s)	384, 408
AfaI	GTAC	3 cut(s)	265, 307, 339
AfiI	CCNNNNNNNGG	1 cut(s)	406
AgsI	TTSAA	1 cut(s)	552
AjnI	CCWGG	1 cut(s)	704
AjuI	GAANNNNNNNTTGG	2 cut(s)	123, 155
AluBI	AGCT	3 cut(s)	115, 632, 680
AluI	AGCT	3 cut(s)	115, 632, 680
Alw26I	GTCTC	2 cut(s)	455, 690
Ama87I	CYCGRG	1 cut(s)	37
AoxI	GGCC	3 cut(s)	384, 408, 604
ApeKI	GCWGC	2 cut(s)	84, 632
AspS9I	GGNCC	1 cut(s)	702
AsuC2I	CCSGG	1 cut(s)	556
AsuHPI	GGTGA	1 cut(s)	155
AsuII	TTCGAA	1 cut(s)	638
AvaI	CYCGRG	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	702
BalI	TGGCCA	2 cut(s)	386, 410
BbvI	GCAGC	2 cut(s)	96, 619
BccI	CCATC	1 cut(s)	376
BceAI	ACGGC	2 cut(s)	210, 305
BciT130I	CCWGG	1 cut(s)	706
BcnI	CCSGG	1 cut(s)	556
BcoDI	GTCTC	2 cut(s)	455, 690
BfaI	CTAG	1 cut(s)	327
BfuAI	ACCTGC	1 cut(s)	343
BisI	GCNGC	2 cut(s)	85, 633
BlsI	GCNGC	2 cut(s)	86, 634
Bme1390I	CCNGG	2 cut(s)	556, 706
Bme18I	GGWCC	1 cut(s)	702
BmeT110I	CYCGRG	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	702
BmrFI	CCNGG	2 cut(s)	556, 706
BmrI	ACTGGG	1 cut(s)	573
BmsI	GCATC	1 cut(s)	224
BmuI	ACTGGG	1 cut(s)	573
BoxI	GACNNNNGTC	1 cut(s)	485
BpmI	CTGGAG	1 cut(s)	135
Bpu14I	TTCGAA	1 cut(s)	638
BpuEI	CTTGAG	3 cut(s)	183, 204, 689
BpuMI	CCSGG	1 cut(s)	556
BsaJI	CCNNGG	3 cut(s)	387, 513, 705
Bsc4I	CCNNNNNNNGG	1 cut(s)	406
Bse1I	ACTGG	3 cut(s)	171, 568, 704
Bse3DI	GCAATG	1 cut(s)	588
BseBI	CCWGG	1 cut(s)	706
BseDI	CCNNGG	3 cut(s)	387, 513, 705
BseGI	GGATG	2 cut(s)	292, 453
BseLI	CCNNNNNNNGG	1 cut(s)	406
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	3 cut(s)	171, 568, 704
BseXI	GCAGC	2 cut(s)	96, 619
Bsh1236I	CGCG	1 cut(s)	492
BshFI	GGCC	3 cut(s)	386, 410, 606
BsiHKCI	CYCGRG	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	555
BslI	CCNNNNNNNGG	1 cut(s)	406
BsmAI	GTCTC	2 cut(s)	455, 690
BsnI	GGCC	3 cut(s)	386, 410, 606
BsoBI	CYCGRG	1 cut(s)	37
Bsp119I	TTCGAA	1 cut(s)	638
Bsp143I	GATC	1 cut(s)	496
BspACI	CCGC	3 cut(s)	20, 458, 490
BspANI	GGCC	3 cut(s)	386, 410, 606
BspCNI	CTCAG	1 cut(s)	199
BspFNI	CGCG	1 cut(s)	492
BspMI	ACCTGC	1 cut(s)	343
BspT104I	TTCGAA	1 cut(s)	638
BsrDI	GCAATG	1 cut(s)	588
BsrI	ACTGG	3 cut(s)	171, 568, 704
BssECI	CCNNGG	3 cut(s)	387, 513, 705
BssMI	GATC	1 cut(s)	496
BssT1I	CCWWGG	2 cut(s)	387, 513
Bst2UI	CCWGG	1 cut(s)	706
Bst4CI	ACNGT	2 cut(s)	77, 613
Bst6I	CTCTTC	1 cut(s)	683
BstAPI	GCANNNNNTGC	1 cut(s)	587
BstBI	TTCGAA	1 cut(s)	638
BstC8I	GCNNGC	3 cut(s)	168, 350, 604
BstDEI	CTNAG	4 cut(s)	50, 207, 370, 401
BstF5I	GGATG	2 cut(s)	292, 453
BstFNI	CGCG	1 cut(s)	492
BstKTI	GATC	1 cut(s)	499
BstMAI	GTCTC	2 cut(s)	455, 690
BstMBI	GATC	1 cut(s)	496
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 176, 416, 587
BstNI	CCWGG	1 cut(s)	706
BstPAI	GACNNNNGTC	1 cut(s)	485
BstSCI	CCNGG	2 cut(s)	554, 704
BstUI	CGCG	1 cut(s)	492
BstV1I	GCAGC	2 cut(s)	96, 619
BstXI	CCANNNNNNTGG	1 cut(s)	382
BsuRI	GGCC	3 cut(s)	386, 410, 606
BtsCI	GGATG	2 cut(s)	292, 453
BtsIMutI	CAGTG	3 cut(s)	476, 529, 654
BveI	ACCTGC	1 cut(s)	343
Cac8I	GCNNGC	3 cut(s)	168, 350, 604
Cfr13I	GGNCC	1 cut(s)	702
Csp6I	GTAC	3 cut(s)	264, 306, 338
CviAII	CATG	2 cut(s)	242, 485
CviQI	GTAC	3 cut(s)	264, 306, 338
DdeI	CTNAG	4 cut(s)	50, 207, 370, 401
DpnI	GATC	1 cut(s)	498
DpnII	GATC	1 cut(s)	496
EaeI	YGGCCR	2 cut(s)	384, 408
Eam1104I	CTCTTC	1 cut(s)	683
EarI	CTCTTC	1 cut(s)	683
Eco130I	CCWWGG	2 cut(s)	387, 513
Eco47I	GGWCC	1 cut(s)	702
Eco88I	CYCGRG	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	704
EcoT14I	CCWWGG	2 cut(s)	387, 513
ErhI	CCWWGG	2 cut(s)	387, 513
FaeI	CATG	2 cut(s)	245, 488
FaiI	YATR	9 cut(s)	243, 463, 473, 486, 618, 623, 647, 651, 662
FatI	CATG	2 cut(s)	241, 484
FauI	CCCGC	1 cut(s)	465
Fnu4HI	GCNGC	2 cut(s)	85, 633
FokI	GGATG	2 cut(s)	299, 440
Fsp4HI	GCNGC	2 cut(s)	85, 633
FspBI	CTAG	1 cut(s)	327
GluI	GCNGC	2 cut(s)	85, 633
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	3 cut(s)	386, 410, 606
HapII	CCGG	1 cut(s)	555
Hin1II	CATG	2 cut(s)	245, 488
HinfI	GANTC	2 cut(s)	131, 502
HpaII	CCGG	1 cut(s)	555
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	2 cut(s)	146, 529
Hpy188I	TCNGA	1 cut(s)	501
Hpy188III	TCNNGA	3 cut(s)	39, 200, 221
Hpy8I	GTNNAC	2 cut(s)	146, 529
HpyAV	CCTTC	1 cut(s)	36
HpyCH4III	ACNGT	2 cut(s)	77, 613
HpyCH4V	TGCA	2 cut(s)	179, 627
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 176, 416, 587
HpyF3I	CTNAG	4 cut(s)	50, 207, 370, 401
Hsp92II	CATG	2 cut(s)	245, 488
Kzo9I	GATC	1 cut(s)	496
LmnI	GCTCC	1 cut(s)	431
Lsp1109I	GCAGC	2 cut(s)	96, 619
LweI	GCATC	1 cut(s)	224
MaeI	CTAG	1 cut(s)	327
MaeIII	GTNAC	3 cut(s)	71, 77, 190
MalI	GATC	1 cut(s)	498
MboI	GATC	1 cut(s)	496
MboII	GAAGA	2 cut(s)	245, 700
MlsI	TGGCCA	2 cut(s)	386, 410
MluNI	TGGCCA	2 cut(s)	386, 410
MlyI	GAGTC	1 cut(s)	496
MnlI	CCTC	3 cut(s)	159, 265, 703
Mox20I	TGGCCA	2 cut(s)	386, 410
MscI	TGGCCA	2 cut(s)	386, 410
Msp20I	TGGCCA	2 cut(s)	386, 410
MspI	CCGG	1 cut(s)	555
MspR9I	CCNGG	2 cut(s)	556, 706
MvaI	CCWGG	1 cut(s)	706
MvnI	CGCG	1 cut(s)	492
MwoI	GCNNNNNNNGC	4 cut(s)	10, 176, 416, 587
NciI	CCSGG	1 cut(s)	556
NdeII	GATC	1 cut(s)	496
NlaIII	CATG	2 cut(s)	245, 488
NspV	TTCGAA	1 cut(s)	638
PaeR7I	CTCGAG	1 cut(s)	37
PaqCI	CACCTGC	1 cut(s)	343
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	2 cut(s)	86, 634
PleI	GAGTC	1 cut(s)	496
PpsI	GAGTC	1 cut(s)	496
PshAI	GACNNNNGTC	1 cut(s)	485
Psp6I	CCWGG	1 cut(s)	704
PspGI	CCWGG	1 cut(s)	704
PspPI	GGNCC	1 cut(s)	702
RsaI	GTAC	3 cut(s)	265, 307, 339
RsaNI	GTAC	3 cut(s)	264, 306, 338
SatI	GCNGC	2 cut(s)	85, 633
Sau3AI	GATC	1 cut(s)	496
Sau96I	GGNCC	1 cut(s)	702
SchI	GAGTC	1 cut(s)	496
ScrFI	CCNGG	2 cut(s)	556, 706
SetI	ASST	9 cut(s)	47, 117, 151, 208, 249, 339, 357, 634, 682
SfaNI	GCATC	1 cut(s)	224
Sfr274I	CTCGAG	1 cut(s)	37
SfuI	TTCGAA	1 cut(s)	638
SinI	GGWCC	1 cut(s)	702
SlaI	CTCGAG	1 cut(s)	37
SmlI	CTYRAG	4 cut(s)	37, 198, 219, 668
SmoI	CTYRAG	4 cut(s)	37, 198, 219, 668
SsiI	CCGC	3 cut(s)	20, 458, 490
SspMI	CTAG	1 cut(s)	327
StyD4I	CCNGG	2 cut(s)	554, 704
StyI	CCWWGG	2 cut(s)	387, 513
TaaI	ACNGT	2 cut(s)	77, 613
TaqI	TCGA	3 cut(s)	38, 570, 638
TatI	WGTACW	1 cut(s)	263
TfiI	GAWTC	1 cut(s)	131
TscAI	CASTG	3 cut(s)	483, 529, 661
TseI	GCWGC	2 cut(s)	84, 632
TspGWI	ACGGA	1 cut(s)	124
TspRI	CASTG	3 cut(s)	483, 529, 661
VpaK11BI	GGWCC	1 cut(s)	702
XhoI	CTCGAG	1 cut(s)	37
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.