AT1G01700

guanine nucleotide exchange factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
259307 .. 261667
2361 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G01700.4

Sequence Viewer

Length: 1458 bp
ATGGAGAATTTGCCAAATCACGAAGAAAACGACGATGTGGGCTATCATCAGTCACCTGGTCCCATCGATCCAAATGATCATTCAGCATCTGAAACTCCGGTTTACTCAACAATGAGCACAGATTCTTTTGCTTATCATCGAACATGTTCTGAAACCTCTGGAGGAGGCTTTTCAGACCAAATAGATGAAACCAGCAGTTTCTGCACTGAGGCTTCTCCTAGTGATTGGCCTGTCTTAACCGAATCCAACAACTCTGCGAGCTCAAATTTTCCAACTGTCTTCGACTTGAAACATAATCAGATTGAGACTGATGAGCACCTTGCGGTCCAAGAAATTTCAGAGCCAGAGCTGGAGACGATGAAGGAAAGATTCTCGAAGCTTCTGCTTGGGGAAGATATGTCAGGAAGCGGCAAAGGCGTTTGCACCGCAGTGACAATCTCAAACGCTATAACCAATCTTTATGCTACTGTTTTTGGACAGAATCTAAGATTAGAACCATTGGAGATAGAGCAGAAGACGACGTGGAAGAGAGAAATGAATTGCCTTCTCTCTGTGTGTGACTATATTTTCGAGTTTATCCCAAAGTCACAGAATCTAAGCAATGGAGCCACTGTTGAGGTCATGGAGAGTAGACCAAGAGCAGATATCTACATCAATCTGCCTGCACTCAGAAAACTAGATTCCATGCTTATGGAGGCATTGGATAGTTTTCAAAAGACAGAGTTTTGGTATGCAGAAGAAGGAAGCTTGTCGATGAAGTCAACGCGTTCCGCAACTGGATCATTCAGGAAAGTGATTGTGCAGAGGAAAGAAGAGAAATGGTGGTTACCGATTCCTCTGGTTCCATTACAAGGTTTATCAGAGAAGGCAAGGAAACAACTTAAGAGCAAGCGAGAGAGCACTAATCAAATCCATAAAGCTGCTATGGCCATCAATAGCAGCATACTCGGTGAAATGGATATTCCTGATTCTTACATGGCAACTCTTCCAAAGAGCGGAAAAGCGAGCACAGGAGATGCAATCTATCGACACATGACGAGTTCAGGGCGGTTTTCACCAGAAAAACTTCTAGATCGTCTCAAGATTGTATCAGAACATGAAGCGCTTCAGCTGGCAGATAGAGTAGAAGCTTCAATGTACACATGGAGACGCAAAGCTTGTCTTAACAATTCCAAGTCTTCATGGAATATGGTGAAAGATTTAATGTCAATTACAGAGAGAAGTGACAAGAACTATGTTTTGGCTGAGAGAGCAGAGTCTTTGCTCTTCTGTTTGAAACAACGGTACCCAGAATTGTCTCAGACATCGTTAGATATTTGCAAGATTCATTGCAACAAGGATGTTGGAAAAGCTGTGTTAGAGAGTTATTCAAGAGTTCTTGAAGGTTTAGCTTTTAACATAGTTGCTTGGATTGATGATGTTCTTTATGTAGACAAAACAATGAGAGGAGAAGAATGA

Protein Analysis

485

Amino Acids

54.7

Weight (kDa)

5.21

Isoelectric Point (pI)

49.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRONE PF03759 116 - 231 5.4e-60 PRONE (Plant-specific Rop nucleotide exchanger)
PRONE PF03759 248 - 512 3.5e-102 PRONE (Plant-specific Rop nucleotide exchanger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1284
AccB1I GGYRCC 1 cut(s) 1284
AccBSI CCGCTC 1 cut(s) 996
AccI GTMKAC 2 cut(s) 631, 1431
AccII CGCG 1 cut(s) 766
AciI CCGC 6 cut(s) 323, 408, 426, 771, 996, 1048
AclWI GGATC 2 cut(s) 62, 787
AcoI YGGCCR 1 cut(s) 927
AcsI RAATTY 3 cut(s) 7, 265, 333
AcuI CTGAAG 1 cut(s) 1091
AfaI GTAC 2 cut(s) 1139, 1286
AfeI AGCGCT 1 cut(s) 1104
AfiI CCNNNNNNNGG 2 cut(s) 851, 995
AflII CTTAAG 1 cut(s) 881
AflIII ACRYGT 2 cut(s) 143, 764
AgsI TTSAA 6 cut(s) 289, 713, 1134, 1276, 1371, 1382
AjiI CACGTC 1 cut(s) 522
AjnI CCWGG 1 cut(s) 55
AjuI GAANNNNNNNTTGG 4 cut(s) 64, 96, 1223, 1255
AleI CACNNNNGTG 1 cut(s) 428
Alw21I GWGCWC 5 cut(s) 119, 263, 318, 902, 1010
Alw26I GTCTC 5 cut(s) 299, 347, 1082, 1141, 1302
AlwI GGATC 2 cut(s) 62, 787
AlwNI CAGNNNCTG 2 cut(s) 89, 201
Aor51HI AGCGCT 1 cut(s) 1104
AoxI GGCC 2 cut(s) 227, 927
ApeKI GCWGC 2 cut(s) 920, 939
ApoI RAATTY 3 cut(s) 7, 265, 333
ArsI GACNNNNNNTTYG 2 cut(s) 551, 583
Asp700I GAANNNNTTC 3 cut(s) 145, 1065, 1104
Asp718I GGTACC 1 cut(s) 1284
AspLEI GCGC 1 cut(s) 1105
AspS9I GGNCC 2 cut(s) 59, 325
AsuHPI GGTGA 4 cut(s) 45, 962, 1047, 1204
AvaII GGWCC 2 cut(s) 59, 325
BaeI ACNNNNGTAYC 2 cut(s) 1268, 1301
BalI TGGCCA 1 cut(s) 929
BanI GGYRCC 1 cut(s) 1284
BanII GRGCYC 1 cut(s) 263
BbsI GAAGAC 3 cut(s) 271, 521, 1170
Bbv12I GWGCWC 5 cut(s) 119, 263, 318, 902, 1010
BbvI GCAGC 2 cut(s) 907, 951
BccI CCATC 2 cut(s) 71, 938
BcgI CGANNNNNNTGC 4 cut(s) 364, 398, 928, 962
BciT130I CCWGG 1 cut(s) 57
BclI TGATCA 1 cut(s) 76
BcoDI GTCTC 5 cut(s) 299, 347, 1082, 1141, 1302
BfaI CTAG 3 cut(s) 219, 677, 1070
BfoI RGCGCY 1 cut(s) 1106
BfrI CTTAAG 1 cut(s) 881
BisI GCNGC 3 cut(s) 409, 921, 940
BlsI GCNGC 3 cut(s) 410, 922, 941
Bme1390I CCNGG 1 cut(s) 57
Bme18I GGWCC 2 cut(s) 59, 325
BmgBI CACGTC 1 cut(s) 522
BmgT120I GGNCC 2 cut(s) 59, 325
BmiI GGNNCC 4 cut(s) 61, 607, 843, 1286
BmrFI CCNGG 1 cut(s) 57
BmsI GCATC 2 cut(s) 95, 1006
BpiI GAAGAC 3 cut(s) 271, 521, 1170
BpmI CTGGAG 2 cut(s) 180, 371
BpuEI CTTGAG 1 cut(s) 1064
Bsa29I ATCGAT 1 cut(s) 66
BsaWI WCCGGW 1 cut(s) 97
BsaXI ACNNNNNCTCC 2 cut(s) 597, 627
Bsc4I CCNNNNNNNGG 2 cut(s) 851, 995
Bse1I ACTGG 1 cut(s) 781
Bse3DI GCAATG 2 cut(s) 607, 1327
BseBI CCWGG 1 cut(s) 57
BseCI ATCGAT 1 cut(s) 66
BseGI GGATG 1 cut(s) 1345
BseLI CCNNNNNNNGG 2 cut(s) 851, 995
BseMI GCAATG 2 cut(s) 607, 1327
BseMII CTCAG 4 cut(s) 198, 682, 1236, 1313
BseNI ACTGG 1 cut(s) 781
BseRI GAGGAG 1 cut(s) 177
BseXI GCAGC 2 cut(s) 907, 951
BsgI GTGCAG 3 cut(s) 187, 648, 821
Bsh1236I CGCG 1 cut(s) 766
BshFI GGCC 2 cut(s) 229, 929
BshNI GGYRCC 1 cut(s) 1284
BshVI ATCGAT 1 cut(s) 66
BsiHKAI GWGCWC 5 cut(s) 119, 263, 318, 902, 1010
BsiSI CCGG 1 cut(s) 98
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 2 cut(s) 851, 995
BsmAI GTCTC 5 cut(s) 299, 347, 1082, 1141, 1302
BsmBI CGTCTC 3 cut(s) 347, 1082, 1141
BsmFI GGGAC 1 cut(s) 45
BsnI GGCC 2 cut(s) 229, 929
Bsp1286I GDGCHC 5 cut(s) 119, 263, 318, 902, 1010
Bsp1407I TGTACA 1 cut(s) 1137
Bsp143I GATC 4 cut(s) 67, 76, 779, 1072
BspACI CCGC 6 cut(s) 323, 408, 426, 771, 996, 1048
BspANI GGCC 2 cut(s) 229, 929
BspCNI CTCAG 4 cut(s) 199, 681, 1237, 1312
BspDI ATCGAT 1 cut(s) 66
BspFNI CGCG 1 cut(s) 766
BspLI GGNNCC 4 cut(s) 61, 607, 843, 1286
BspPI GGATC 2 cut(s) 62, 787
BspQI GCTCTTC 1 cut(s) 1271
BspT107I GGYRCC 1 cut(s) 1284
BspTI CTTAAG 1 cut(s) 881
BsrBI CCGCTC 1 cut(s) 996
BsrDI GCAATG 2 cut(s) 607, 1327
BsrGI TGTACA 1 cut(s) 1137
BsrI ACTGG 1 cut(s) 781
BssMI GATC 4 cut(s) 67, 76, 779, 1072
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 4 cut(s) 277, 469, 613, 1284
Bst6I CTCTTC 4 cut(s) 521, 807, 990, 1271
BstAFI CTTAAG 1 cut(s) 881
BstAPI GCANNNNNTGC 1 cut(s) 201
BstAUI TGTACA 1 cut(s) 1137
BstC8I GCNNGC 5 cut(s) 259, 663, 890, 1006, 1113
BstDEI CTNAG 6 cut(s) 207, 485, 596, 668, 1245, 1299
BstEII GGTNACC 1 cut(s) 825
BstF5I GGATG 1 cut(s) 1345
BstFNI CGCG 1 cut(s) 766
BstH2I RGCGCY 1 cut(s) 1106
BstHHI GCGC 1 cut(s) 1105
BstKTI GATC 4 cut(s) 70, 79, 782, 1075
BstMAI GTCTC 5 cut(s) 299, 347, 1082, 1141, 1302
BstMBI GATC 4 cut(s) 67, 76, 779, 1072
BstMWI GCNNNNNNNGC 4 cut(s) 201, 414, 926, 1250
BstNI CCWGG 1 cut(s) 57
BstNSI RCATGY 1 cut(s) 147
BstPI GGTNACC 1 cut(s) 825
BstSCI CCNGG 1 cut(s) 55
BstUI CGCG 1 cut(s) 766
BstV1I GCAGC 2 cut(s) 907, 951
BstV2I GAAGAC 3 cut(s) 271, 521, 1170
BstXI CCANNNNNNTGG 1 cut(s) 691
Bsu15I ATCGAT 1 cut(s) 66
BsuRI GGCC 2 cut(s) 229, 929
BsuTUI ATCGAT 1 cut(s) 66
BtrI CACGTC 1 cut(s) 522
BtsCI GGATG 1 cut(s) 1345
BtsI GCAGTG 1 cut(s) 435
BtsIMutI CAGTG 3 cut(s) 204, 435, 609
Cac8I GCNNGC 5 cut(s) 259, 663, 890, 1006, 1113
CaiI CAGNNNCTG 2 cut(s) 89, 201
CfoI GCGC 1 cut(s) 1105
Cfr13I GGNCC 2 cut(s) 59, 325
ClaI ATCGAT 1 cut(s) 66
CseI GACGC 1 cut(s) 1158
CsiI ACCWGGT 1 cut(s) 55
Csp6I GTAC 2 cut(s) 1138, 1285
CviAII CATG 8 cut(s) 144, 622, 685, 976, 1033, 1097, 1143, 1182
CviQI GTAC 2 cut(s) 1138, 1285
DdeI CTNAG 6 cut(s) 207, 485, 596, 668, 1245, 1299
DpnI GATC 4 cut(s) 69, 78, 781, 1074
DpnII GATC 4 cut(s) 67, 76, 779, 1072
EaeI YGGCCR 1 cut(s) 927
Eam1104I CTCTTC 4 cut(s) 521, 807, 990, 1271
EarI CTCTTC 4 cut(s) 521, 807, 990, 1271
Ecl136II GAGCTC 1 cut(s) 261
Eco24I GRGCYC 1 cut(s) 263
Eco32I GATATC 1 cut(s) 646
Eco47I GGWCC 2 cut(s) 59, 325
Eco47III AGCGCT 1 cut(s) 1104
Eco53kI GAGCTC 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 1091
Eco91I GGTNACC 1 cut(s) 825
EcoICRI GAGCTC 1 cut(s) 261
EcoO65I GGTNACC 1 cut(s) 825
EcoRII CCWGG 1 cut(s) 55
EcoRV GATATC 1 cut(s) 646
EcoT38I GRGCYC 1 cut(s) 263
Esp3I CGTCTC 3 cut(s) 347, 1082, 1141
FaeI CATG 8 cut(s) 147, 625, 688, 979, 1036, 1100, 1146, 1185
FalI AAGNNNNNCTT 2 cut(s) 1146, 1178
FaqI GGGAC 1 cut(s) 45
FatI CATG 8 cut(s) 143, 621, 684, 975, 1032, 1096, 1142, 1181
FbaI TGATCA 1 cut(s) 76
FblI GTMKAC 2 cut(s) 631, 1431
Fnu4HI GCNGC 3 cut(s) 409, 921, 940
FokI GGATG 1 cut(s) 1352
FriOI GRGCYC 1 cut(s) 263
Fsp4HI GCNGC 3 cut(s) 409, 921, 940
FspBI CTAG 3 cut(s) 219, 677, 1070
GlaI GCGC 1 cut(s) 1104
GluI GCNGC 3 cut(s) 409, 921, 940
GsuI CTGGAG 2 cut(s) 180, 371
HaeII RGCGCY 1 cut(s) 1106
HaeIII GGCC 2 cut(s) 229, 929
HapII CCGG 1 cut(s) 98
HgaI GACGC 1 cut(s) 1158
HhaI GCGC 1 cut(s) 1105
Hin1II CATG 8 cut(s) 147, 625, 688, 979, 1036, 1100, 1146, 1185
Hin6I GCGC 1 cut(s) 1103
HinP1I GCGC 1 cut(s) 1103
HincII GTYRAC 1 cut(s) 762
HindII GTYRAC 1 cut(s) 762
HindIII AAGCTT 4 cut(s) 377, 745, 1128, 1155
HpaII CCGG 1 cut(s) 98
HphI GGTGA 4 cut(s) 45, 962, 1047, 1204
Hpy166II GTNNAC 5 cut(s) 103, 632, 762, 1140, 1432
Hpy188I TCNGA 9 cut(s) 91, 151, 175, 300, 340, 671, 862, 1093, 1302
Hpy8I GTNNAC 5 cut(s) 103, 632, 762, 1140, 1432
Hpy99I CGWCG 2 cut(s) 35, 523
HpyAV CCTTC 5 cut(s) 355, 554, 734, 859, 1376
HpyCH4III ACNGT 4 cut(s) 277, 469, 613, 1284
HpyCH4IV ACGT 1 cut(s) 521
HpyCH4V TGCA 8 cut(s) 204, 423, 665, 734, 802, 1019, 1320, 1332
HpyF10VI GCNNNNNNNGC 4 cut(s) 201, 414, 926, 1250
HpyF3I CTNAG 6 cut(s) 207, 485, 596, 668, 1245, 1299
HpySE526I ACGT 1 cut(s) 521
Hsp92II CATG 8 cut(s) 147, 625, 688, 979, 1036, 1100, 1146, 1185
HspAI GCGC 1 cut(s) 1103
KpnI GGTACC 1 cut(s) 1288
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 4 cut(s) 67, 76, 779, 1072
LguI GCTCTTC 1 cut(s) 1271
LmnI GCTCC 1 cut(s) 605
Lsp1109I GCAGC 2 cut(s) 907, 951
LweI GCATC 2 cut(s) 95, 1006
MabI ACCWGGT 1 cut(s) 55
MaeI CTAG 3 cut(s) 219, 677, 1070
MaeII ACGT 1 cut(s) 521
MaeIII GTNAC 6 cut(s) 51, 430, 557, 585, 825, 1223
MalI GATC 4 cut(s) 69, 78, 781, 1074
MbiI CCGCTC 1 cut(s) 996
MboI GATC 4 cut(s) 67, 76, 779, 1072
MhlI GDGCHC 5 cut(s) 119, 263, 318, 902, 1010
MlsI TGGCCA 1 cut(s) 929
MluCI AATT 7 cut(s) 7, 265, 333, 538, 1168, 1209, 1292
MluI ACGCGT 1 cut(s) 764
MluNI TGGCCA 1 cut(s) 929
MlyI GAGTC 1 cut(s) 1265
MmeI TCCRAC 3 cut(s) 270, 296, 1324
MnlI CCTC 9 cut(s) 155, 158, 166, 202, 610, 688, 798, 846, 1439
Mox20I TGGCCA 1 cut(s) 929
MroXI GAANNNNTTC 3 cut(s) 145, 1065, 1104
MscI TGGCCA 1 cut(s) 929
MseI TTAA 5 cut(s) 236, 882, 1164, 1202, 1395
MslI CAYNNNNRTG 2 cut(s) 428, 689
Msp20I TGGCCA 1 cut(s) 929
MspA1I CMGCKG 1 cut(s) 1111
MspCI CTTAAG 1 cut(s) 881
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 57
MvnI CGCG 1 cut(s) 766
MwoI GCNNNNNNNGC 4 cut(s) 201, 414, 926, 1250
NdeII GATC 4 cut(s) 67, 76, 779, 1072
NlaIII CATG 8 cut(s) 147, 625, 688, 979, 1036, 1100, 1146, 1185
NlaIV GGNNCC 4 cut(s) 61, 607, 843, 1286
NmuCI GTSAC 5 cut(s) 51, 430, 557, 585, 1223
NspI RCATGY 1 cut(s) 147
OliI CACNNNNGTG 1 cut(s) 428
PciI ACATGT 1 cut(s) 143
PciSI GCTCTTC 1 cut(s) 1271
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PdmI GAANNNNTTC 3 cut(s) 145, 1065, 1104
PfeI GAWTC 9 cut(s) 122, 242, 369, 481, 592, 680, 832, 968, 1324
PkrI GCNGC 3 cut(s) 410, 922, 941
PleI GAGTC 1 cut(s) 1264
PpsI GAGTC 1 cut(s) 1264
PscI ACATGT 1 cut(s) 143
Psp124BI GAGCTC 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 55
PspEI GGTNACC 1 cut(s) 825
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 4 cut(s) 61, 607, 843, 1286
PspPI GGNCC 2 cut(s) 59, 325
PstNI CAGNNNCTG 2 cut(s) 89, 201
PvuII CAGCTG 1 cut(s) 1111
RsaI GTAC 2 cut(s) 1139, 1286
RsaNI GTAC 2 cut(s) 1138, 1285
RseI CAYNNNNRTG 2 cut(s) 428, 689
SacI GAGCTC 1 cut(s) 263
SapI GCTCTTC 1 cut(s) 1271
SaqAI TTAA 5 cut(s) 236, 882, 1164, 1202, 1395
SatI GCNGC 3 cut(s) 409, 921, 940
Sau3AI GATC 4 cut(s) 67, 76, 779, 1072
Sau96I GGNCC 2 cut(s) 59, 325
SchI GAGTC 1 cut(s) 1265
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 5 cut(s) 119, 263, 318, 902, 1010
SexAI ACCWGGT 1 cut(s) 55
SfaNI GCATC 2 cut(s) 95, 1006
SinI GGWCC 2 cut(s) 59, 325
SmiMI CAYNNNNRTG 2 cut(s) 428, 689
SmlI CTYRAG 2 cut(s) 881, 1079
SmoI CTYRAG 2 cut(s) 881, 1079
Sse9I AATT 7 cut(s) 7, 265, 333, 538, 1168, 1209, 1292
SsiI CCGC 6 cut(s) 323, 408, 426, 771, 996, 1048
SspMI CTAG 3 cut(s) 219, 677, 1070
SstI GAGCTC 1 cut(s) 263
StyD4I CCNGG 1 cut(s) 55
TaaI ACNGT 4 cut(s) 277, 469, 613, 1284
TaiI ACGT 1 cut(s) 524
TaqI TCGA 7 cut(s) 66, 139, 282, 374, 570, 752, 1027
TasI AATT 7 cut(s) 7, 265, 333, 538, 1168, 1209, 1292
TatI WGTACW 1 cut(s) 1137
TauI GCSGC 1 cut(s) 411
TfiI GAWTC 9 cut(s) 122, 242, 369, 481, 592, 680, 832, 968, 1324
Tru1I TTAA 5 cut(s) 236, 882, 1164, 1202, 1395
Tru9I TTAA 5 cut(s) 236, 882, 1164, 1202, 1395
TscAI CASTG 3 cut(s) 211, 435, 616
TseFI GTSAC 5 cut(s) 51, 430, 557, 585, 1223
TseI GCWGC 2 cut(s) 920, 939
Tsp45I GTSAC 5 cut(s) 51, 430, 557, 585, 1223
TspDTI ATGAA 7 cut(s) 201, 374, 551, 770, 1113, 1170, 1316
TspRI CASTG 3 cut(s) 211, 435, 616
Vha464I CTTAAG 1 cut(s) 881
VpaK11BI GGWCC 2 cut(s) 59, 325
XapI RAATTY 3 cut(s) 7, 265, 333
XbaI TCTAGA 1 cut(s) 1069
XceI RCATGY 1 cut(s) 147
XmiI GTMKAC 2 cut(s) 631, 1431
XmnI GAANNNNTTC 3 cut(s) 145, 1065, 1104
XspI CTAG 3 cut(s) 219, 677, 1070
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.