FvH4_7g14260

Rop guanine nucleotide exchange factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
12608530 .. 12611805
3276 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g14260.t1

Sequence Viewer

Length: 1434 bp
ATGGACAATTCTTTAAGTTCTGATGAAAGTTATGATCTGGGATATCAACCTTCACCTTCTTCTATGGATCAATCAGCAGTTGAAACTTCAACAATGAGTAGTGATTCGTTTCTATGCCGCCGGACTAATTCAGATGTCTCGGCTTTCTCTGAGTCAGTAGGTGATGGCAGCTACTCTGGTGATGCTTCTCCTTCTTGCTGGCCAAATGTGAAATCCAACCTCAGTAACCAAGCTGTCCTCAGCAGACTAGGAATGAAGAAACGTATGAATCTCACAGACGATAAACTCGAAGATCTTGAAGCTATGGATTCAGAACTTGAGTTGATGAAAGAAAGATTTGCAAAGCTTTTGTTGGGTGAAGACATGTCAGGAAGTGGCAAAGGTGTATGCACAGCTGTTACAATCTCAAATTCTGTTACCAACCTCTATGCCACTGTTTTTGGGGCAAATCTAAGGTTAGAGCCTTTGAATCCTGAGAAGAAAGCAATGTGGAAAAGGGAAATGGATTGTCTTTTATCCGTCTGTGATTATATAGTAGAACTCACTCCAGTATCCCAAACTTTACCAAATGGGACATGCGTGGAGATGATGACAAGCAGACCACGATCTGATATTTATATTAACCTTCCAGCTTTGCAAAAGCTTGATGCTATGCTCATTGAAGTGCTTGATAGTTTTCAGGATACCGAGTTCTGGTATGCCGAACAAGGGAGCATTTCATCAAAGTCAACTAGTTCTGCAGCAGCATCAGGATCGTTTCGAAGGATTAGTGTGCAGCGAAGTGAGGATAAATGGTGGGTGCCGGTTCCATGTGCTCCTCCAGGTGGCCTGTCTGAGAAATCAAGGAAGCATTTGAGACACAAACGCGACAGTTGTAATCAAATACACAAAGCAGCCATGGCAATCAACAGCAGCATTCTTTCTGAGATGGAAATTCCGGAGTCATACATGGCAAGTCTTCCAAAGAGCGGAAAAGCTTGTCTGGGAGATTCGATTTACCGATACATGTCTACCTCAGAGAAGTTCTCCCCAGAACATCTTCTCGACTGTCTCCATATAGCTTCTGAACATGAAGCACTTGAACTTGCAGACAGAGTTGAGTCTTCAATGTACACATGGAGACGTAAAGCATGCATGAGTAATTCAAAGTCTTCATGGGTGATGGTAAAGGATCTAATGTCAGAGACAGACAGGAATGATAAAAACCATGTCCTAGCTGAGAGAGCAGAAACCTTGTTGTTCTCTTTGAAGCAGAGATATCCTGAGCTCTCTCAGACATCCTTGGACACATGCAAGATTCAATACAACAAGGATGTGGGGCAAGCAGTACTAGAGAGCTACTCAAGAGTGTTGGAAAGCTTTGCATACAACATTGTTGCTTGGATTGAAGACGTAATTCATGTGGACAGATCGATGAGGAACCAAGACCAGTAG

Protein Analysis

478

Amino Acids

53.41

Weight (kDa)

5.16

Isoelectric Point (pI)

62.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRONE PF03759 104 - 473 6.7e-176 PRONE (Plant-specific Rop nucleotide exchanger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 799
AccBSI CCGCTC 1 cut(s) 969
AccI GTMKAC 1 cut(s) 1010
AccII CGCG 1 cut(s) 867
AccIII TCCGGA 1 cut(s) 937
AciI CCGC 2 cut(s) 118, 969
AclWI GGATC 3 cut(s) 75, 760, 1179
AcoI YGGCCR 1 cut(s) 200
AcsI RAATTY 2 cut(s) 409, 933
AfaI GTAC 2 cut(s) 1112, 1329
AfiI CCNNNNNNNGG 4 cut(s) 693, 708, 824, 968
AflIII ACRYGT 2 cut(s) 363, 1005
AhlI ACTAGT 1 cut(s) 731
AjnI CCWGG 1 cut(s) 820
AloI GAACNNNNNNTCC 2 cut(s) 674, 706
Alw21I GWGCWC 2 cut(s) 817, 1269
Alw26I GTCTC 5 cut(s) 142, 850, 1055, 1114, 1178
AlwI GGATC 3 cut(s) 75, 760, 1179
Aor13HI TCCGGA 1 cut(s) 937
AoxI GGCC 2 cut(s) 200, 826
ApeKI GCWGC 6 cut(s) 168, 740, 743, 775, 893, 912
ApoI RAATTY 2 cut(s) 409, 933
Asp700I GAANNNNTTC 1 cut(s) 1038
AsuHPI GGTGA 5 cut(s) 45, 173, 191, 368, 1171
AsuII TTCGAA 1 cut(s) 760
BaeI ACNNNNGTAYC 2 cut(s) 534, 567
BalI TGGCCA 1 cut(s) 202
BanI GGYRCC 1 cut(s) 799
BanII GRGCYC 1 cut(s) 1269
BbsI GAAGAC 5 cut(s) 366, 950, 1095, 1143, 1395
Bbv12I GWGCWC 2 cut(s) 817, 1269
BbvCI CCTCAGC 1 cut(s) 239
BbvI GCAGC 6 cut(s) 180, 752, 755, 787, 905, 924
BccI CCATC 3 cut(s) 158, 922, 1156
BcgI CGANNNNNNTGC 2 cut(s) 735, 769
BciT130I CCWGG 1 cut(s) 822
BciVI GTATCC 2 cut(s) 562, 676
BcoDI GTCTC 5 cut(s) 142, 850, 1055, 1114, 1178
BcuI ACTAGT 1 cut(s) 731
BfaI CTAG 4 cut(s) 248, 732, 1214, 1331
BfmI CTRYAG 1 cut(s) 738
BfuI GTATCC 2 cut(s) 562, 676
BglII AGATCT 1 cut(s) 292
BisI GCNGC 7 cut(s) 118, 169, 741, 744, 776, 894, 913
BlsI GCNGC 7 cut(s) 119, 170, 742, 745, 777, 895, 914
BmcAI AGTACT 1 cut(s) 1329
Bme1390I CCNGG 1 cut(s) 822
BmiI GGNNCC 3 cut(s) 801, 807, 1421
BmrFI CCNGG 1 cut(s) 822
BmsI GCATC 3 cut(s) 172, 637, 755
BpiI GAAGAC 5 cut(s) 366, 950, 1095, 1143, 1395
BplI GAGNNNNNCTC 4 cut(s) 1010, 1042, 1325, 1357
BpmI CTGGAG 2 cut(s) 531, 804
Bpu10I CCTNAGC 2 cut(s) 239, 1263
Bpu14I TTCGAA 1 cut(s) 760
BpuEI CTTGAG 2 cut(s) 338, 1327
Bsa29I ATCGAT 1 cut(s) 1412
BsaJI CCNNGG 2 cut(s) 897, 1281
BsaWI WCCGGW 1 cut(s) 937
Bsc4I CCNNNNNNNGG 4 cut(s) 693, 708, 824, 968
Bse118I RCCGGY 1 cut(s) 802
Bse1I ACTGG 2 cut(s) 548, 1429
Bse3DI GCAATG 1 cut(s) 492
BseAI TCCGGA 1 cut(s) 937
BseBI CCWGG 1 cut(s) 822
BseCI ATCGAT 1 cut(s) 1412
BseDI CCNNGG 2 cut(s) 897, 1281
BseGI GGATG 2 cut(s) 1277, 1318
BseLI CCNNNNNNNGG 4 cut(s) 693, 708, 824, 968
BseMI GCAATG 1 cut(s) 492
BseNI ACTGG 2 cut(s) 548, 1429
BseRI GAGGAG 1 cut(s) 807
BseXI GCAGC 6 cut(s) 180, 752, 755, 787, 905, 924
BsgI GTGCAG 1 cut(s) 794
Bsh1236I CGCG 1 cut(s) 867
BshFI GGCC 2 cut(s) 202, 828
BshNI GGYRCC 1 cut(s) 799
BshVI ATCGAT 1 cut(s) 1412
BsiHKAI GWGCWC 2 cut(s) 817, 1269
BsiSI CCGG 3 cut(s) 121, 803, 938
BslFI GGGAC 1 cut(s) 586
BslI CCNNNNNNNGG 4 cut(s) 693, 708, 824, 968
BsmAI GTCTC 5 cut(s) 142, 850, 1055, 1114, 1178
BsmBI CGTCTC 1 cut(s) 1114
BsmFI GGGAC 1 cut(s) 586
BsmI GAATGC 1 cut(s) 915
BsnI GGCC 2 cut(s) 202, 828
Bsp119I TTCGAA 1 cut(s) 760
Bsp1286I GDGCHC 2 cut(s) 817, 1269
Bsp13I TCCGGA 1 cut(s) 937
Bsp1407I TGTACA 1 cut(s) 1110
Bsp143I GATC 7 cut(s) 34, 67, 292, 605, 752, 1171, 1409
Bsp19I CCATGG 1 cut(s) 897
BspACI CCGC 2 cut(s) 118, 969
BspANI GGCC 2 cut(s) 202, 828
BspDI ATCGAT 1 cut(s) 1412
BspEI TCCGGA 1 cut(s) 937
BspFNI CGCG 1 cut(s) 867
BspLI GGNNCC 3 cut(s) 801, 807, 1421
BspMAI CTGCAG 1 cut(s) 742
BspPI GGATC 3 cut(s) 75, 760, 1179
BspT104I TTCGAA 1 cut(s) 760
BspT107I GGYRCC 1 cut(s) 799
BsrBI CCGCTC 1 cut(s) 969
BsrDI GCAATG 1 cut(s) 492
BsrFI RCCGGY 1 cut(s) 802
BsrGI TGTACA 1 cut(s) 1110
BsrI ACTGG 2 cut(s) 548, 1429
BssAI RCCGGY 1 cut(s) 802
BssECI CCNNGG 2 cut(s) 897, 1281
BssMI GATC 7 cut(s) 34, 67, 292, 605, 752, 1171, 1409
BssT1I CCWWGG 2 cut(s) 897, 1281
Bst2UI CCWGG 1 cut(s) 822
Bst4CI ACNGT 3 cut(s) 436, 872, 1049
BstAUI TGTACA 1 cut(s) 1110
BstBI TTCGAA 1 cut(s) 760
BstC8I GCNNGC 3 cut(s) 200, 1132, 1323
BstDSI CCRYGG 1 cut(s) 897
BstF5I GGATG 2 cut(s) 1277, 1318
BstFNI CGCG 1 cut(s) 867
BstKTI GATC 7 cut(s) 37, 70, 295, 608, 755, 1174, 1412
BstMAI GTCTC 5 cut(s) 142, 850, 1055, 1114, 1178
BstMBI GATC 7 cut(s) 34, 67, 292, 605, 752, 1171, 1409
BstMWI GCNNNNNNNGC 2 cut(s) 899, 1223
BstNI CCWGG 1 cut(s) 822
BstNSI RCATGY 5 cut(s) 367, 579, 1009, 1134, 1293
BstSCI CCNGG 1 cut(s) 820
BstSFI CTRYAG 1 cut(s) 738
BstUI CGCG 1 cut(s) 867
BstV1I GCAGC 6 cut(s) 180, 752, 755, 787, 905, 924
BstV2I GAAGAC 5 cut(s) 366, 950, 1095, 1143, 1395
BstX2I RGATCY 2 cut(s) 292, 1171
BstYI RGATCY 2 cut(s) 292, 1171
Bsu15I ATCGAT 1 cut(s) 1412
BsuI GTATCC 2 cut(s) 562, 676
BsuRI GGCC 2 cut(s) 202, 828
BsuTUI ATCGAT 1 cut(s) 1412
BtgI CCRYGG 1 cut(s) 897
BtsCI GGATG 2 cut(s) 1277, 1318
BtsIMutI CAGTG 1 cut(s) 432
Cac8I GCNNGC 3 cut(s) 200, 1132, 1323
Cfr10I RCCGGY 1 cut(s) 802
ClaI ATCGAT 1 cut(s) 1412
Csp6I GTAC 2 cut(s) 1111, 1328
CspCI CAANNNNNGTGG 2 cut(s) 421, 456
CviQI GTAC 2 cut(s) 1111, 1328
DpnI GATC 7 cut(s) 36, 69, 294, 607, 754, 1173, 1411
DpnII GATC 7 cut(s) 34, 67, 292, 605, 752, 1171, 1409
EaeI YGGCCR 1 cut(s) 200
Ecl136II GAGCTC 1 cut(s) 1267
Eco130I CCWWGG 2 cut(s) 897, 1281
Eco24I GRGCYC 1 cut(s) 1269
Eco32I GATATC 2 cut(s) 44, 1259
Eco53kI GAGCTC 1 cut(s) 1267
EcoICRI GAGCTC 1 cut(s) 1267
EcoRII CCWGG 1 cut(s) 820
EcoRV GATATC 2 cut(s) 44, 1259
EcoT14I CCWWGG 2 cut(s) 897, 1281
EcoT22I ATGCAT 1 cut(s) 1136
EcoT38I GRGCYC 1 cut(s) 1269
ErhI CCWWGG 2 cut(s) 897, 1281
Esp3I CGTCTC 1 cut(s) 1114
FaqI GGGAC 1 cut(s) 586
FblI GTMKAC 1 cut(s) 1010
Fnu4HI GCNGC 7 cut(s) 118, 169, 741, 744, 776, 894, 913
FokI GGATG 2 cut(s) 1264, 1325
FriOI GRGCYC 1 cut(s) 1269
Fsp4HI GCNGC 7 cut(s) 118, 169, 741, 744, 776, 894, 913
FspBI CTAG 4 cut(s) 248, 732, 1214, 1331
GluI GCNGC 7 cut(s) 118, 169, 741, 744, 776, 894, 913
GsuI CTGGAG 2 cut(s) 531, 804
HaeIII GGCC 2 cut(s) 202, 828
HapII CCGG 3 cut(s) 121, 803, 938
HincII GTYRAC 1 cut(s) 729
HindII GTYRAC 1 cut(s) 729
HindIII AAGCTT 4 cut(s) 344, 641, 975, 1357
HinfI GANTC 9 cut(s) 104, 152, 268, 308, 469, 941, 989, 1100, 1297
HpaII CCGG 3 cut(s) 121, 803, 938
HphI GGTGA 5 cut(s) 45, 173, 191, 368, 1171
Hpy166II GTNNAC 4 cut(s) 729, 1011, 1113, 1405
Hpy188III TCNNGA 9 cut(s) 296, 369, 473, 680, 750, 938, 1043, 1262, 1344
Hpy8I GTNNAC 4 cut(s) 729, 1011, 1113, 1405
HpyAV CCTTC 5 cut(s) 60, 66, 201, 635, 756
HpyCH4III ACNGT 3 cut(s) 436, 872, 1049
HpyCH4IV ACGT 3 cut(s) 262, 1123, 1392
HpyCH4V TGCA 9 cut(s) 341, 390, 637, 740, 775, 1088, 1134, 1293, 1364
HpyF10VI GCNNNNNNNGC 2 cut(s) 899, 1223
HpySE526I ACGT 3 cut(s) 262, 1123, 1392
Kpn2I TCCGGA 1 cut(s) 937
Kzo9I GATC 7 cut(s) 34, 67, 292, 605, 752, 1171, 1409
LmnI GCTCC 2 cut(s) 711, 820
Lsp1109I GCAGC 6 cut(s) 180, 752, 755, 787, 905, 924
LweI GCATC 3 cut(s) 172, 637, 755
MaeI CTAG 4 cut(s) 248, 732, 1214, 1331
MaeII ACGT 3 cut(s) 262, 1123, 1392
MaeIII GTNAC 3 cut(s) 224, 397, 415
MalI GATC 7 cut(s) 36, 69, 294, 607, 754, 1173, 1411
MbiI CCGCTC 1 cut(s) 969
MboI GATC 7 cut(s) 34, 67, 292, 605, 752, 1171, 1409
MflI RGATCY 2 cut(s) 292, 1171
MhlI GDGCHC 2 cut(s) 817, 1269
MlsI TGGCCA 1 cut(s) 202
MluCI AATT 6 cut(s) 7, 127, 409, 933, 1141, 1395
MluNI TGGCCA 1 cut(s) 202
MlyI GAGTC 3 cut(s) 161, 950, 1109
MmeI TCCRAC 2 cut(s) 240, 1332
MnlI CCTC 7 cut(s) 230, 248, 434, 778, 828, 1024, 1410
Mox20I TGGCCA 1 cut(s) 202
Mph1103I ATGCAT 1 cut(s) 1136
MroI TCCGGA 1 cut(s) 937
MroXI GAANNNNTTC 1 cut(s) 1038
MscI TGGCCA 1 cut(s) 202
MseI TTAA 2 cut(s) 14, 621
MslI CAYNNNNRTG 1 cut(s) 662
Msp20I TGGCCA 1 cut(s) 202
MspA1I CMGCKG 1 cut(s) 395
MspI CCGG 3 cut(s) 121, 803, 938
MspR9I CCNGG 1 cut(s) 822
Mva1269I GAATGC 1 cut(s) 915
MvaI CCWGG 1 cut(s) 822
MvnI CGCG 1 cut(s) 867
MwoI GCNNNNNNNGC 2 cut(s) 899, 1223
NcoI CCATGG 1 cut(s) 897
NdeII GATC 7 cut(s) 34, 67, 292, 605, 752, 1171, 1409
NlaIV GGNNCC 3 cut(s) 801, 807, 1421
NmeAIII GCCGAG 1 cut(s) 119
NsiI ATGCAT 1 cut(s) 1136
NspI RCATGY 5 cut(s) 367, 579, 1009, 1134, 1293
NspV TTCGAA 1 cut(s) 760
PaeI GCATGC 1 cut(s) 1134
PciI ACATGT 2 cut(s) 363, 1005
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PctI GAATGC 1 cut(s) 915
PdmI GAANNNNTTC 1 cut(s) 1038
PfeI GAWTC 6 cut(s) 104, 268, 308, 469, 989, 1297
PkrI GCNGC 7 cut(s) 119, 170, 742, 745, 777, 895, 914
PleI GAGTC 3 cut(s) 160, 949, 1108
PpsI GAGTC 3 cut(s) 160, 949, 1108
PscI ACATGT 2 cut(s) 363, 1005
Psp124BI GAGCTC 1 cut(s) 1269
Psp6I CCWGG 1 cut(s) 820
PspGI CCWGG 1 cut(s) 820
PspN4I GGNNCC 3 cut(s) 801, 807, 1421
PstI CTGCAG 1 cut(s) 742
PsuI RGATCY 2 cut(s) 292, 1171
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 2 cut(s) 1112, 1329
RsaNI GTAC 2 cut(s) 1111, 1328
RseI CAYNNNNRTG 1 cut(s) 662
SacI GAGCTC 1 cut(s) 1269
SaqAI TTAA 2 cut(s) 14, 621
SatI GCNGC 7 cut(s) 118, 169, 741, 744, 776, 894, 913
Sau3AI GATC 7 cut(s) 34, 67, 292, 605, 752, 1171, 1409
ScaI AGTACT 1 cut(s) 1329
SchI GAGTC 3 cut(s) 161, 950, 1109
ScrFI CCNGG 1 cut(s) 822
SduI GDGCHC 2 cut(s) 817, 1269
SfaNI GCATC 3 cut(s) 172, 637, 755
SfcI CTRYAG 1 cut(s) 738
SfuI TTCGAA 1 cut(s) 760
SmiMI CAYNNNNRTG 1 cut(s) 662
SmlI CTYRAG 2 cut(s) 317, 1342
SmoI CTYRAG 2 cut(s) 317, 1342
SpeI ACTAGT 1 cut(s) 731
SphI GCATGC 1 cut(s) 1134
Sse9I AATT 6 cut(s) 7, 127, 409, 933, 1141, 1395
SsiI CCGC 2 cut(s) 118, 969
SspMI CTAG 4 cut(s) 248, 732, 1214, 1331
SstI GAGCTC 1 cut(s) 1269
StyD4I CCNGG 1 cut(s) 820
StyI CCWWGG 2 cut(s) 897, 1281
TaaI ACNGT 3 cut(s) 436, 872, 1049
TaiI ACGT 3 cut(s) 265, 1126, 1395
TaqI TCGA 5 cut(s) 288, 760, 992, 1044, 1412
TasI AATT 6 cut(s) 7, 127, 409, 933, 1141, 1395
TatI WGTACW 2 cut(s) 1110, 1327
TauI GCSGC 1 cut(s) 120
TfiI GAWTC 6 cut(s) 104, 268, 308, 469, 989, 1297
Tru1I TTAA 2 cut(s) 14, 621
Tru9I TTAA 2 cut(s) 14, 621
TscAI CASTG 1 cut(s) 439
TseI GCWGC 6 cut(s) 168, 740, 743, 775, 893, 912
TspDTI ATGAA 8 cut(s) 39, 269, 281, 341, 708, 1086, 1143, 1388
TspGWI ACGGA 1 cut(s) 508
TspRI CASTG 1 cut(s) 439
XapI RAATTY 2 cut(s) 409, 933
XceI RCATGY 5 cut(s) 367, 579, 1009, 1134, 1293
XmiI GTMKAC 1 cut(s) 1010
XmnI GAANNNNTTC 1 cut(s) 1038
XspI CTAG 4 cut(s) 248, 732, 1214, 1331
ZrmI AGTACT 1 cut(s) 1329
Zsp2I ATGCAT 1 cut(s) 1136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.