Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002518

Physical Location & Seq

Genomic Coordinates Forward (+)

35225580 .. 35228842

Gene Structure 3263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0245800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGTCAGACTACCTTCCCGAAGAAATCATACACAAAATCCTGTTGAAGTTGCCTGTCAAAACCCTAATCAAATCCACCCTCGTCTGCAAGTCATGGAAGTCACTCATCAAATCCTCTACCTTCATTCAGTCCCATCTCCGCACCACAATCGACTCCAACGACCAAAACGACTCTCACCTCCTTCTTCTCAGCGCTTCCTCTTACAACCGCAGAGATGAAACTAGTCATCAGCATCACTGGTTGCATTGGGATAGCCCCGAATTCGGTGAATACTCCATGCTATCTACTCCAGTCATTTTCTTGAAAAACAAACCCGTTTCCGATCTCGGTGTGGTCGGAACTAGTAATGGGTTGGTATGCCTTGAGGTTGATCAGTTCTATAGTGATCGTTCTCCCACCTTGATTTGGAACCCATCTATCAGAAAAGTTGTCATGTTGCCTACACCACCTGTCTGTTTTACCTCCACCAAGTATGACAAGTACACAACGCATGGCTTTGGCTATGATGCACATTCCAATGACTACAAGATTTTAAGAGTTGTGACTCTTCTTGATGATCATTCAGACTTGTCCCGGTTTGCAACCGCGGTTCAGGTTTACTCCTTAGCCAGGGGATCCTGGAAGAGTTTTAGTGCTTCGGTTATACCTGTGGATTTGCAGGGTGGTTCCGAACGTCCTGCTTTTGTTAATGGTAATTTCCATACGCTTGAAGCCCGTTTAAGTGTGTATTACAATGACCATTACGAGGAGCACCATAAGTGTGGCGGAGACTTGTTCATTGGCACCTTCAATCTGGCAACTGAAGAATTTGGCGAGATAAGGAGACCGGAAGCTTTGCGAGAAGACAGATGCTCTATATCAAGATATGGGGACTCTCTTGCTTTGATTAAGCATTATAATTATGATTTCAGAGATCTAGTTAATCGCGGTTGTGACATTTGGGTTATGAAACAATATGGTGTTGCAGAGTCGTGGACTTATTTGTTCAATATATCTGTGGTTCAGGCTAGTATATATGGTTTTAAAAGATGTGGGGAAGTTGTGCTAATGGAGAATAACGAGCGTGGTCGGTCAAGAATGATTTCGTTCGATCCTAAGACTAATCAAGTTAAAGCTTTTGGAATTGAGGATTATATTTACTACTTCATGGATTCTTTTGTAGAGAGTCTCGTCTTGCTTGATCACGCCAATGCCATTTCTTACCAAGTAGCAAGGACGAAAAAAGTAGGATGGCGACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016592 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040034 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070013 GO:0071704 GO:0090213 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med12

Protein Analysis

413

Amino Acids

47.42

Weight (kDa)

6.6

Isoelectric Point (pI)

42.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	4 - 39	9.3e-08	F-box-like
F-box	PF00646	5 - 41	1.3e-09	F-box domain
b-prop_At3g26010-like	PF24750	96 - 254	4.8e-06	F-box protein At3g26010-like, beta-propeller
FBA_3	PF08268	111 - 380	3e-19	F-box associated beta propeller domain
FBA_1	PF07734	113 - 377	7.1e-19	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09190
fragaria_vesca	FvH4_1g08040
malus_domestica	MD02G1085000.v1.1
prunus_persica	Prupe.7G204600_v2.0.a1
pyrus_communis	pycom02g06780 pycom02g20400
rosa_chinensis	RchiOBHm_Chr1g0349371 RchiOBHm_Chr1g0365421 RchiOBHm_Chr2g0094071 RchiOBHm_Chr2g0100501 RchiOBHm_Chr2g0145241 RchiOBHm_Chr5g0027681
rosa_laevigata	RLG00000016453 RLG00000016978 RLG00000028565
rosa_multiflora	Rmu_sc0000528.1_g000021 Rmu_sc0001942.1_g000078 Rmu_sc0001989.1_g000005 Rmu_sc0001989.1_g000006 Rmu_sc0002834.1_g000001 Rmu_sc0010460.1_g000009 Rmu_sc0015757.1_g000001 Rmu_sc0023774.1_g000001 Rmu_ssc0000469.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065660 Rroxscaffold_2G00147500
rosa_rugosa	Rorug01G0191200 Rorug01G0245800 Rorug01G0404500 Rorug02G0040700 Rorug02G0042900 Rorug02G0088700 Rorug02G0306900 Rorug02G0425200 RorugPtG0000800
rosa_samantha	Rh1BG121500 Rh2BG141500 Rh2BG455200 Rh2CG090800 Rh2CG143700 Rh2DG465200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	897
AccB1I	GGYRCC	1 cut(s)	782
AccII	CGCG	2 cut(s)	587, 927
AciI	CCGC	6 cut(s)	139, 208, 585, 587, 765, 927
AclWI	GGATC	3 cut(s)	609, 622, 1085
AcsI	RAATTY	2 cut(s)	260, 806
AcuI	CTGAAG	1 cut(s)	822
AfaI	GTAC	1 cut(s)	482
AfeI	AGCGCT	1 cut(s)	193
AfiI	CCNNNNNNNGG	4 cut(s)	263, 405, 609, 745
AgsI	TTSAA	5 cut(s)	46, 304, 710, 790, 988
AhlI	ACTAGT	2 cut(s)	221, 341
AjnI	CCWGG	2 cut(s)	608, 617
AluBI	AGCT	2 cut(s)	833, 1115
AluI	AGCT	2 cut(s)	833, 1115
Alw21I	GWGCWC	1 cut(s)	753
Alw26I	GTCTC	3 cut(s)	762, 817, 1172
AlwI	GGATC	3 cut(s)	609, 622, 1085
Aor51HI	AGCGCT	1 cut(s)	193
ApoI	RAATTY	2 cut(s)	260, 806
Asp700I	GAANNNNTTC	1 cut(s)	1081
AspLEI	GCGC	1 cut(s)	194
AsuC2I	CCSGG	1 cut(s)	574
AsuHPI	GGTGA	2 cut(s)	167, 278
BamHI	GGATCC	1 cut(s)	614
BanI	GGYRCC	1 cut(s)	782
BarI	GAAGNNNNNNTAC	2 cut(s)	12, 44
BbsI	GAAGAC	1 cut(s)	849
Bbv12I	GWGCWC	1 cut(s)	753
BccI	CCATC	3 cut(s)	141, 421, 1224
BcgI	CGANNNNNNTGC	4 cut(s)	130, 164, 659, 693
BciT130I	CCWGG	2 cut(s)	610, 619
BclI	TGATCA	3 cut(s)	370, 556, 1180
BcnI	CCSGG	1 cut(s)	574
BcoDI	GTCTC	3 cut(s)	762, 817, 1172
BcuI	ACTAGT	2 cut(s)	221, 341
BfaI	CTAG	4 cut(s)	222, 342, 917, 1008
BfmI	CTRYAG	1 cut(s)	379
BfoI	RGCGCY	1 cut(s)	195
BglII	AGATCT	1 cut(s)	913
Bme1390I	CCNGG	3 cut(s)	574, 610, 619
BmiI	GGNNCC	4 cut(s)	410, 616, 667, 784
BmrFI	CCNGG	3 cut(s)	574, 610, 619
BmsI	GCATC	3 cut(s)	241, 496, 839
BpiI	GAAGAC	1 cut(s)	849
BpmI	CTGGAG	1 cut(s)	273
Bpu10I	CCTNAGC	1 cut(s)	604
BpuEI	CTTGAG	1 cut(s)	383
BpuMI	CCSGG	1 cut(s)	574
BsaI	GGTCTC	1 cut(s)	817
BsaJI	CCNNGG	2 cut(s)	585, 609
BsaWI	WCCGGW	1 cut(s)	826
Bsc4I	CCNNNNNNNGG	4 cut(s)	263, 405, 609, 745
Bse1I	ACTGG	2 cut(s)	242, 290
BseBI	CCWGG	2 cut(s)	610, 619
BseDI	CCNNGG	2 cut(s)	585, 609
BseGI	GGATG	1 cut(s)	1235
BseLI	CCNNNNNNNGG	4 cut(s)	263, 405, 609, 745
BseMII	CTCAG	1 cut(s)	202
BseNI	ACTGG	2 cut(s)	242, 290
BseRI	GAGGAG	1 cut(s)	761
Bsh1236I	CGCG	2 cut(s)	587, 927
BshNI	GGYRCC	1 cut(s)	782
BsiHKAI	GWGCWC	1 cut(s)	753
BsiSI	CCGG	2 cut(s)	574, 827
BslFI	GGGAC	3 cut(s)	115, 556, 884
BslI	CCNNNNNNNGG	4 cut(s)	263, 405, 609, 745
BsmAI	GTCTC	3 cut(s)	762, 817, 1172
BsmFI	GGGAC	3 cut(s)	115, 556, 884
Bso31I	GGTCTC	1 cut(s)	817
Bsp1286I	GDGCHC	1 cut(s)	753
Bsp143I	GATC	8 cut(s)	322, 370, 385, 556, 614, 913, 1090, 1180
BspACI	CCGC	6 cut(s)	139, 208, 585, 587, 765, 927
BspCNI	CTCAG	1 cut(s)	201
BspFNI	CGCG	2 cut(s)	587, 927
BspLI	GGNNCC	4 cut(s)	410, 616, 667, 784
BspPI	GGATC	3 cut(s)	609, 622, 1085
BspT107I	GGYRCC	1 cut(s)	782
BspTNI	GGTCTC	1 cut(s)	817
BsrI	ACTGG	2 cut(s)	242, 290
BssECI	CCNNGG	2 cut(s)	585, 609
BssMI	GATC	8 cut(s)	322, 370, 385, 556, 614, 913, 1090, 1180
Bst2UI	CCWGG	2 cut(s)	610, 619
Bst6I	CTCTTC	2 cut(s)	552, 617
BstDEI	CTNAG	3 cut(s)	188, 604, 1095
BstDSI	CCRYGG	1 cut(s)	585
BstENI	CCTNNNNNAGG	1 cut(s)	607
BstF5I	GGATG	1 cut(s)	1235
BstFNI	CGCG	2 cut(s)	587, 927
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	8 cut(s)	325, 373, 388, 559, 617, 916, 1093, 1183
BstMAI	GTCTC	3 cut(s)	762, 817, 1172
BstMBI	GATC	8 cut(s)	322, 370, 385, 556, 614, 913, 1090, 1180
BstNI	CCWGG	2 cut(s)	610, 619
BstSCI	CCNGG	3 cut(s)	572, 608, 617
BstSFI	CTRYAG	1 cut(s)	379
BstUI	CGCG	2 cut(s)	587, 927
BstV2I	GAAGAC	1 cut(s)	849
BstX2I	RGATCY	2 cut(s)	614, 913
BstXI	CCANNNNNNTGG	1 cut(s)	761
BstYI	RGATCY	2 cut(s)	614, 913
BtgI	CCRYGG	1 cut(s)	585
BtsCI	GGATG	1 cut(s)	1235
BtsIMutI	CAGTG	1 cut(s)	235
CfoI	GCGC	1 cut(s)	194
Cfr42I	CCGCGG	1 cut(s)	588
Csp6I	GTAC	1 cut(s)	481
CviAII	CATG	6 cut(s)	93, 277, 433, 491, 1147, 1239
CviJI	RGCY	8 cut(s)	255, 495, 501, 608, 713, 833, 1007, 1115
CviKI_1	RGCY	8 cut(s)	255, 495, 501, 608, 713, 833, 1007, 1115
CviQI	GTAC	1 cut(s)	481
DdeI	CTNAG	3 cut(s)	188, 604, 1095
DpnI	GATC	8 cut(s)	324, 372, 387, 558, 616, 915, 1092, 1182
DpnII	GATC	8 cut(s)	322, 370, 385, 556, 614, 913, 1090, 1180
DraI	TTTAAA	1 cut(s)	1024
Eam1104I	CTCTTC	2 cut(s)	552, 617
EarI	CTCTTC	2 cut(s)	552, 617
EciI	GGCGGA	1 cut(s)	780
Eco31I	GGTCTC	1 cut(s)	817
Eco47III	AGCGCT	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	822
EcoNI	CCTNNNNNAGG	1 cut(s)	607
EcoRI	GAATTC	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	608, 617
FaeI	CATG	6 cut(s)	96, 280, 436, 494, 1150, 1242
FaqI	GGGAC	3 cut(s)	115, 556, 884
FatI	CATG	6 cut(s)	92, 276, 432, 490, 1146, 1238
FbaI	TGATCA	3 cut(s)	370, 556, 1180
FspBI	CTAG	4 cut(s)	222, 342, 917, 1008
GlaI	GCGC	1 cut(s)	193
GsuI	CTGGAG	1 cut(s)	273
HaeII	RGCGCY	1 cut(s)	195
HapII	CCGG	2 cut(s)	574, 827
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	6 cut(s)	96, 280, 436, 494, 1150, 1242
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HindIII	AAGCTT	2 cut(s)	831, 1113
HinfI	GANTC	7 cut(s)	152, 170, 544, 872, 968, 1151, 1165
HpaII	CCGG	2 cut(s)	574, 827
HphI	GGTGA	2 cut(s)	167, 278
Hpy166II	GTNNAC	3 cut(s)	483, 598, 975
Hpy188I	TCNGA	7 cut(s)	7, 322, 338, 422, 565, 670, 911
Hpy188III	TCNNGA	5 cut(s)	17, 301, 551, 861, 1074
Hpy8I	GTNNAC	3 cut(s)	483, 598, 975
HpyAV	CCTTC	4 cut(s)	23, 130, 191, 796
HpyCH4IV	ACGT	1 cut(s)	673
HpyCH4V	TGCA	6 cut(s)	87, 244, 509, 581, 658, 965
HpyF3I	CTNAG	3 cut(s)	188, 604, 1095
HpySE526I	ACGT	1 cut(s)	673
Hsp92II	CATG	6 cut(s)	96, 280, 436, 494, 1150, 1242
HspAI	GCGC	1 cut(s)	192
Ksp22I	TGATCA	3 cut(s)	370, 556, 1180
KspI	CCGCGG	1 cut(s)	588
Kzo9I	GATC	8 cut(s)	322, 370, 385, 556, 614, 913, 1090, 1180
LmnI	GCTCC	1 cut(s)	748
LweI	GCATC	3 cut(s)	241, 496, 839
MaeI	CTAG	4 cut(s)	222, 342, 917, 1008
MaeII	ACGT	1 cut(s)	673
MaeIII	GTNAC	3 cut(s)	99, 541, 932
MalI	GATC	8 cut(s)	324, 372, 387, 558, 616, 915, 1092, 1182
MboI	GATC	8 cut(s)	322, 370, 385, 556, 614, 913, 1090, 1180
MboII	GAAGA	6 cut(s)	32, 176, 539, 634, 815, 854
MflI	RGATCY	2 cut(s)	614, 913
MhlI	GDGCHC	1 cut(s)	753
MluCI	AATT	5 cut(s)	260, 694, 806, 898, 1122
MlyI	GAGTC	6 cut(s)	146, 164, 538, 866, 977, 1174
MmeI	TCCRAC	2 cut(s)	180, 316
MnlI	CCTC	8 cut(s)	89, 124, 188, 208, 358, 472, 739, 1120
MroXI	GAANNNNTTC	1 cut(s)	1081
MseI	TTAA	7 cut(s)	533, 687, 719, 888, 921, 1023, 1110
MslI	CAYNNNNRTG	3 cut(s)	516, 759, 1188
MspA1I	CMGCKG	1 cut(s)	587
MspI	CCGG	2 cut(s)	574, 827
MspR9I	CCNGG	3 cut(s)	574, 610, 619
MvaI	CCWGG	2 cut(s)	610, 619
MvnI	CGCG	2 cut(s)	587, 927
NciI	CCSGG	1 cut(s)	574
NdeII	GATC	8 cut(s)	322, 370, 385, 556, 614, 913, 1090, 1180
NlaIII	CATG	6 cut(s)	96, 280, 436, 494, 1150, 1242
NlaIV	GGNNCC	4 cut(s)	410, 616, 667, 784
NmuCI	GTSAC	3 cut(s)	99, 541, 932
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 165
PdmI	GAANNNNTTC	1 cut(s)	1081
PfeI	GAWTC	1 cut(s)	1151
PfoI	TCCNGGA	1 cut(s)	617
PleI	GAGTC	6 cut(s)	146, 164, 538, 866, 976, 1173
PpsI	GAGTC	6 cut(s)	146, 164, 538, 866, 976, 1173
PsiI	TTATAA	1 cut(s)	897
Psp6I	CCWGG	2 cut(s)	608, 617
PspGI	CCWGG	2 cut(s)	608, 617
PspN4I	GGNNCC	4 cut(s)	410, 616, 667, 784
PsuI	RGATCY	2 cut(s)	614, 913
RsaI	GTAC	1 cut(s)	482
RsaNI	GTAC	1 cut(s)	481
RseI	CAYNNNNRTG	3 cut(s)	516, 759, 1188
SacII	CCGCGG	1 cut(s)	588
SaqAI	TTAA	7 cut(s)	533, 687, 719, 888, 921, 1023, 1110
Sau3AI	GATC	8 cut(s)	322, 370, 385, 556, 614, 913, 1090, 1180
SchI	GAGTC	6 cut(s)	146, 164, 538, 866, 977, 1174
ScrFI	CCNGG	3 cut(s)	574, 610, 619
SduI	GDGCHC	1 cut(s)	753
SfaNI	GCATC	3 cut(s)	241, 496, 839
SfcI	CTRYAG	1 cut(s)	379
Sfr303I	CCGCGG	1 cut(s)	588
SgrBI	CCGCGG	1 cut(s)	588
SmiMI	CAYNNNNRTG	3 cut(s)	516, 759, 1188
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
SpeI	ACTAGT	2 cut(s)	221, 341
Sse9I	AATT	5 cut(s)	260, 694, 806, 898, 1122
SsiI	CCGC	6 cut(s)	139, 208, 585, 587, 765, 927
SspMI	CTAG	4 cut(s)	222, 342, 917, 1008
StyD4I	CCNGG	3 cut(s)	572, 608, 617
TaiI	ACGT	1 cut(s)	676
TaqI	TCGA	2 cut(s)	150, 1089
TaqII	GACCGA	1 cut(s)	1059
TasI	AATT	5 cut(s)	260, 694, 806, 898, 1122
TatI	WGTACW	1 cut(s)	480
TfiI	GAWTC	1 cut(s)	1151
Tru1I	TTAA	7 cut(s)	533, 687, 719, 888, 921, 1023, 1110
Tru9I	TTAA	7 cut(s)	533, 687, 719, 888, 921, 1023, 1110
TscAI	CASTG	1 cut(s)	242
TseFI	GTSAC	3 cut(s)	99, 541, 932
Tsp45I	GTSAC	3 cut(s)	99, 541, 932
TspDTI	ATGAA	5 cut(s)	112, 231, 766, 962, 1135
TspRI	CASTG	1 cut(s)	242
XagI	CCTNNNNNAGG	1 cut(s)	607
XapI	RAATTY	2 cut(s)	260, 806
XmnI	GAANNNNTTC	1 cut(s)	1081
XspI	CTAG	4 cut(s)	222, 342, 917, 1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.