Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023774.1

Orthogroup ID

OG0002518

Physical Location & Seq

Genomic Coordinates Reverse (-)

1572 .. 2192

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023774.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgggtgagaggaatgttgttttgtggaactcgatgatttcgtgcttagcgcagtgtgggagggacagtgaagctttggggttttttaatgagacatgggagcagggttttgaaccggatgaggctattgtggtgtcggttttgcctacgtgtgttcggttaggggatgttgatgatgggaaatggatacactcttatgcagattctaaagggcttctgcaagaagttgtgtctctggggaactcgcttgtgcgtatttactgtaaacgtggagatttggatgttgagggttttgaaccggatgaggctattgtggtgtcggttttgcctacgtgtgttcggttaggggatgttgatgatgggaaatggatacactcttatgcagattctaaagggcttctgcaagaagttgtgtctgtggggaactcgcttgtgcgtatttactgtaaacgtggagatttggatgttgcgtctagtgtttttgaacaaatggcccgtaaggatgttgtttcctggaactctttgatttcggggtatgcgtttaatgggagaggtgtacttgggatcaacttgttcgaggagatgtgcacgttatgcaccatggaacaatatttattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

206

Amino Acids

22.84

Weight (kDa)

4.46

Isoelectric Point (pI)

32.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09190
fragaria_vesca	FvH4_1g08040
malus_domestica	MD02G1085000.v1.1
prunus_persica	Prupe.7G204600_v2.0.a1
pyrus_communis	pycom02g06780 pycom02g20400
rosa_chinensis	RchiOBHm_Chr1g0349371 RchiOBHm_Chr1g0365421 RchiOBHm_Chr2g0094071 RchiOBHm_Chr2g0100501 RchiOBHm_Chr2g0145241 RchiOBHm_Chr5g0027681
rosa_laevigata	RLG00000016453 RLG00000016978 RLG00000028565
rosa_multiflora	Rmu_sc0000528.1_g000021 Rmu_sc0001942.1_g000078 Rmu_sc0001989.1_g000005 Rmu_sc0001989.1_g000006 Rmu_sc0002834.1_g000001 Rmu_sc0010460.1_g000009 Rmu_sc0015757.1_g000001 Rmu_sc0023774.1_g000001 Rmu_ssc0000469.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065660 Rroxscaffold_2G00147500
rosa_rugosa	Rorug01G0191200 Rorug01G0245800 Rorug01G0404500 Rorug02G0040700 Rorug02G0042900 Rorug02G0088700 Rorug02G0306900 Rorug02G0425200 RorugPtG0000800
rosa_samantha	Rh1BG121500 Rh2BG141500 Rh2BG455200 Rh2CG090800 Rh2CG143700 Rh2DG465200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	572
AfaI	GTAC	1 cut(s)	558
AflIII	ACRYGT	2 cut(s)	149, 332
AgsI	TTSAA	3 cut(s)	113, 296, 485
AjnI	CCWGG	1 cut(s)	512
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
Alw21I	GWGCWC	1 cut(s)	590
Alw26I	GTCTC	2 cut(s)	86, 237
Alw44I	GTGCAC	1 cut(s)	586
AlwI	GGATC	1 cut(s)	572
AoxI	GGCC	1 cut(s)	492
ApaLI	GTGCAC	1 cut(s)	586
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	493
AsuHPI	GGTGA	1 cut(s)	17
BaeGI	GKGCMC	1 cut(s)	590
Bbv12I	GWGCWC	1 cut(s)	590
BccI	CCATC	2 cut(s)	170, 353
BciT130I	CCWGG	1 cut(s)	514
BciVI	GTATCC	2 cut(s)	180, 363
BcoDI	GTCTC	2 cut(s)	86, 237
BfaI	CTAG	1 cut(s)	474
BfuI	GTATCC	2 cut(s)	180, 363
BlpI	GCTNAGC	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	514
BmgT120I	GGNCC	1 cut(s)	493
BmrFI	CCNGG	1 cut(s)	514
Bpu1102I	GCTNAGC	1 cut(s)	46
BsaAI	YACGTR	2 cut(s)	150, 333
BsaJI	CCNNGG	1 cut(s)	600
BsaWI	WCCGGW	2 cut(s)	115, 298
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
BseBI	CCWGG	1 cut(s)	514
BseDI	CCNNGG	1 cut(s)	600
BseGI	GGATG	7 cut(s)	124, 172, 286, 307, 355, 469, 508
BseRI	GAGGAG	1 cut(s)	593
BseSI	GKGCMC	1 cut(s)	590
BshFI	GGCC	1 cut(s)	494
BsiHKAI	GWGCWC	1 cut(s)	590
BsiSI	CCGG	2 cut(s)	116, 299
BslFI	GGGAC	1 cut(s)	77
BsmAI	GTCTC	2 cut(s)	86, 237
BsmFI	GGGAC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	590
Bsp143I	GATC	1 cut(s)	564
Bsp1720I	GCTNAGC	1 cut(s)	46
Bsp19I	CCATGG	1 cut(s)	600
BspANI	GGCC	1 cut(s)	494
BspPI	GGATC	1 cut(s)	572
BssECI	CCNNGG	1 cut(s)	600
BssMI	GATC	1 cut(s)	564
BssT1I	CCWWGG	1 cut(s)	600
Bst2UI	CCWGG	1 cut(s)	514
Bst4CI	ACNGT	3 cut(s)	68, 263, 446
BstAPI	GCANNNNNTGC	1 cut(s)	594
BstBAI	YACGTR	2 cut(s)	150, 333
BstDEI	CTNAG	1 cut(s)	46
BstDSI	CCRYGG	1 cut(s)	600
BstF5I	GGATG	7 cut(s)	124, 172, 286, 307, 355, 469, 508
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	1 cut(s)	567
BstMAI	GTCTC	2 cut(s)	86, 237
BstMBI	GATC	1 cut(s)	564
BstMWI	GCNNNNNNNGC	1 cut(s)	594
BstNI	CCWGG	1 cut(s)	514
BstSCI	CCNGG	1 cut(s)	512
BstSLI	GKGCMC	1 cut(s)	590
BsuI	GTATCC	2 cut(s)	180, 363
BsuRI	GGCC	1 cut(s)	494
BtgI	CCRYGG	1 cut(s)	600
BtsCI	GGATG	7 cut(s)	124, 172, 286, 307, 355, 469, 508
BtsI	GCAGTG	1 cut(s)	59
BtsIMutI	CAGTG	2 cut(s)	59, 73
CfoI	GCGC	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	493
CseI	GACGC	1 cut(s)	459
Csp6I	GTAC	1 cut(s)	557
CviAII	CATG	2 cut(s)	96, 601
CviJI	RGCY	6 cut(s)	74, 125, 214, 308, 397, 494
CviKI_1	RGCY	6 cut(s)	74, 125, 214, 308, 397, 494
CviQI	GTAC	1 cut(s)	557
DdeI	CTNAG	1 cut(s)	46
DpnI	GATC	1 cut(s)	566
DpnII	GATC	1 cut(s)	564
Eco130I	CCWWGG	1 cut(s)	600
EcoRII	CCWGG	1 cut(s)	512
EcoT14I	CCWWGG	1 cut(s)	600
ErhI	CCWWGG	1 cut(s)	600
FaeI	CATG	2 cut(s)	99, 604
FaiI	YATR	6 cut(s)	97, 198, 381, 537, 595, 602
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	2 cut(s)	95, 600
FokI	GGATG	7 cut(s)	131, 179, 293, 314, 362, 476, 515
FspBI	CTAG	1 cut(s)	474
GlaI	GCGC	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	494
HapII	CCGG	2 cut(s)	116, 299
HgaI	GACGC	1 cut(s)	459
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	2 cut(s)	99, 604
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HindIII	AAGCTT	1 cut(s)	72
HinfI	GANTC	2 cut(s)	203, 386
HpaII	CCGG	2 cut(s)	116, 299
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	4 cut(s)	266, 449, 557, 588
Hpy8I	GTNNAC	4 cut(s)	266, 449, 557, 588
HpyCH4III	ACNGT	3 cut(s)	68, 263, 446
HpyCH4IV	ACGT	5 cut(s)	149, 268, 332, 451, 590
HpyCH4V	TGCA	6 cut(s)	200, 220, 383, 403, 588, 597
HpyF10VI	GCNNNNNNNGC	1 cut(s)	594
HpyF3I	CTNAG	1 cut(s)	46
HpySE526I	ACGT	5 cut(s)	149, 268, 332, 451, 590
Hsp92II	CATG	2 cut(s)	99, 604
HspAI	GCGC	1 cut(s)	50
Kzo9I	GATC	1 cut(s)	564
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	6 cut(s)	89, 129, 221, 312, 499, 526
MaeI	CTAG	1 cut(s)	474
MaeII	ACGT	5 cut(s)	149, 268, 332, 451, 590
MalI	GATC	1 cut(s)	566
MboI	GATC	1 cut(s)	564
MhlI	GDGCHC	1 cut(s)	590
MnlI	CCTC	7 cut(s)	3, 54, 115, 280, 298, 545, 571
MseI	TTAA	2 cut(s)	87, 543
MslI	CAYNNNNRTG	2 cut(s)	195, 378
MspI	CCGG	2 cut(s)	116, 299
MspR9I	CCNGG	1 cut(s)	514
MvaI	CCWGG	1 cut(s)	514
MwoI	GCNNNNNNNGC	1 cut(s)	594
NcoI	CCATGG	1 cut(s)	600
NdeII	GATC	1 cut(s)	564
NlaIII	CATG	2 cut(s)	99, 604
PcsI	WCGNNNNNNNCGW	2 cut(s)	38, 536
PfeI	GAWTC	2 cut(s)	203, 386
PfoI	TCCNGGA	1 cut(s)	512
Ppu21I	YACGTR	2 cut(s)	150, 333
Psp6I	CCWGG	1 cut(s)	512
PspGI	CCWGG	1 cut(s)	512
PspPI	GGNCC	1 cut(s)	493
RsaI	GTAC	1 cut(s)	558
RsaNI	GTAC	1 cut(s)	557
RseI	CAYNNNNRTG	2 cut(s)	195, 378
SaqAI	TTAA	2 cut(s)	87, 543
Sau3AI	GATC	1 cut(s)	564
Sau96I	GGNCC	1 cut(s)	493
ScrFI	CCNGG	1 cut(s)	514
SduI	GDGCHC	1 cut(s)	590
SetI	ASST	7 cut(s)	76, 152, 271, 335, 454, 556, 593
SmiMI	CAYNNNNRTG	2 cut(s)	195, 378
SspI	AATATT	1 cut(s)	611
SspMI	CTAG	1 cut(s)	474
StyD4I	CCNGG	1 cut(s)	512
StyI	CCWWGG	1 cut(s)	600
TaaI	ACNGT	3 cut(s)	68, 263, 446
TaiI	ACGT	5 cut(s)	152, 271, 335, 454, 593
TaqI	TCGA	2 cut(s)	32, 576
TatI	WGTACW	1 cut(s)	556
TfiI	GAWTC	2 cut(s)	203, 386
Tru1I	TTAA	2 cut(s)	87, 543
Tru9I	TTAA	2 cut(s)	87, 543
TscAI	CASTG	2 cut(s)	59, 73
TspRI	CASTG	2 cut(s)	59, 73
VneI	GTGCAC	1 cut(s)	586
XspI	CTAG	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.