Prupe.7G204600_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
18939063 .. 18940533
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G204600.1

Sequence Viewer

Length: 1455 bp
ATGAGCAAAGCTTGCCGTGAGGCTGAGCGGAGGGTCCTCAGCCTCCTCCACGGCCGCAAAACCCGAACCCATCTCCGCCAAATCCACGGCCACCTCCTTCGCCATGGCCTTGGCCAATTCAACCAAGTCCTCGCCCACTTTGTCTCCGTTTGTTGGTCACTCGACAAAATGAGCTACGCAAATCGCGTGTTCGACCACACCCACAACCCCAATATCCTCCTCTTCAATTCCATGATCAAAGGCTTTTCAATCTGTGAACCCTTTGAACAGTCTCTCTACATGTTCTCTCTTATGAAAGACCGTGGCATTTGCCCCGATGAGTACACTTATGCGCCGTTGCTCAAGTCGTGCTCGAATATTTGTGACCACAGGTTAGGGCAGTGTGTTCATGGACAAATTTTGAGAGTTGGGTTTGAATGCTTTAGTTCGATTCGCATTGGGGTTATTGATTTGTACGTTACTTGTGGAAAAATGGAGGATGCTAGGAAGGTGTTTGATGCGTTGTCTCACAGAGATGTGATTGTTTGGAATTTGATGGTTCGTGGGTTCTGCAAGACCGGTGATGTGGATACGGGTTTGTATTTGTTTAGGCAGATGGGTGAAAGGAACGTTATTTCTTGGAACTCGATGATTTCGTGCTTAACGCAGTGTGGGCGGGATAGTGAAACTTTAGAACTTTTCCGTGAGATGTTGGATCAGAGATTCGAACCAGACGAGGCGACCGTGGTTGCAGTTTTGCCTGCTTGTGCTCATTTAGGGGATGTTGAGGTTGGGAAATGGATACATTCCTATACAGATTCTAAAGGACTTCTAAAACAAGTTGTATCTGTGGGGAACTCACTTATAAACTTTTACTGCAAATGTGGAGATTTGGATGCTGCTTGTAGTATTTTTGACCAAACGCCTCGTAAAAATGTTGTTTCCTGGAACACTCTGATTTCAGGGTATGCTTTTAATGGGAGAGGTGAACTTGGGATCGACTTGTTTGAGAAGATGATGAACAAAGGTGAGGGACCAAATGATGCAACTTTTGTGGGGGTTTTAACATGCTGTGCCCATGCAGGCTTGGTGGAAAAAGCAAAGGAATTGTTTGCTTCAATGGTTGTAAGTCACCAGCTTGAGCCAAAACTAGGGCATTATGGATGTATGGTTGATGTTCTTGGGCGAAGTGGACGGCTTAAGGAGGCTCATGACTTGATTAAGAGCATGCCTATGAAGCCAAATGCTGCCTTATGGGGTGCATTGCTTGGTGCTTGCTCTACTCACGGCGAGGTAGAGCTCGCGGAACTTGCAGCTAAAGAGCTTATTAATCTCGAACCACGGAATTCGGGGAATTATGTGCTGCTGTCAAATATTTATGCAGAAGAAGGCAGGTGGGATGAAGTTGAGAAAGTCAGAGATTTGATGAGGGAAAACTGCATCAAAAAAACACCAGGGCAGAGTGCAATTGGATAG

Protein Analysis

485

Amino Acids

54.22

Weight (kDa)

6.8

Isoelectric Point (pI)

35.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 845
AarI CACCTGC 1 cut(s) 1362
Acc36I ACCTGC 1 cut(s) 1362
AccBSI CCGCTC 1 cut(s) 28
AccII CGCG 2 cut(s) 186, 1283
AciI CCGC 5 cut(s) 28, 55, 76, 655, 1283
AclI AACGTT 1 cut(s) 609
AclWI GGATC 2 cut(s) 702, 983
AcoI YGGCCR 3 cut(s) 52, 88, 112
AcsI RAATTY 3 cut(s) 396, 529, 1324
AfaI GTAC 2 cut(s) 323, 455
AfiI CCNNNNNNNGG 2 cut(s) 153, 1130
AflII CTTAAG 1 cut(s) 1178
AflIII ACRYGT 1 cut(s) 279
AgeI ACCGGT 1 cut(s) 557
AgsI TTSAA 6 cut(s) 121, 226, 249, 266, 416, 1098
AjnI CCWGG 2 cut(s) 923, 1432
AluBI AGCT 6 cut(s) 11, 174, 1117, 1279, 1295, 1303
AluI AGCT 6 cut(s) 11, 174, 1117, 1279, 1295, 1303
Alw21I GWGCWC 3 cut(s) 353, 751, 1281
Alw26I GTCTC 3 cut(s) 148, 276, 510
AlwI GGATC 2 cut(s) 702, 983
AoxI GGCC 4 cut(s) 52, 88, 106, 112
ApeKI GCWGC 4 cut(s) 878, 1226, 1292, 1342
ApoI RAATTY 3 cut(s) 396, 529, 1324
AseI ATTAAT 1 cut(s) 1308
AsiGI ACCGGT 1 cut(s) 557
AspLEI GCGC 1 cut(s) 334
AspS9I GGNCC 2 cut(s) 34, 1013
AsuHPI GGTGA 5 cut(s) 572, 611, 977, 1019, 1103
AsuII TTCGAA 1 cut(s) 705
AvaII GGWCC 2 cut(s) 34, 1013
BaeGI GKGCMC 1 cut(s) 1057
BalI TGGCCA 1 cut(s) 114
BanII GRGCYC 1 cut(s) 1281
Bbv12I GWGCWC 3 cut(s) 353, 751, 1281
BbvCI CCTCAGC 1 cut(s) 38
BbvI GCAGC 4 cut(s) 865, 1213, 1304, 1329
BccI CCATC 3 cut(s) 78, 529, 589
BceAI ACGGC 5 cut(s) 67, 103, 319, 1190, 1282
BciT130I CCWGG 2 cut(s) 925, 1434
BciVI GTATCC 2 cut(s) 562, 774
BclI TGATCA 1 cut(s) 234
BcoDI GTCTC 3 cut(s) 148, 276, 510
BfaI CTAG 2 cut(s) 483, 1130
BfrI CTTAAG 1 cut(s) 1178
BfuAI ACCTGC 1 cut(s) 1362
BfuI GTATCC 2 cut(s) 562, 774
BisI GCNGC 5 cut(s) 55, 879, 1227, 1293, 1343
BlpI GCTNAGC 1 cut(s) 24
BlsI GCNGC 5 cut(s) 56, 880, 1228, 1294, 1344
Bme1390I CCNGG 2 cut(s) 925, 1434
Bme18I GGWCC 2 cut(s) 34, 1013
BmgT120I GGNCC 2 cut(s) 34, 1013
BmiI GGNNCC 2 cut(s) 35, 1014
BmrFI CCNGG 2 cut(s) 925, 1434
BmsI GCATC 5 cut(s) 469, 487, 865, 1012, 1428
Bpu10I CCTNAGC 1 cut(s) 38
Bpu1102I GCTNAGC 1 cut(s) 24
Bpu14I TTCGAA 1 cut(s) 705
BpuEI CTTGAG 2 cut(s) 326, 1139
BsaJI CCNNGG 8 cut(s) 49, 85, 103, 109, 301, 723, 1319, 1433
BsaWI WCCGGW 1 cut(s) 557
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 1130
Bse118I RCCGGY 1 cut(s) 557
Bse3DI GCAATG 1 cut(s) 1241
BseBI CCWGG 2 cut(s) 925, 1434
BseDI CCNNGG 8 cut(s) 49, 85, 103, 109, 301, 723, 1319, 1433
BseGI GGATG 5 cut(s) 484, 766, 880, 1148, 1384
BseLI CCNNNNNNNGG 2 cut(s) 153, 1130
BseMI GCAATG 1 cut(s) 1241
BseMII CTCAG 2 cut(s) 15, 52
BseRI GAGGAG 2 cut(s) 35, 209
BseSI GKGCMC 1 cut(s) 1057
BseX3I CGGCCG 1 cut(s) 52
BseXI GCAGC 4 cut(s) 865, 1213, 1304, 1329
Bsh1236I CGCG 2 cut(s) 186, 1283
Bsh1285I CGRYCG 2 cut(s) 55, 723
BshFI GGCC 4 cut(s) 54, 90, 108, 114
BshTI ACCGGT 1 cut(s) 557
BsiEI CGRYCG 2 cut(s) 55, 723
BsiHKAI GWGCWC 3 cut(s) 353, 751, 1281
BsiSI CCGG 1 cut(s) 558
BslFI GGGAC 1 cut(s) 1026
BslI CCNNNNNNNGG 2 cut(s) 153, 1130
BsmAI GTCTC 3 cut(s) 148, 276, 510
BsmFI GGGAC 1 cut(s) 1026
BsmI GAATGC 1 cut(s) 422
BsnI GGCC 4 cut(s) 54, 90, 108, 114
Bsp119I TTCGAA 1 cut(s) 705
Bsp1286I GDGCHC 4 cut(s) 353, 751, 1057, 1281
Bsp143I GATC 3 cut(s) 234, 694, 975
Bsp1720I GCTNAGC 1 cut(s) 24
Bsp19I CCATGG 1 cut(s) 103
BspACI CCGC 5 cut(s) 28, 55, 76, 655, 1283
BspANI GGCC 4 cut(s) 54, 90, 108, 114
BspCNI CTCAG 2 cut(s) 16, 51
BspFNI CGCG 2 cut(s) 186, 1283
BspHI TCATGA 1 cut(s) 1189
BspLI GGNNCC 2 cut(s) 35, 1014
BspMI ACCTGC 1 cut(s) 1362
BspPI GGATC 2 cut(s) 702, 983
BspT104I TTCGAA 1 cut(s) 705
BspTI CTTAAG 1 cut(s) 1178
BsrBI CCGCTC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 1241
BsrFI RCCGGY 1 cut(s) 557
BssAI RCCGGY 1 cut(s) 557
BssECI CCNNGG 8 cut(s) 49, 85, 103, 109, 301, 723, 1319, 1433
BssMI GATC 3 cut(s) 234, 694, 975
BssT1I CCWWGG 2 cut(s) 103, 109
Bst2UI CCWGG 2 cut(s) 925, 1434
Bst4CI ACNGT 3 cut(s) 270, 302, 724
Bst6I CTCTTC 1 cut(s) 227
BstAFI CTTAAG 1 cut(s) 1178
BstAPI GCANNNNNTGC 1 cut(s) 12
BstBI TTCGAA 1 cut(s) 705
BstC8I GCNNGC 6 cut(s) 13, 741, 1063, 1208, 1255, 1281
BstDEI CTNAG 2 cut(s) 24, 38
BstDSI CCRYGG 6 cut(s) 49, 85, 103, 301, 723, 1319
BstF5I GGATG 5 cut(s) 484, 766, 880, 1148, 1384
BstFNI CGCG 2 cut(s) 186, 1283
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 3 cut(s) 237, 697, 978
BstMAI GTCTC 3 cut(s) 148, 276, 510
BstMBI GATC 3 cut(s) 234, 694, 975
BstMCI CGRYCG 2 cut(s) 55, 723
BstMWI GCNNNNNNNGC 4 cut(s) 12, 652, 1216, 1289
BstNI CCWGG 2 cut(s) 925, 1434
BstNSI RCATGY 3 cut(s) 283, 1050, 1210
BstSCI CCNGG 2 cut(s) 923, 1432
BstSLI GKGCMC 1 cut(s) 1057
BstUI CGCG 2 cut(s) 186, 1283
BstV1I GCAGC 4 cut(s) 865, 1213, 1304, 1329
BstXI CCANNNNNNTGG 1 cut(s) 110
BstZI CGGCCG 1 cut(s) 52
BsuI GTATCC 2 cut(s) 562, 774
BsuRI GGCC 4 cut(s) 54, 90, 108, 114
BtgI CCRYGG 6 cut(s) 49, 85, 103, 301, 723, 1319
BtsCI GGATG 5 cut(s) 484, 766, 880, 1148, 1384
BtsI GCAGTG 2 cut(s) 386, 653
BtsIMutI CAGTG 2 cut(s) 386, 653
BveI ACCTGC 1 cut(s) 1362
Cac8I GCNNGC 6 cut(s) 13, 741, 1063, 1208, 1255, 1281
CciI TCATGA 1 cut(s) 1189
CfoI GCGC 1 cut(s) 334
Cfr10I RCCGGY 1 cut(s) 557
Cfr13I GGNCC 2 cut(s) 34, 1013
Csp6I GTAC 2 cut(s) 322, 454
CspAI ACCGGT 1 cut(s) 557
CspCI CAANNNNNGTGG 2 cut(s) 1014, 1049
CviAII CATG 8 cut(s) 104, 232, 280, 389, 1047, 1058, 1190, 1207
CviQI GTAC 2 cut(s) 322, 454
DdeI CTNAG 2 cut(s) 24, 38
DpnI GATC 3 cut(s) 236, 696, 977
DpnII GATC 3 cut(s) 234, 694, 975
EaeI YGGCCR 3 cut(s) 52, 88, 112
EagI CGGCCG 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
EciI GGCGGA 1 cut(s) 65
Ecl136II GAGCTC 1 cut(s) 1279
EclXI CGGCCG 1 cut(s) 52
Eco130I CCWWGG 2 cut(s) 103, 109
Eco24I GRGCYC 1 cut(s) 1281
Eco47I GGWCC 2 cut(s) 34, 1013
Eco52I CGGCCG 1 cut(s) 52
Eco53kI GAGCTC 1 cut(s) 1279
EcoICRI GAGCTC 1 cut(s) 1279
EcoO109I RGGNCCY 1 cut(s) 34
EcoRI GAATTC 1 cut(s) 1324
EcoRII CCWGG 2 cut(s) 923, 1432
EcoT14I CCWWGG 2 cut(s) 103, 109
EcoT38I GRGCYC 1 cut(s) 1281
ErhI CCWWGG 2 cut(s) 103, 109
FaeI CATG 8 cut(s) 107, 235, 283, 392, 1050, 1061, 1193, 1210
FaqI GGGAC 1 cut(s) 1026
FatI CATG 8 cut(s) 103, 231, 279, 388, 1046, 1057, 1189, 1206
FauI CCCGC 1 cut(s) 648
FbaI TGATCA 1 cut(s) 234
Fnu4HI GCNGC 5 cut(s) 55, 879, 1227, 1293, 1343
FokI GGATG 5 cut(s) 491, 773, 887, 1155, 1391
FriOI GRGCYC 1 cut(s) 1281
Fsp4HI GCNGC 5 cut(s) 55, 879, 1227, 1293, 1343
FspBI CTAG 2 cut(s) 483, 1130
GlaI GCGC 1 cut(s) 333
GluI GCNGC 5 cut(s) 55, 879, 1227, 1293, 1343
HaeIII GGCC 4 cut(s) 54, 90, 108, 114
HapII CCGG 1 cut(s) 558
HhaI GCGC 1 cut(s) 334
Hin1II CATG 8 cut(s) 107, 235, 283, 392, 1050, 1061, 1193, 1210
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HindIII AAGCTT 1 cut(s) 9
HinfI GANTC 3 cut(s) 430, 702, 797
HpaII CCGG 1 cut(s) 558
HphI GGTGA 5 cut(s) 572, 611, 977, 1019, 1103
Hpy166II GTNNAC 4 cut(s) 257, 324, 968, 1172
Hpy188I TCNGA 3 cut(s) 699, 936, 1397
Hpy188III TCNNGA 2 cut(s) 1190, 1313
Hpy8I GTNNAC 4 cut(s) 257, 324, 968, 1172
HpyAV CCTTC 3 cut(s) 107, 481, 1361
HpyCH4III ACNGT 3 cut(s) 270, 302, 724
HpyCH4IV ACGT 2 cut(s) 456, 609
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 652, 1216, 1289
HpyF3I CTNAG 2 cut(s) 24, 38
HpySE526I ACGT 2 cut(s) 456, 609
Hsp92II CATG 8 cut(s) 107, 235, 283, 392, 1050, 1061, 1193, 1210
HspAI GCGC 1 cut(s) 332
Ksp22I TGATCA 1 cut(s) 234
Kzo9I GATC 3 cut(s) 234, 694, 975
Lsp1109I GCAGC 4 cut(s) 865, 1213, 1304, 1329
LweI GCATC 5 cut(s) 469, 487, 865, 1012, 1428
MaeI CTAG 2 cut(s) 483, 1130
MaeII ACGT 2 cut(s) 456, 609
MaeIII GTNAC 4 cut(s) 156, 362, 457, 1109
MalI GATC 3 cut(s) 236, 696, 977
MbiI CCGCTC 1 cut(s) 28
MboI GATC 3 cut(s) 234, 694, 975
MboII GAAGA 3 cut(s) 214, 1003, 1376
MfeI CAATTG 1 cut(s) 1446
MhlI GDGCHC 4 cut(s) 353, 751, 1057, 1281
MlsI TGGCCA 1 cut(s) 114
MluCI AATT 8 cut(s) 116, 226, 396, 529, 1085, 1324, 1333, 1446
MluNI TGGCCA 1 cut(s) 114
MmeI TCCRAC 1 cut(s) 672
Mox20I TGGCCA 1 cut(s) 114
MscI TGGCCA 1 cut(s) 114
MseI TTAA 6 cut(s) 641, 954, 1043, 1179, 1200, 1308
MslI CAYNNNNRTG 2 cut(s) 513, 1211
Msp20I TGGCCA 1 cut(s) 114
MspCI CTTAAG 1 cut(s) 1178
MspI CCGG 1 cut(s) 558
MspR9I CCNGG 2 cut(s) 925, 1434
MunI CAATTG 1 cut(s) 1446
Mva1269I GAATGC 1 cut(s) 422
MvaI CCWGG 2 cut(s) 925, 1434
MvnI CGCG 2 cut(s) 186, 1283
MwoI GCNNNNNNNGC 4 cut(s) 12, 652, 1216, 1289
NcoI CCATGG 1 cut(s) 103
NdeII GATC 3 cut(s) 234, 694, 975
NlaIII CATG 8 cut(s) 107, 235, 283, 392, 1050, 1061, 1193, 1210
NlaIV GGNNCC 2 cut(s) 35, 1014
NmuCI GTSAC 3 cut(s) 156, 362, 1109
NspI RCATGY 3 cut(s) 283, 1050, 1210
NspV TTCGAA 1 cut(s) 705
PaeI GCATGC 1 cut(s) 1210
PagI TCATGA 1 cut(s) 1189
PaqCI CACCTGC 1 cut(s) 1362
PciI ACATGT 1 cut(s) 279
PcsI WCGNNNNNNNCGW 4 cut(s) 183, 632, 711, 720
PctI GAATGC 1 cut(s) 422
PfeI GAWTC 3 cut(s) 430, 702, 797
PfoI TCCNGGA 1 cut(s) 923
PinAI ACCGGT 1 cut(s) 557
PkrI GCNGC 5 cut(s) 56, 880, 1228, 1294, 1344
PpuMI RGGWCCY 1 cut(s) 34
PscI ACATGT 1 cut(s) 279
PshBI ATTAAT 1 cut(s) 1308
PsiI TTATAA 1 cut(s) 845
Psp124BI GAGCTC 1 cut(s) 1281
Psp1406I AACGTT 1 cut(s) 609
Psp5II RGGWCCY 1 cut(s) 34
Psp6I CCWGG 2 cut(s) 923, 1432
PspGI CCWGG 2 cut(s) 923, 1432
PspN4I GGNNCC 2 cut(s) 35, 1014
PspPI GGNCC 2 cut(s) 34, 1013
PspPPI RGGWCCY 1 cut(s) 34
RsaI GTAC 2 cut(s) 323, 455
RsaNI GTAC 2 cut(s) 322, 454
RseI CAYNNNNRTG 2 cut(s) 513, 1211
SacI GAGCTC 1 cut(s) 1281
SaqAI TTAA 6 cut(s) 641, 954, 1043, 1179, 1200, 1308
SatI GCNGC 5 cut(s) 55, 879, 1227, 1293, 1343
Sau3AI GATC 3 cut(s) 234, 694, 975
Sau96I GGNCC 2 cut(s) 34, 1013
ScrFI CCNGG 2 cut(s) 925, 1434
SduI GDGCHC 4 cut(s) 353, 751, 1057, 1281
SfaNI GCATC 5 cut(s) 469, 487, 865, 1012, 1428
SfuI TTCGAA 1 cut(s) 705
SinI GGWCC 2 cut(s) 34, 1013
SmiMI CAYNNNNRTG 2 cut(s) 513, 1211
SmlI CTYRAG 3 cut(s) 341, 1118, 1178
SmoI CTYRAG 3 cut(s) 341, 1118, 1178
SphI GCATGC 1 cut(s) 1210
Sse9I AATT 8 cut(s) 116, 226, 396, 529, 1085, 1324, 1333, 1446
SsiI CCGC 5 cut(s) 28, 55, 76, 655, 1283
SspI AATATT 2 cut(s) 358, 1354
SspMI CTAG 2 cut(s) 483, 1130
SstI GAGCTC 1 cut(s) 1281
StyD4I CCNGG 2 cut(s) 923, 1432
StyI CCWWGG 2 cut(s) 103, 109
TaaI ACNGT 3 cut(s) 270, 302, 724
TaiI ACGT 2 cut(s) 459, 612
TaqI TCGA 8 cut(s) 162, 192, 353, 428, 626, 705, 978, 1314
TasI AATT 8 cut(s) 116, 226, 396, 529, 1085, 1324, 1333, 1446
TatI WGTACW 1 cut(s) 321
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 3 cut(s) 430, 702, 797
Tru1I TTAA 6 cut(s) 641, 954, 1043, 1179, 1200, 1308
Tru9I TTAA 6 cut(s) 641, 954, 1043, 1179, 1200, 1308
TscAI CASTG 2 cut(s) 386, 653
TseFI GTSAC 3 cut(s) 156, 362, 1109
TseI GCWGC 4 cut(s) 878, 1226, 1292, 1342
Tsp45I GTSAC 3 cut(s) 156, 362, 1109
TspDTI ATGAA 5 cut(s) 308, 377, 1013, 1229, 1395
TspGWI ACGGA 3 cut(s) 136, 671, 1336
TspRI CASTG 2 cut(s) 386, 653
Vha464I CTTAAG 1 cut(s) 1178
VpaK11BI GGWCC 2 cut(s) 34, 1013
VspI ATTAAT 1 cut(s) 1308
XapI RAATTY 3 cut(s) 396, 529, 1324
XceI RCATGY 3 cut(s) 283, 1050, 1210
XspI CTAG 2 cut(s) 483, 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.