Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002518

Physical Location & Seq

Genomic Coordinates Reverse (-)

3358328 .. 3360954

Gene Structure 2627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0042900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGGGCGCAGCATCACCTTCTGAACTAAGCCTTGAGTGCAAGCCTCACAGCTATTCCATGCTCCTTAAATCATTTGGCGACCATCATCACCAGGCCGCCACGACGACGCCATCTCATGACCTGAAGCAGCTCGAAGAGATACTCTCTCGTCTAGAAGAAGAGCGTCTCAAGATCGATGCCTTCAAGCGCGAGCTTCCTCTCTCCATGCAGCTCCTCACTACGGCTGTGGAGGCATCAAGGCAGCAGCTACAAGCTTACAGATCATCGTCGGCAAATAATCAAGGACCAATTAGGCCGGTTCTTGAAGAATTCATACCTCTTAAACATTCAAATTCTGAAGGCTCAGAGAAACCAACAAACAGTTCTGATAAGGCAAACTGGATGACCTCTGTCCAACTATGGAGCCAAGCTGATGCAACCAAACCAAAAGAACAAGGTGATATGGGGTTCAATGTCAGCCCCAAGCTAGCCCTAGACACCAAGCAGCAAAGATCTTACGGAGGAGGAGCCTTCCATCCATTTTCGAAAGATATTCGCAACTCGGGTCCATCCCCGAACCTGCAAACTCTTCCGGAGTTGGCTCTCGGCTCTCCGGAGAACAAAGCCGGCGAGAATATGGATCAGGACAACAAATGCTCCGAGTTGGGTGAGAATGGTATCAACTGCGGTGTGGTTAGTACCACTCAAGATCAACAAGGCAAGGCAATAGAAGGCCAAACAAGCACTATCACCACCACCAACACCAACACAAGTACTCAAAACAGTAGTCACAGGAAGGCCAGGCGGTGCTGGTCGCCGGACTTGCACAGGAGATTCGTTAGCGCCCTCCAAATGCTTGGTGGTTCTCAAGTGGCCACACCAAAACAAATAAGGGAGCTCATGAAAGTTGACGGTTTGACCAATGATGAAGTTAAAAGTCATCTGCAGAAGTACAGGCTCCACACTAGACGGCCCAGCCCAAGCCCACAGACAACGGGAGGCCCAACGCCGCAGCTGGTGGTCCTAGGTGGCATCTGGGTTCCACCGGAGTACGCCACGGCAGGTCACAATGGGCCCACGGCCCTATACAGCCCAGCCTCCCACGCTCCGACACACTACTGTGCAACCCCAATGCCACAAGACTTCTACACTACGGCACAGCAGCAGCCGCAGTCAGGTCACCACCAGCTGCACCACCACACGCTCCACCACCAGCTCCACGTGTACAGAGCCAGCACTACTTCCCGGACGCAAAGCTCGCCGGAATCTGACCTGAGAGGAAATGGTGACCGGTCTGAGAGCATCGAAGATGGAAAGTCTGAGAGTGGGAGCTGGAAGGCTGGGACTGAGAGTGGTGAGAAAGGCATGGCTGCCCGGAGATCGGAAGACCGTGAGGAAAGCAATGGAAGTCAGATCACACTCAAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010305 GO:0014070 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043401 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_16 TPR_19 TPR_2 TPR_6 TPR_8 Thioredoxin

Protein Analysis

469

Amino Acids

51.5

Weight (kDa)

6.9

Isoelectric Point (pI)

60.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HHO5_N	PF26575	13 - 84	2.4e-23	HHO5-like, N-terminal domain
Myb_DNA-binding	PF00249	261 - 312	1.7e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09190
fragaria_vesca	FvH4_1g08040
malus_domestica	MD02G1085000.v1.1
prunus_persica	Prupe.7G204600_v2.0.a1
pyrus_communis	pycom02g06780 pycom02g20400
rosa_chinensis	RchiOBHm_Chr1g0349371 RchiOBHm_Chr1g0365421 RchiOBHm_Chr2g0094071 RchiOBHm_Chr2g0100501 RchiOBHm_Chr2g0145241 RchiOBHm_Chr5g0027681
rosa_laevigata	RLG00000016453 RLG00000016978 RLG00000028565
rosa_multiflora	Rmu_sc0000528.1_g000021 Rmu_sc0001942.1_g000078 Rmu_sc0001989.1_g000005 Rmu_sc0001989.1_g000006 Rmu_sc0002834.1_g000001 Rmu_sc0010460.1_g000009 Rmu_sc0015757.1_g000001 Rmu_sc0023774.1_g000001 Rmu_ssc0000469.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065660 Rroxscaffold_2G00147500
rosa_rugosa	Rorug01G0191200 Rorug01G0245800 Rorug01G0404500 Rorug02G0040700 Rorug02G0042900 Rorug02G0088700 Rorug02G0306900 Rorug02G0425200 RorugPtG0000800
rosa_samantha	Rh1BG121500 Rh2BG141500 Rh2BG455200 Rh2CG090800 Rh2CG143700 Rh2DG465200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	567, 1031
AccII	CGCG	1 cut(s)	189
AccIII	TCCGGA	2 cut(s)	571, 592
AciI	CCGC	5 cut(s)	96, 666, 784, 989, 1148
AclWI	GGATC	1 cut(s)	627
AcoI	YGGCCR	1 cut(s)	852
AcsI	RAATTY	2 cut(s)	308, 331
AcuI	CTGAAG	2 cut(s)	143, 357
AcvI	CACGTG	1 cut(s)	1201
AcyI	GRCGYC	1 cut(s)	107
AfaI	GTAC	5 cut(s)	679, 754, 932, 1031, 1205
AfiI	CCNNNNNNNGG	3 cut(s)	220, 1154, 1360
AflIII	ACRYGT	1 cut(s)	1200
AgeI	ACCGGT	1 cut(s)	1269
AgsI	TTSAA	4 cut(s)	184, 305, 330, 451
AjnI	CCWGG	2 cut(s)	90, 779
AjuI	GAANNNNNNNTTGG	2 cut(s)	346, 378
AleI	CACNNNNGTG	1 cut(s)	1098
Alw21I	GWGCWC	1 cut(s)	879
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	1 cut(s)	627
Ama87I	CYCGRG	1 cut(s)	541
Aor13HI	TCCGGA	2 cut(s)	571, 592
AoxI	GGCC	9 cut(s)	93, 293, 712, 777, 852, 950, 979, 1052, 1059
ApaI	GGGCCC	1 cut(s)	1056
ApoI	RAATTY	2 cut(s)	308, 331
ArsI	GACNNNNNNTTYG	2 cut(s)	751, 783
AsiGI	ACCGGT	1 cut(s)	1269
AspA2I	CCTAGG	1 cut(s)	1003
AspLEI	GCGC	3 cut(s)	8, 189, 824
AspS9I	GGNCC	8 cut(s)	284, 545, 951, 980, 1000, 1052, 1053, 1060
AsuC2I	CCSGG	2 cut(s)	1225, 1354
AsuHPI	GGTGA	8 cut(s)	6, 80, 449, 659, 721, 1151, 1277, 1346
AsuII	TTCGAA	1 cut(s)	524
AsuNHI	GCTAGC	1 cut(s)	466
AvaI	CYCGRG	1 cut(s)	541
AvaII	GGWCC	3 cut(s)	284, 545, 1000
AvrII	CCTAGG	1 cut(s)	1003
BaeGI	GKGCMC	1 cut(s)	1056
BalI	TGGCCA	1 cut(s)	854
BanII	GRGCYC	2 cut(s)	879, 1056
BarI	GAAGNNNNNNTAC	2 cut(s)	297, 329
BbrPI	CACGTG	1 cut(s)	1201
BbsI	GAAGAC	1 cut(s)	1371
Bbv12I	GWGCWC	1 cut(s)	879
BccI	CCATC	5 cut(s)	90, 118, 522, 556, 1283
BceAI	ACGGC	5 cut(s)	237, 965, 1053, 1074, 1149
BciT130I	CCWGG	2 cut(s)	92, 781
BcnI	CCSGG	2 cut(s)	1225, 1354
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	5 cut(s)	152, 467, 473, 945, 1004
BfmI	CTRYAG	1 cut(s)	923
BfoI	RGCGCY	1 cut(s)	825
BfuAI	ACCTGC	2 cut(s)	567, 1031
BglII	AGATCT	1 cut(s)	491
BlnI	CCTAGG	1 cut(s)	1003
BmcAI	AGTACT	1 cut(s)	754
Bme1390I	CCNGG	4 cut(s)	92, 781, 1225, 1354
Bme18I	GGWCC	3 cut(s)	284, 545, 1000
BmeT110I	CYCGRG	1 cut(s)	541
BmgT120I	GGNCC	8 cut(s)	284, 545, 951, 980, 1000, 1052, 1053, 1060
BmiI	GGNNCC	6 cut(s)	404, 508, 546, 938, 1020, 1054
BmrFI	CCNGG	4 cut(s)	92, 781, 1225, 1354
BmsI	GCATC	6 cut(s)	20, 166, 242, 403, 1020, 1290
BmtI	GCTAGC	1 cut(s)	470
BoxI	GACNNNNGTC	1 cut(s)	389
BpiI	GAAGAC	1 cut(s)	1371
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
Bpu14I	TTCGAA	1 cut(s)	524
BpuEI	CTTGAG	5 cut(s)	53, 152, 669, 831, 1385
BpuMI	CCSGG	2 cut(s)	1225, 1354
Bsa29I	ATCGAT	1 cut(s)	174
BsaAI	YACGTR	1 cut(s)	1201
BsaHI	GRCGYC	1 cut(s)	107
BsaJI	CCNNGG	3 cut(s)	1003, 1035, 1056
BsaWI	WCCGGW	4 cut(s)	571, 592, 1024, 1269
BsaXI	ACNNNNNCTCC	2 cut(s)	620, 650
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 1154, 1360
Bse118I	RCCGGY	3 cut(s)	295, 605, 1269
Bse1I	ACTGG	1 cut(s)	383
Bse3DI	GCAATG	1 cut(s)	1387
BseAI	TCCGGA	2 cut(s)	571, 592
BseBI	CCWGG	2 cut(s)	92, 781
BseCI	ATCGAT	1 cut(s)	174
BseDI	CCNNGG	3 cut(s)	1003, 1035, 1056
BseGI	GGATG	3 cut(s)	387, 514, 548
BseLI	CCNNNNNNNGG	3 cut(s)	220, 1154, 1360
BseMI	GCAATG	1 cut(s)	1387
BseMII	CTCAG	5 cut(s)	357, 1244, 1266, 1290, 1317
BseNI	ACTGG	1 cut(s)	383
BseRI	GAGGAG	3 cut(s)	203, 516, 519
BseSI	GKGCMC	1 cut(s)	1056
BseYI	CCCAGC	3 cut(s)	953, 1072, 1319
BsgI	GTGCAG	1 cut(s)	1154
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	9 cut(s)	95, 295, 714, 779, 854, 952, 981, 1054, 1061
BshTI	ACCGGT	1 cut(s)	1269
BshVI	ATCGAT	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	879
BsiHKCI	CYCGRG	1 cut(s)	541
BslFI	GGGAC	1 cut(s)	1336
BslI	CCNNNNNNNGG	3 cut(s)	220, 1154, 1360
BsmAI	GTCTC	1 cut(s)	170
BsmBI	CGTCTC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	1336
BsnI	GGCC	9 cut(s)	95, 295, 714, 779, 854, 952, 981, 1054, 1061
BsoBI	CYCGRG	1 cut(s)	541
Bsp119I	TTCGAA	1 cut(s)	524
Bsp120I	GGGCCC	1 cut(s)	1052
Bsp1286I	GDGCHC	2 cut(s)	879, 1056
Bsp13I	TCCGGA	2 cut(s)	571, 592
Bsp1407I	TGTACA	1 cut(s)	1203
Bsp143I	GATC	7 cut(s)	171, 260, 491, 619, 688, 1358, 1392
BspACI	CCGC	5 cut(s)	96, 666, 784, 989, 1148
BspANI	GGCC	9 cut(s)	95, 295, 714, 779, 854, 952, 981, 1054, 1061
BspCNI	CTCAG	5 cut(s)	356, 1245, 1267, 1291, 1318
BspDI	ATCGAT	1 cut(s)	174
BspEI	TCCGGA	2 cut(s)	571, 592
BspFNI	CGCG	1 cut(s)	189
BspHI	TCATGA	2 cut(s)	115, 879
BspLI	GGNNCC	6 cut(s)	404, 508, 546, 938, 1020, 1054
BspMAI	CTGCAG	1 cut(s)	927
BspMI	ACCTGC	2 cut(s)	567, 1031
BspOI	GCTAGC	1 cut(s)	470
BspPI	GGATC	1 cut(s)	627
BspQI	GCTCTTC	1 cut(s)	153
BspT104I	TTCGAA	1 cut(s)	524
BsrDI	GCAATG	1 cut(s)	1387
BsrFI	RCCGGY	3 cut(s)	295, 605, 1269
BsrGI	TGTACA	1 cut(s)	1203
BsrI	ACTGG	1 cut(s)	383
BssAI	RCCGGY	3 cut(s)	295, 605, 1269
BssECI	CCNNGG	3 cut(s)	1003, 1035, 1056
BssMI	GATC	7 cut(s)	171, 260, 491, 619, 688, 1358, 1392
BssNI	GRCGYC	1 cut(s)	107
BssT1I	CCWWGG	1 cut(s)	1003
Bst2UI	CCWGG	2 cut(s)	92, 781
Bst4CI	ACNGT	5 cut(s)	362, 764, 893, 1100, 1370
Bst6I	CTCTTC	3 cut(s)	129, 153, 573
BstACI	GRCGYC	1 cut(s)	107
BstAUI	TGTACA	1 cut(s)	1203
BstBAI	YACGTR	1 cut(s)	1201
BstBI	TTCGAA	1 cut(s)	524
BstC8I	GCNNGC	6 cut(s)	41, 191, 468, 607, 1213, 1238
BstDEI	CTNAG	6 cut(s)	26, 343, 1253, 1275, 1299, 1326
BstDSI	CCRYGG	2 cut(s)	1035, 1056
BstEII	GGTNACC	2 cut(s)	1157, 1265
BstF5I	GGATG	3 cut(s)	387, 514, 548
BstFNI	CGCG	1 cut(s)	189
BstH2I	RGCGCY	1 cut(s)	825
BstHHI	GCGC	3 cut(s)	8, 189, 824
BstKTI	GATC	7 cut(s)	174, 263, 494, 622, 691, 1361, 1395
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	7 cut(s)	171, 260, 491, 619, 688, 1358, 1392
BstMWI	GCNNNNNNNGC	7 cut(s)	36, 230, 720, 802, 1082, 1147, 1237
BstNI	CCWGG	2 cut(s)	92, 781
BstPAI	GACNNNNGTC	1 cut(s)	389
BstPI	GGTNACC	2 cut(s)	1157, 1265
BstSCI	CCNGG	4 cut(s)	90, 779, 1223, 1352
BstSFI	CTRYAG	1 cut(s)	923
BstSLI	GKGCMC	1 cut(s)	1056
BstUI	CGCG	1 cut(s)	189
BstV2I	GAAGAC	1 cut(s)	1371
BstX2I	RGATCY	1 cut(s)	491
BstXI	CCANNNNNNTGG	1 cut(s)	836
BstYI	RGATCY	1 cut(s)	491
Bsu15I	ATCGAT	1 cut(s)	174
BsuRI	GGCC	9 cut(s)	95, 295, 714, 779, 854, 952, 981, 1054, 1061
BsuTUI	ATCGAT	1 cut(s)	174
BtgI	CCRYGG	2 cut(s)	1035, 1056
BtsCI	GGATG	3 cut(s)	387, 514, 548
BveI	ACCTGC	2 cut(s)	567, 1031
Cac8I	GCNNGC	6 cut(s)	41, 191, 468, 607, 1213, 1238
CciI	TCATGA	2 cut(s)	115, 879
CfoI	GCGC	3 cut(s)	8, 189, 824
Cfr10I	RCCGGY	3 cut(s)	295, 605, 1269
Cfr13I	GGNCC	8 cut(s)	284, 545, 951, 980, 1000, 1052, 1053, 1060
ClaI	ATCGAT	1 cut(s)	174
CseI	GACGC	3 cut(s)	115, 152, 1237
Csp6I	GTAC	5 cut(s)	678, 753, 931, 1030, 1204
CspAI	ACCGGT	1 cut(s)	1269
CviAII	CATG	5 cut(s)	58, 116, 205, 880, 1345
CviQI	GTAC	5 cut(s)	678, 753, 931, 1030, 1204
DdeI	CTNAG	6 cut(s)	26, 343, 1253, 1275, 1299, 1326
DpnI	GATC	7 cut(s)	173, 262, 493, 621, 690, 1360, 1394
DpnII	GATC	7 cut(s)	171, 260, 491, 619, 688, 1358, 1392
EaeI	YGGCCR	1 cut(s)	852
Eam1104I	CTCTTC	3 cut(s)	129, 153, 573
EarI	CTCTTC	3 cut(s)	129, 153, 573
Ecl136II	GAGCTC	1 cut(s)	877
Eco130I	CCWWGG	1 cut(s)	1003
Eco24I	GRGCYC	2 cut(s)	879, 1056
Eco47I	GGWCC	3 cut(s)	284, 545, 1000
Eco53kI	GAGCTC	1 cut(s)	877
Eco57I	CTGAAG	2 cut(s)	143, 357
Eco72I	CACGTG	1 cut(s)	1201
Eco88I	CYCGRG	1 cut(s)	541
Eco91I	GGTNACC	2 cut(s)	1157, 1265
EcoICRI	GAGCTC	1 cut(s)	877
EcoO65I	GGTNACC	2 cut(s)	1157, 1265
EcoRI	GAATTC	1 cut(s)	308
EcoRII	CCWGG	2 cut(s)	90, 779
EcoT14I	CCWWGG	1 cut(s)	1003
EcoT38I	GRGCYC	2 cut(s)	879, 1056
ErhI	CCWWGG	1 cut(s)	1003
Esp3I	CGTCTC	1 cut(s)	170
FaeI	CATG	5 cut(s)	61, 119, 208, 883, 1348
FaqI	GGGAC	1 cut(s)	1336
FatI	CATG	5 cut(s)	57, 115, 204, 879, 1344
FokI	GGATG	3 cut(s)	394, 501, 535
FriOI	GRGCYC	2 cut(s)	879, 1056
FspBI	CTAG	5 cut(s)	152, 467, 473, 945, 1004
GlaI	GCGC	3 cut(s)	7, 188, 823
GsaI	CCCAGC	3 cut(s)	957, 1076, 1323
HaeII	RGCGCY	1 cut(s)	825
HaeIII	GGCC	9 cut(s)	95, 295, 714, 779, 854, 952, 981, 1054, 1061
HgaI	GACGC	3 cut(s)	115, 152, 1237
HhaI	GCGC	3 cut(s)	8, 189, 824
Hin1I	GRCGYC	1 cut(s)	107
Hin1II	CATG	5 cut(s)	61, 119, 208, 883, 1348
Hin6I	GCGC	3 cut(s)	6, 187, 822
HinP1I	GCGC	3 cut(s)	6, 187, 822
HincII	GTYRAC	1 cut(s)	889
HindII	GTYRAC	1 cut(s)	889
HindIII	AAGCTT	1 cut(s)	252
HinfI	GANTC	2 cut(s)	813, 1244
HphI	GGTGA	8 cut(s)	6, 80, 449, 659, 721, 1151, 1277, 1346
Hpy166II	GTNNAC	2 cut(s)	889, 1204
Hpy188III	TCNNGA	9 cut(s)	116, 152, 169, 302, 572, 593, 623, 686, 880
Hpy8I	GTNNAC	2 cut(s)	889, 1204
Hpy99I	CGWCG	3 cut(s)	106, 109, 271
HpyAV	CCTTC	7 cut(s)	27, 190, 332, 520, 704, 769, 1309
HpyCH4III	ACNGT	5 cut(s)	362, 764, 893, 1100, 1370
HpyCH4IV	ACGT	1 cut(s)	1200
HpyCH4V	TGCA	8 cut(s)	39, 208, 416, 562, 805, 925, 1103, 1171
HpyF10VI	GCNNNNNNNGC	7 cut(s)	36, 230, 720, 802, 1082, 1147, 1237
HpyF3I	CTNAG	6 cut(s)	26, 343, 1253, 1275, 1299, 1326
HpySE526I	ACGT	1 cut(s)	1200
Hsp92I	GRCGYC	1 cut(s)	107
Hsp92II	CATG	5 cut(s)	61, 119, 208, 883, 1348
HspAI	GCGC	3 cut(s)	6, 187, 822
Kpn2I	TCCGGA	2 cut(s)	571, 592
KroI	GCCGGC	1 cut(s)	605
KroNI	GCCGGC	1 cut(s)	607
Kzo9I	GATC	7 cut(s)	171, 260, 491, 619, 688, 1358, 1392
LguI	GCTCTTC	1 cut(s)	153
LweI	GCATC	6 cut(s)	20, 166, 242, 403, 1020, 1290
MaeI	CTAG	5 cut(s)	152, 467, 473, 945, 1004
MaeII	ACGT	1 cut(s)	1200
MaeIII	GTNAC	4 cut(s)	767, 1043, 1157, 1265
MalI	GATC	7 cut(s)	173, 262, 493, 621, 690, 1360, 1394
MboI	GATC	7 cut(s)	171, 260, 491, 619, 688, 1358, 1392
MboII	GAAGA	7 cut(s)	146, 167, 170, 317, 560, 1298, 1376
MflI	RGATCY	1 cut(s)	491
MhlI	GDGCHC	2 cut(s)	879, 1056
MlsI	TGGCCA	1 cut(s)	854
MluCI	AATT	3 cut(s)	288, 308, 331
MluNI	TGGCCA	1 cut(s)	854
MmeI	TCCRAC	2 cut(s)	418, 1112
Mox20I	TGGCCA	1 cut(s)	854
MroI	TCCGGA	2 cut(s)	571, 592
MroNI	GCCGGC	1 cut(s)	605
MscI	TGGCCA	1 cut(s)	854
MseI	TTAA	3 cut(s)	66, 321, 912
MslI	CAYNNNNRTG	1 cut(s)	1098
Msp20I	TGGCCA	1 cut(s)	854
MspA1I	CMGCKG	2 cut(s)	994, 1168
MspR9I	CCNGG	4 cut(s)	92, 781, 1225, 1354
MvaI	CCWGG	2 cut(s)	92, 781
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	7 cut(s)	36, 230, 720, 802, 1082, 1147, 1237
NaeI	GCCGGC	1 cut(s)	607
NciI	CCSGG	2 cut(s)	1225, 1354
NdeII	GATC	7 cut(s)	171, 260, 491, 619, 688, 1358, 1392
NgoMIV	GCCGGC	1 cut(s)	605
NheI	GCTAGC	1 cut(s)	466
NlaIII	CATG	5 cut(s)	61, 119, 208, 883, 1348
NlaIV	GGNNCC	6 cut(s)	404, 508, 546, 938, 1020, 1054
NmeAIII	GCCGAG	1 cut(s)	564
NmuCI	GTSAC	4 cut(s)	767, 1043, 1157, 1265
NspV	TTCGAA	1 cut(s)	524
OliI	CACNNNNGTG	1 cut(s)	1098
PagI	TCATGA	2 cut(s)	115, 879
PciSI	GCTCTTC	1 cut(s)	153
PdiI	GCCGGC	1 cut(s)	607
PfeI	GAWTC	2 cut(s)	813, 1244
PfoI	TCCNGGA	1 cut(s)	1223
PinAI	ACCGGT	1 cut(s)	1269
PmaCI	CACGTG	1 cut(s)	1201
PmlI	CACGTG	1 cut(s)	1201
Ppu21I	YACGTR	1 cut(s)	1201
PshAI	GACNNNNGTC	1 cut(s)	389
Psp124BI	GAGCTC	1 cut(s)	879
Psp6I	CCWGG	2 cut(s)	90, 779
PspCI	CACGTG	1 cut(s)	1201
PspEI	GGTNACC	2 cut(s)	1157, 1265
PspFI	CCCAGC	3 cut(s)	953, 1072, 1319
PspGI	CCWGG	2 cut(s)	90, 779
PspN4I	GGNNCC	6 cut(s)	404, 508, 546, 938, 1020, 1054
PspOMI	GGGCCC	1 cut(s)	1052
PspPI	GGNCC	8 cut(s)	284, 545, 951, 980, 1000, 1052, 1053, 1060
PstI	CTGCAG	1 cut(s)	927
PsuI	RGATCY	1 cut(s)	491
PvuII	CAGCTG	2 cut(s)	994, 1168
RsaI	GTAC	5 cut(s)	679, 754, 932, 1031, 1205
RsaNI	GTAC	5 cut(s)	678, 753, 931, 1030, 1204
RseI	CAYNNNNRTG	1 cut(s)	1098
SacI	GAGCTC	1 cut(s)	879
SapI	GCTCTTC	1 cut(s)	153
SaqAI	TTAA	3 cut(s)	66, 321, 912
Sau3AI	GATC	7 cut(s)	171, 260, 491, 619, 688, 1358, 1392
Sau96I	GGNCC	8 cut(s)	284, 545, 951, 980, 1000, 1052, 1053, 1060
ScaI	AGTACT	1 cut(s)	754
ScrFI	CCNGG	4 cut(s)	92, 781, 1225, 1354
SduI	GDGCHC	2 cut(s)	879, 1056
SfaNI	GCATC	6 cut(s)	20, 166, 242, 403, 1020, 1290
SfcI	CTRYAG	1 cut(s)	923
SfuI	TTCGAA	1 cut(s)	524
SinI	GGWCC	3 cut(s)	284, 545, 1000
SmiMI	CAYNNNNRTG	1 cut(s)	1098
SmlI	CTYRAG	5 cut(s)	32, 167, 684, 846, 1400
SmoI	CTYRAG	5 cut(s)	32, 167, 684, 846, 1400
Sse9I	AATT	3 cut(s)	288, 308, 331
SsiI	CCGC	5 cut(s)	96, 666, 784, 989, 1148
SspMI	CTAG	5 cut(s)	152, 467, 473, 945, 1004
SstI	GAGCTC	1 cut(s)	879
StyD4I	CCNGG	4 cut(s)	90, 779, 1223, 1352
StyI	CCWWGG	1 cut(s)	1003
TaaI	ACNGT	5 cut(s)	362, 764, 893, 1100, 1370
TaiI	ACGT	1 cut(s)	1203
TaqI	TCGA	4 cut(s)	132, 174, 524, 1284
TasI	AATT	3 cut(s)	288, 308, 331
TatI	WGTACW	3 cut(s)	752, 930, 1203
TauI	GCSGC	3 cut(s)	98, 991, 1150
TfiI	GAWTC	2 cut(s)	813, 1244
Tru1I	TTAA	3 cut(s)	66, 321, 912
Tru9I	TTAA	3 cut(s)	66, 321, 912
TseFI	GTSAC	4 cut(s)	767, 1043, 1157, 1265
Tsp45I	GTSAC	4 cut(s)	767, 1043, 1157, 1265
TspDTI	ATGAA	3 cut(s)	301, 896, 921
TspGWI	ACGGA	1 cut(s)	513
VpaK11BI	GGWCC	3 cut(s)	284, 545, 1000
XapI	RAATTY	2 cut(s)	308, 331
XbaI	TCTAGA	1 cut(s)	151
XcmI	CCANNNNNNNNNTGG	1 cut(s)	836
XmaJI	CCTAGG	1 cut(s)	1003
XspI	CTAG	5 cut(s)	152, 467, 473, 945, 1004
ZrmI	AGTACT	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.