Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002518

Physical Location & Seq

Genomic Coordinates Reverse (-)

54642402 .. 54644745

Gene Structure 2344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0425200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGAAGGAATCACTCAACTTTCAACAGGTAAACTAATCTCTTTGTCTGAGCAAGAGCTGGTTGATTGTGATGTGAATGGTGGAGACCAAGGTTGTGAGGGTGGCTTGATGGACAATGCCTTTGAGTTCATCGATAAAAATCATGGACTTAGTACTGAGGCTAATTACCCCTACACCTGTGTTGATGGAACTTGCGGAACAAGCGGTCTGCCATTGATGCTAAACCATGATGTTACCGCAGTAGGTTATGGCGTCAGCGATGATGGGACCAAGTATTGGTTGGTTAAGAACTCATGGGGGGCACAATGGGGTGAAGAAGGGTACATAAGAATGCAAAGAGATGTTGCTGAGAAGGAAGGTGTTTCTGGAGGTACGGCTTCCGGTAAGACCACTGTGTGCGACATGATCATCCAGCAGCTTCACGATCAACGCGTCGTTCTTGTCAATCAGGATTCATTTTACCGTGGTTTGACACCTGAGGAGTCTGAACGAGTCCATGAGTATAATTTTGATCATCCTGATGCATTTGACACCGAACAGATGTTAGAATGTGTTCAAAAGCTGAAGTGCGGGCAGTCTGTCCATGTTCCAATTTATGATTTTAAGATACATCGACGCTGTTCTGATACTTTTCGGCAGGTGAATACTTCTGATGTCATCATCTTGGAGGGAATTCTGGTTTTCCATGACCAGCGCGTCCATAATTTGATGAACAGGTTTGATTTCCTCAGTCTAGTTTCTTCTGTCACTTTTCATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

253

Amino Acids

28.34

Weight (kDa)

4.73

Isoelectric Point (pI)

25.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	1 - 67	1.5e-18	Papain family cysteine protease
Peptidase_C1	PF00112	73 - 121	9.8e-17	Papain family cysteine protease
PRK	PF00485	120 - 240	2.1e-19	Phosphoribulokinase / Uridine kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09190
fragaria_vesca	FvH4_1g08040
malus_domestica	MD02G1085000.v1.1
prunus_persica	Prupe.7G204600_v2.0.a1
pyrus_communis	pycom02g06780 pycom02g20400
rosa_chinensis	RchiOBHm_Chr1g0349371 RchiOBHm_Chr1g0365421 RchiOBHm_Chr2g0094071 RchiOBHm_Chr2g0100501 RchiOBHm_Chr2g0145241 RchiOBHm_Chr5g0027681
rosa_laevigata	RLG00000016453 RLG00000016978 RLG00000028565
rosa_multiflora	Rmu_sc0000528.1_g000021 Rmu_sc0001942.1_g000078 Rmu_sc0001989.1_g000005 Rmu_sc0001989.1_g000006 Rmu_sc0002834.1_g000001 Rmu_sc0010460.1_g000009 Rmu_sc0015757.1_g000001 Rmu_sc0023774.1_g000001 Rmu_ssc0000469.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065660 Rroxscaffold_2G00147500
rosa_rugosa	Rorug01G0191200 Rorug01G0245800 Rorug01G0404500 Rorug02G0040700 Rorug02G0042900 Rorug02G0088700 Rorug02G0306900 Rorug02G0425200 RorugPtG0000800
rosa_samantha	Rh1BG121500 Rh2BG141500 Rh2BG455200 Rh2CG090800 Rh2CG143700 Rh2DG465200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	628
AasI	GACNNNNNNGTC	1 cut(s)	695
Acc36I	ACCTGC	1 cut(s)	628
AccB7I	CCANNNNNTGG	1 cut(s)	276
AccII	CGCG	2 cut(s)	432, 696
AciI	CCGC	4 cut(s)	195, 204, 237, 570
AcsI	RAATTY	1 cut(s)	672
AcuI	CTGAAG	1 cut(s)	584
AcyI	GRCGYC	1 cut(s)	252
AdeI	CACNNNGTG	1 cut(s)	396
AfaI	GTAC	3 cut(s)	154, 323, 373
AfiI	CCNNNNNNNGG	1 cut(s)	276
AflIII	ACRYGT	1 cut(s)	430
AgsI	TTSAA	2 cut(s)	24, 557
AluBI	AGCT	3 cut(s)	58, 418, 562
AluI	AGCT	3 cut(s)	58, 418, 562
Alw26I	GTCTC	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	415
ApoI	RAATTY	1 cut(s)	672
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
Asp700I	GAANNNNTTC	1 cut(s)	552
AspLEI	GCGC	1 cut(s)	696
AspS9I	GGNCC	1 cut(s)	267
AsuHPI	GGTGA	2 cut(s)	323, 652
AvaII	GGWCC	1 cut(s)	267
AxyI	CCTNAGG	1 cut(s)	477
BaeGI	GKGCMC	1 cut(s)	304
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	3 cut(s)	103, 179, 257
BceAI	ACGGC	1 cut(s)	390
BclI	TGATCA	2 cut(s)	405, 511
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	1 cut(s)	734
BfuAI	ACCTGC	1 cut(s)	628
BisI	GCNGC	1 cut(s)	416
BlsI	GCNGC	1 cut(s)	417
BmcAI	AGTACT	1 cut(s)	154
Bme18I	GGWCC	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	267
BmiI	GGNNCC	1 cut(s)	268
BmsI	GCATC	2 cut(s)	207, 511
BpmI	CTGGAG	1 cut(s)	387
Bsa29I	ATCGAT	1 cut(s)	132
BsaBI	GATNNNNATC	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	88, 463
BsaWI	WCCGGW	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse21I	CCTNAGG	1 cut(s)	477
Bse8I	GATNNNNATC	1 cut(s)	138
BseCI	ATCGAT	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	88, 463
BseGI	GGATG	2 cut(s)	408, 514
BseJI	GATNNNNATC	1 cut(s)	138
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseMII	CTCAG	5 cut(s)	39, 147, 339, 468, 742
BseRI	GAGGAG	1 cut(s)	494
BseSI	GKGCMC	1 cut(s)	304
BseXI	GCAGC	1 cut(s)	427
Bsh1236I	CGCG	2 cut(s)	432, 696
BshVI	ATCGAT	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	381
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmAI	GTCTC	1 cut(s)	78
BsmFI	GGGAC	1 cut(s)	280
BsmI	GAATGC	1 cut(s)	336
Bso31I	GGTCTC	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	3 cut(s)	405, 424, 511
BspACI	CCGC	4 cut(s)	195, 204, 237, 570
BspCNI	CTCAG	5 cut(s)	40, 148, 340, 469, 741
BspDI	ATCGAT	1 cut(s)	132
BspFNI	CGCG	2 cut(s)	432, 696
BspLI	GGNNCC	1 cut(s)	268
BspMI	ACCTGC	1 cut(s)	628
BspTNI	GGTCTC	1 cut(s)	78
BssECI	CCNNGG	2 cut(s)	88, 463
BssMI	GATC	3 cut(s)	405, 424, 511
BssNI	GRCGYC	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	88
Bst4CI	ACNGT	2 cut(s)	394, 464
BstACI	GRCGYC	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	572
BstDEI	CTNAG	6 cut(s)	48, 149, 156, 348, 477, 728
BstDSI	CCRYGG	1 cut(s)	463
BstF5I	GGATG	2 cut(s)	408, 514
BstFNI	CGCG	2 cut(s)	432, 696
BstHHI	GCGC	1 cut(s)	696
BstKTI	GATC	3 cut(s)	408, 427, 514
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	3 cut(s)	405, 424, 511
BstMWI	GCNNNNNNNGC	2 cut(s)	201, 217
BstSLI	GKGCMC	1 cut(s)	304
BstUI	CGCG	2 cut(s)	432, 696
BstV1I	GCAGC	1 cut(s)	427
Bsu15I	ATCGAT	1 cut(s)	132
Bsu36I	CCTNAGG	1 cut(s)	477
BsuTUI	ATCGAT	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	463
BtgZI	GCGATG	1 cut(s)	273
BtsCI	GGATG	2 cut(s)	408, 514
BtsIMutI	CAGTG	1 cut(s)	390
BveI	ACCTGC	1 cut(s)	628
Cac8I	GCNNGC	1 cut(s)	572
CfoI	GCGC	1 cut(s)	696
Cfr13I	GGNCC	1 cut(s)	267
ClaI	ATCGAT	1 cut(s)	132
CseI	GACGC	4 cut(s)	241, 421, 624, 685
Csp6I	GTAC	3 cut(s)	153, 322, 372
CviAII	CATG	7 cut(s)	143, 227, 294, 403, 497, 584, 686
CviJI	RGCY	6 cut(s)	58, 105, 161, 377, 418, 562
CviKI_1	RGCY	6 cut(s)	58, 105, 161, 377, 418, 562
CviQI	GTAC	3 cut(s)	153, 322, 372
DdeI	CTNAG	6 cut(s)	48, 149, 156, 348, 477, 728
DpnI	GATC	3 cut(s)	407, 426, 513
DpnII	GATC	3 cut(s)	405, 424, 511
DraIII	CACNNNGTG	1 cut(s)	396
DrdI	GACNNNNNNGTC	1 cut(s)	695
DseDI	GACNNNNNNGTC	1 cut(s)	695
Eco130I	CCWWGG	1 cut(s)	88
Eco31I	GGTCTC	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	267
Eco57I	CTGAAG	1 cut(s)	584
Eco81I	CCTNAGG	1 cut(s)	477
EcoRI	GAATTC	1 cut(s)	672
EcoT14I	CCWWGG	1 cut(s)	88
EcoT22I	ATGCAT	1 cut(s)	526
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	7 cut(s)	146, 230, 297, 406, 500, 587, 689
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	7 cut(s)	142, 226, 293, 402, 496, 583, 685
FauI	CCCGC	1 cut(s)	563
FbaI	TGATCA	2 cut(s)	405, 511
Fnu4HI	GCNGC	1 cut(s)	416
FokI	GGATG	2 cut(s)	395, 501
Fsp4HI	GCNGC	1 cut(s)	416
FspBI	CTAG	1 cut(s)	734
GlaI	GCGC	1 cut(s)	695
GluI	GCNGC	1 cut(s)	416
GsuI	CTGGAG	1 cut(s)	387
HapII	CCGG	1 cut(s)	381
HgaI	GACGC	4 cut(s)	241, 421, 624, 685
HhaI	GCGC	1 cut(s)	696
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	7 cut(s)	146, 230, 297, 406, 500, 587, 689
Hin6I	GCGC	1 cut(s)	694
HinP1I	GCGC	1 cut(s)	694
HinfI	GANTC	4 cut(s)	9, 452, 482, 492
HpaII	CCGG	1 cut(s)	381
HphI	GGTGA	2 cut(s)	323, 652
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	4 cut(s)	49, 487, 625, 652
Hpy188III	TCNNGA	4 cut(s)	366, 422, 449, 518
Hpy8I	GTNNAC	1 cut(s)	32
Hpy99I	CGWCG	2 cut(s)	437, 618
HpyAV	CCTTC	3 cut(s)	311, 346, 350
HpyCH4III	ACNGT	2 cut(s)	394, 464
HpyCH4V	TGCA	2 cut(s)	334, 524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	201, 217
HpyF3I	CTNAG	6 cut(s)	48, 149, 156, 348, 477, 728
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	7 cut(s)	146, 230, 297, 406, 500, 587, 689
HspAI	GCGC	1 cut(s)	694
Ksp22I	TGATCA	2 cut(s)	405, 511
Kzo9I	GATC	3 cut(s)	405, 424, 511
Lsp1109I	GCAGC	1 cut(s)	427
LweI	GCATC	2 cut(s)	207, 511
MaeI	CTAG	1 cut(s)	734
MaeIII	GTNAC	2 cut(s)	232, 745
MalI	GATC	3 cut(s)	407, 426, 513
MboI	GATC	3 cut(s)	405, 424, 511
MboII	GAAGA	2 cut(s)	326, 732
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	6 cut(s)	163, 505, 591, 672, 703, 757
MluI	ACGCGT	1 cut(s)	430
MlyI	GAGTC	2 cut(s)	491, 501
MnlI	CCTC	6 cut(s)	91, 151, 362, 472, 661, 737
Mph1103I	ATGCAT	1 cut(s)	526
MroXI	GAANNNNTTC	1 cut(s)	552
MseI	TTAA	2 cut(s)	285, 603
MslI	CAYNNNNRTG	2 cut(s)	329, 519
MspI	CCGG	1 cut(s)	381
Mva1269I	GAATGC	1 cut(s)	336
MvnI	CGCG	2 cut(s)	432, 696
MwoI	GCNNNNNNNGC	2 cut(s)	201, 217
NdeII	GATC	3 cut(s)	405, 424, 511
NlaIII	CATG	7 cut(s)	146, 230, 297, 406, 500, 587, 689
NlaIV	GGNNCC	1 cut(s)	268
NmuCI	GTSAC	1 cut(s)	745
NsiI	ATGCAT	1 cut(s)	526
PaqCI	CACCTGC	1 cut(s)	628
PcsI	WCGNNNNNNNCGW	1 cut(s)	429
PctI	GAATGC	1 cut(s)	336
PdmI	GAANNNNTTC	1 cut(s)	552
PfeI	GAWTC	2 cut(s)	9, 452
PflMI	CCANNNNNTGG	1 cut(s)	276
PkrI	GCNGC	1 cut(s)	417
PleI	GAGTC	2 cut(s)	490, 500
PpsI	GAGTC	2 cut(s)	490, 500
PspN4I	GGNNCC	1 cut(s)	268
PspPI	GGNCC	1 cut(s)	267
RsaI	GTAC	3 cut(s)	154, 323, 373
RsaNI	GTAC	3 cut(s)	153, 322, 372
RseI	CAYNNNNRTG	2 cut(s)	329, 519
SaqAI	TTAA	2 cut(s)	285, 603
SatI	GCNGC	1 cut(s)	416
Sau3AI	GATC	3 cut(s)	405, 424, 511
Sau96I	GGNCC	1 cut(s)	267
ScaI	AGTACT	1 cut(s)	154
SchI	GAGTC	2 cut(s)	491, 501
SduI	GDGCHC	1 cut(s)	304
SfaNI	GCATC	2 cut(s)	207, 511
SinI	GGWCC	1 cut(s)	267
SmiMI	CAYNNNNRTG	2 cut(s)	329, 519
Sse9I	AATT	6 cut(s)	163, 505, 591, 672, 703, 757
SsiI	CCGC	4 cut(s)	195, 204, 237, 570
SspMI	CTAG	1 cut(s)	734
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	2 cut(s)	394, 464
TaqI	TCGA	2 cut(s)	132, 613
TasI	AATT	6 cut(s)	163, 505, 591, 672, 703, 757
TatI	WGTACW	1 cut(s)	152
TfiI	GAWTC	2 cut(s)	9, 452
Tru1I	TTAA	2 cut(s)	285, 603
Tru9I	TTAA	2 cut(s)	285, 603
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	1 cut(s)	745
TseI	GCWGC	1 cut(s)	415
Tsp45I	GTSAC	1 cut(s)	745
TspDTI	ATGAA	4 cut(s)	118, 444, 725, 743
TspRI	CASTG	1 cut(s)	397
Van91I	CCANNNNNTGG	1 cut(s)	276
VpaK11BI	GGWCC	1 cut(s)	267
XapI	RAATTY	1 cut(s)	672
XcmI	CCANNNNNNNNNTGG	1 cut(s)	277
XmnI	GAANNNNTTC	1 cut(s)	552
XspI	CTAG	1 cut(s)	734
ZrmI	AGTACT	1 cut(s)	154
Zsp2I	ATGCAT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.