Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002518

Physical Location & Seq

Genomic Coordinates Forward (+)

87296050 .. 87296600

Gene Structure 551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00065660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTCTAAAAGAGATGTGATTGTTTGGAATTTGATGATTCGTGGGTTTTGCAAGAGTGGCAATGTCGATACCGGGTTGTGTTTGTTTAGGAAGATGGGTGAGAGGAATGTTGTTTTGTGGAACTCGATGATTTCGTGCTTAGTGCGGTATGGGAGGGATAGTGAAGCTTTGGGGTTTTTTAATGAGACATGGGAGCAGGGTTTTGAACCGGATGAGGCTACCGTGGTGTCGGTTTTTCCGCATTCTAAAGGGCTTATGCAAGAAGTTGTGTCCGTGGGGAACTCGCTTGTGAGTTTTTACCGTAAACATGGAGATTTGGATGCCGCATCTAGTGTTTTTGAACGAATAGCCCGGAAGGATGTTGTTTCCCGGAACTCTTTGATCTCGGGGTATGCATGTAATGGGAGAGGTGTACTTGGGAACAACTTGTTCGAGGAGATGATGCACATTAATTATGCATCATGGAACAATATTTATTTTGATAGAGATGGTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

165

Amino Acids

18.68

Weight (kDa)

6.29

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	3 - 32	6.2e-07	PPR repeat
PPR_2	PF13041	4 - 37	4e-07	PPR repeat family
PPR	PF01535	8 - 37	1.5e-07	PPR repeat
PPR_2	PF13041	35 - 77	9.1e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09190
fragaria_vesca	FvH4_1g08040
malus_domestica	MD02G1085000.v1.1
prunus_persica	Prupe.7G204600_v2.0.a1
pyrus_communis	pycom02g06780 pycom02g20400
rosa_chinensis	RchiOBHm_Chr1g0349371 RchiOBHm_Chr1g0365421 RchiOBHm_Chr2g0094071 RchiOBHm_Chr2g0100501 RchiOBHm_Chr2g0145241 RchiOBHm_Chr5g0027681
rosa_laevigata	RLG00000016453 RLG00000016978 RLG00000028565
rosa_multiflora	Rmu_sc0000528.1_g000021 Rmu_sc0001942.1_g000078 Rmu_sc0001989.1_g000005 Rmu_sc0001989.1_g000006 Rmu_sc0002834.1_g000001 Rmu_sc0010460.1_g000009 Rmu_sc0015757.1_g000001 Rmu_sc0023774.1_g000001 Rmu_ssc0000469.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065660 Rroxscaffold_2G00147500
rosa_rugosa	Rorug01G0191200 Rorug01G0245800 Rorug01G0404500 Rorug02G0040700 Rorug02G0042900 Rorug02G0088700 Rorug02G0306900 Rorug02G0425200 RorugPtG0000800
rosa_samantha	Rh1BG121500 Rh2BG141500 Rh2BG455200 Rh2CG090800 Rh2CG143700 Rh2DG465200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	145, 239, 324
AcsI	RAATTY	1 cut(s)	28
AfaI	GTAC	2 cut(s)	414, 493
AgsI	TTSAA	2 cut(s)	206, 341
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
Alw26I	GTCTC	1 cut(s)	179
Ama87I	CYCGRG	1 cut(s)	385
ApoI	RAATTY	1 cut(s)	28
AseI	ATTAAT	1 cut(s)	450
AsuC2I	CCSGG	3 cut(s)	73, 352, 370
AsuHPI	GGTGA	1 cut(s)	110
AvaI	CYCGRG	1 cut(s)	385
BccI	CCATC	2 cut(s)	88, 482
BcnI	CCSGG	3 cut(s)	73, 352, 370
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	1 cut(s)	330
BisI	GCNGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	325
Bme1390I	CCNGG	3 cut(s)	73, 352, 370
BmeT110I	CYCGRG	1 cut(s)	385
BmrFI	CCNGG	3 cut(s)	73, 352, 370
BmsI	GCATC	4 cut(s)	310, 335, 432, 467
BpuMI	CCSGG	3 cut(s)	73, 352, 370
BsaJI	CCNNGG	2 cut(s)	222, 273
BsaWI	WCCGGW	1 cut(s)	208
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bse3DI	GCAATG	1 cut(s)	67
BseDI	CCNNGG	2 cut(s)	222, 273
BseGI	GGATG	3 cut(s)	217, 325, 364
BseMI	GCAATG	1 cut(s)	67
BseRI	GAGGAG	1 cut(s)	449
BsiHKCI	CYCGRG	1 cut(s)	385
BsiSI	CCGG	4 cut(s)	72, 209, 352, 370
BsmAI	GTCTC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	241
BsoBI	CYCGRG	1 cut(s)	385
Bsp143I	GATC	1 cut(s)	381
BspACI	CCGC	3 cut(s)	145, 239, 324
BsrDI	GCAATG	1 cut(s)	67
BssECI	CCNNGG	2 cut(s)	222, 273
BssMI	GATC	1 cut(s)	381
Bst4CI	ACNGT	2 cut(s)	223, 302
BstDEI	CTNAG	1 cut(s)	139
BstDSI	CCRYGG	2 cut(s)	222, 273
BstF5I	GGATG	3 cut(s)	217, 325, 364
BstKTI	GATC	1 cut(s)	384
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	1 cut(s)	381
BstMWI	GCNNNNNNNGC	1 cut(s)	57
BstNSI	RCATGY	1 cut(s)	399
BstSCI	CCNGG	3 cut(s)	71, 350, 368
BtgI	CCRYGG	2 cut(s)	222, 273
BtsCI	GGATG	3 cut(s)	217, 325, 364
Csp6I	GTAC	2 cut(s)	413, 492
CviAII	CATG	4 cut(s)	189, 308, 396, 462
CviJI	RGCY	4 cut(s)	167, 218, 253, 350
CviKI_1	RGCY	4 cut(s)	167, 218, 253, 350
CviQI	GTAC	2 cut(s)	413, 492
DdeI	CTNAG	1 cut(s)	139
DpnI	GATC	1 cut(s)	383
DpnII	GATC	1 cut(s)	381
Eco88I	CYCGRG	1 cut(s)	385
EcoT22I	ATGCAT	2 cut(s)	397, 460
FaeI	CATG	4 cut(s)	192, 311, 399, 465
FaiI	YATR	8 cut(s)	150, 190, 257, 309, 393, 397, 456, 463
FatI	CATG	4 cut(s)	188, 307, 395, 461
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	3 cut(s)	224, 332, 371
Fsp4HI	GCNGC	1 cut(s)	324
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	1 cut(s)	324
HapII	CCGG	4 cut(s)	72, 209, 352, 370
Hin1II	CATG	4 cut(s)	192, 311, 399, 465
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	1 cut(s)	37
HpaII	CCGG	4 cut(s)	72, 209, 352, 370
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	2 cut(s)	305, 413
Hpy8I	GTNNAC	2 cut(s)	305, 413
HpyAV	CCTTC	1 cut(s)	349
HpyCH4III	ACNGT	2 cut(s)	223, 302
HpyCH4V	TGCA	5 cut(s)	51, 259, 395, 445, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	57
HpyF3I	CTNAG	1 cut(s)	139
Hsp92II	CATG	4 cut(s)	192, 311, 399, 465
Kzo9I	GATC	1 cut(s)	381
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	5 cut(s)	85, 182, 222, 365, 383
LweI	GCATC	4 cut(s)	310, 335, 432, 467
MaeI	CTAG	1 cut(s)	330
MalI	GATC	1 cut(s)	383
MboI	GATC	1 cut(s)	381
MboII	GAAGA	1 cut(s)	103
MluCI	AATT	2 cut(s)	28, 451
MnlI	CCTC	5 cut(s)	96, 147, 208, 401, 427
Mph1103I	ATGCAT	2 cut(s)	397, 460
MseI	TTAA	3 cut(s)	180, 450, 496
MspI	CCGG	4 cut(s)	72, 209, 352, 370
MspR9I	CCNGG	3 cut(s)	73, 352, 370
Mva1269I	GAATGC	1 cut(s)	241
MwoI	GCNNNNNNNGC	1 cut(s)	57
NciI	CCSGG	3 cut(s)	73, 352, 370
NdeII	GATC	1 cut(s)	381
NlaIII	CATG	4 cut(s)	192, 311, 399, 465
NsiI	ATGCAT	2 cut(s)	397, 460
NspI	RCATGY	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PctI	GAATGC	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	37
PfoI	TCCNGGA	1 cut(s)	368
PkrI	GCNGC	1 cut(s)	325
PshBI	ATTAAT	1 cut(s)	450
RsaI	GTAC	2 cut(s)	414, 493
RsaNI	GTAC	2 cut(s)	413, 492
SaqAI	TTAA	3 cut(s)	180, 450, 496
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	1 cut(s)	381
ScrFI	CCNGG	3 cut(s)	73, 352, 370
SetI	ASST	2 cut(s)	169, 412
SfaNI	GCATC	4 cut(s)	310, 335, 432, 467
Sse9I	AATT	2 cut(s)	28, 451
SsiI	CCGC	3 cut(s)	145, 239, 324
SspI	AATATT	1 cut(s)	472
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	3 cut(s)	71, 350, 368
TaaI	ACNGT	2 cut(s)	223, 302
TaqI	TCGA	3 cut(s)	66, 125, 432
TasI	AATT	2 cut(s)	28, 451
TatI	WGTACW	1 cut(s)	412
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	3 cut(s)	180, 450, 496
Tru9I	TTAA	3 cut(s)	180, 450, 496
TspGWI	ACGGA	1 cut(s)	262
VspI	ATTAAT	1 cut(s)	450
XapI	RAATTY	1 cut(s)	28
XceI	RCATGY	1 cut(s)	399
XspI	CTAG	1 cut(s)	330
Zsp2I	ATGCAT	2 cut(s)	397, 460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.