Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001989.1

Orthogroup ID

OG0002518

Physical Location & Seq

Genomic Coordinates Forward (+)

15607 .. 15894

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001989.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atgatcaagggcttctcgctctgccaccccttcgaaaaatccgtctccattttctcccatatgaaacgccgcggcgtttggcccaacgagtacacttttgctcctttactgaagtcctgctctgacatatcttattatagggtaggccagtgtgtgcatggagaggttttgagaatggggtttgagtggtttggttcagttcgggttgggatcattgagctgtatgtgacttgtggagggtgggtgatgcacagaaggtgttcgatgattcgtgggtttgagatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

95

Amino Acids

11.06

Weight (kDa)

9.17

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09190
fragaria_vesca	FvH4_1g08040
malus_domestica	MD02G1085000.v1.1
prunus_persica	Prupe.7G204600_v2.0.a1
pyrus_communis	pycom02g06780 pycom02g20400
rosa_chinensis	RchiOBHm_Chr1g0349371 RchiOBHm_Chr1g0365421 RchiOBHm_Chr2g0094071 RchiOBHm_Chr2g0100501 RchiOBHm_Chr2g0145241 RchiOBHm_Chr5g0027681
rosa_laevigata	RLG00000016453 RLG00000016978 RLG00000028565
rosa_multiflora	Rmu_sc0000528.1_g000021 Rmu_sc0001942.1_g000078 Rmu_sc0001989.1_g000005 Rmu_sc0001989.1_g000006 Rmu_sc0002834.1_g000001 Rmu_sc0010460.1_g000009 Rmu_sc0015757.1_g000001 Rmu_sc0023774.1_g000001 Rmu_ssc0000469.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065660 Rroxscaffold_2G00147500
rosa_rugosa	Rorug01G0191200 Rorug01G0245800 Rorug01G0404500 Rorug02G0040700 Rorug02G0042900 Rorug02G0088700 Rorug02G0306900 Rorug02G0425200 RorugPtG0000800
rosa_samantha	Rh1BG121500 Rh2BG141500 Rh2BG455200 Rh2CG090800 Rh2CG143700 Rh2DG465200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	72
AciI	CCGC	2 cut(s)	70, 72
AclWI	GGATC	1 cut(s)	218
AcuI	CTGAAG	1 cut(s)	131
AfaI	GTAC	1 cut(s)	92
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	1 cut(s)	218
AoxI	GGCC	2 cut(s)	80, 145
ArsI	GACNNNNNNTTYG	2 cut(s)	27, 59
Asp700I	GAANNNNTTC	1 cut(s)	259
AspS9I	GGNCC	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	256
AsuII	TTCGAA	1 cut(s)	33
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	49
BisI	GCNGC	2 cut(s)	70, 73
BlsI	GCNGC	2 cut(s)	71, 74
BmgT120I	GGNCC	1 cut(s)	81
BmsI	GCATC	1 cut(s)	237
Bpu14I	TTCGAA	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	70
BsaXI	ACNNNNNCTCC	4 cut(s)	85, 115, 228, 258
Bse1I	ACTGG	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	70
BseNI	ACTGG	1 cut(s)	148
Bsh1236I	CGCG	1 cut(s)	72
BshFI	GGCC	2 cut(s)	82, 147
BsmAI	GTCTC	1 cut(s)	49
BsmBI	CGTCTC	1 cut(s)	49
BsnI	GGCC	2 cut(s)	82, 147
Bsp119I	TTCGAA	1 cut(s)	33
Bsp143I	GATC	2 cut(s)	3, 210
BspACI	CCGC	2 cut(s)	70, 72
BspANI	GGCC	2 cut(s)	82, 147
BspFNI	CGCG	1 cut(s)	72
BspPI	GGATC	1 cut(s)	218
BspT104I	TTCGAA	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	2 cut(s)	3, 210
BstBI	TTCGAA	1 cut(s)	33
BstDSI	CCRYGG	1 cut(s)	70
BstFNI	CGCG	1 cut(s)	72
BstKTI	GATC	2 cut(s)	6, 213
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	2 cut(s)	3, 210
BstUI	CGCG	1 cut(s)	72
BsuRI	GGCC	2 cut(s)	82, 147
BtgI	CCRYGG	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	81
Cfr42I	CCGCGG	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	4 cut(s)	12, 82, 147, 220
CviKI_1	RGCY	4 cut(s)	12, 82, 147, 220
CviQI	GTAC	1 cut(s)	91
DpnI	GATC	2 cut(s)	5, 212
DpnII	GATC	2 cut(s)	3, 210
Eco57I	CTGAAG	1 cut(s)	131
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	1 cut(s)	161
FaiI	YATR	6 cut(s)	60, 62, 128, 138, 159, 225
FatI	CATG	1 cut(s)	157
FauNDI	CATATG	1 cut(s)	60
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	70, 73
Fsp4HI	GCNGC	2 cut(s)	70, 73
GluI	GCNGC	2 cut(s)	70, 73
HaeIII	GGCC	2 cut(s)	82, 147
Hin1II	CATG	1 cut(s)	161
HinfI	GANTC	1 cut(s)	268
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188I	TCNGA	1 cut(s)	124
Hpy8I	GTNNAC	1 cut(s)	93
HpyAV	CCTTC	2 cut(s)	40, 249
HpyCH4V	TGCA	2 cut(s)	157, 250
Hsp92II	CATG	1 cut(s)	161
Ksp22I	TGATCA	1 cut(s)	3
KspI	CCGCGG	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	3, 210
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	2 cut(s)	130, 161
LweI	GCATC	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	2 cut(s)	5, 212
MboI	GATC	2 cut(s)	3, 210
MnlI	CCTC	2 cut(s)	157, 230
MroXI	GAANNNNTTC	1 cut(s)	259
MspA1I	CMGCKG	1 cut(s)	72
MvnI	CGCG	1 cut(s)	72
NdeI	CATATG	1 cut(s)	60
NdeII	GATC	2 cut(s)	3, 210
NlaIII	CATG	1 cut(s)	161
NmuCI	GTSAC	1 cut(s)	226
NspV	TTCGAA	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	268
PkrI	GCNGC	2 cut(s)	71, 74
PspPI	GGNCC	1 cut(s)	81
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SacII	CCGCGG	1 cut(s)	73
SatI	GCNGC	2 cut(s)	70, 73
Sau3AI	GATC	2 cut(s)	3, 210
Sau96I	GGNCC	1 cut(s)	81
SetI	ASST	3 cut(s)	168, 222, 260
SfaNI	GCATC	1 cut(s)	237
Sfr303I	CCGCGG	1 cut(s)	73
SfuI	TTCGAA	1 cut(s)	33
SgrBI	CCGCGG	1 cut(s)	73
SsiI	CCGC	2 cut(s)	70, 72
TaqI	TCGA	2 cut(s)	33, 263
TatI	WGTACW	1 cut(s)	90
TauI	GCSGC	2 cut(s)	72, 75
TfiI	GAWTC	1 cut(s)	268
TscAI	CASTG	1 cut(s)	155
TseFI	GTSAC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	77
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	1 cut(s)	155
XcmI	CCANNNNNNNNNTGG	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.