Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002518

Physical Location & Seq

Genomic Coordinates Forward (+)

26455441 .. 26456026

Gene Structure 586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0191200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGATTTTTCATCATCGTCAAGCGGATCTTCTTCAACCCAATTCAACCCTGACATTTTCATGGGTTTGCGTTTTCCTGGAATTGCTAGAACAACTTCAATCCCGAAAGGCTTTTTTGCAGTATATGTGGGAGAGAGTCAGAAGAAGCGATTTGTGATTCCAATCTCTTTTCTGAACCATCCTTTATTCCTGGATTTGTTGAGTCAAGCTGAAGAAGAACTTGAATACAATCATCCAATGGGCGGCATCACTATTCCTTGCGGTGAAGACACCTTCCTTGACCTTACTTCCCGCTTAAGTGTACAGATGAGGTTTGGGCTGTCAAATTTGACAGAAAGCCTCAAATTGTCAAATATACGTGTAAATGGGATATGGGTTGAAGAGGAATTTGGGCAGTCAAAAGTAGATGTTGGGTTGCGAGATGGCAAAAGACCATCTCCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

148

Amino Acids

16.43

Weight (kDa)

5.37

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	30 - 98	5.6e-20	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09190
fragaria_vesca	FvH4_1g08040
malus_domestica	MD02G1085000.v1.1
prunus_persica	Prupe.7G204600_v2.0.a1
pyrus_communis	pycom02g06780 pycom02g20400
rosa_chinensis	RchiOBHm_Chr1g0349371 RchiOBHm_Chr1g0365421 RchiOBHm_Chr2g0094071 RchiOBHm_Chr2g0100501 RchiOBHm_Chr2g0145241 RchiOBHm_Chr5g0027681
rosa_laevigata	RLG00000016453 RLG00000016978 RLG00000028565
rosa_multiflora	Rmu_sc0000528.1_g000021 Rmu_sc0001942.1_g000078 Rmu_sc0001989.1_g000005 Rmu_sc0001989.1_g000006 Rmu_sc0002834.1_g000001 Rmu_sc0010460.1_g000009 Rmu_sc0015757.1_g000001 Rmu_sc0023774.1_g000001 Rmu_ssc0000469.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065660 Rroxscaffold_2G00147500
rosa_rugosa	Rorug01G0191200 Rorug01G0245800 Rorug01G0404500 Rorug02G0040700 Rorug02G0042900 Rorug02G0088700 Rorug02G0306900 Rorug02G0425200 RorugPtG0000800
rosa_samantha	Rh1BG121500 Rh2BG141500 Rh2BG455200 Rh2CG090800 Rh2CG143700 Rh2DG465200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	24, 243, 261, 292
AclWI	GGATC	1 cut(s)	34
AcsI	RAATTY	2 cut(s)	325, 386
AcuI	CTGAAG	1 cut(s)	231
AfaI	GTAC	1 cut(s)	303
AfiI	CCNNNNNNNGG	1 cut(s)	242
AflII	CTTAAG	1 cut(s)	295
AflIII	ACRYGT	1 cut(s)	358
AgsI	TTSAA	5 cut(s)	36, 46, 99, 224, 380
AjnI	CCWGG	2 cut(s)	76, 189
AjuI	GAANNNNNNNTTGG	2 cut(s)	372, 404
AluBI	AGCT	1 cut(s)	209
AluI	AGCT	1 cut(s)	209
AlwI	GGATC	1 cut(s)	34
ApoI	RAATTY	2 cut(s)	325, 386
Asp700I	GAANNNNTTC	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	273
BccI	CCATC	3 cut(s)	186, 416, 442
BciT130I	CCWGG	2 cut(s)	78, 191
BfaI	CTAG	1 cut(s)	87
BfrI	CTTAAG	1 cut(s)	295
BisI	GCNGC	1 cut(s)	244
BlsI	GCNGC	1 cut(s)	245
Bme1390I	CCNGG	2 cut(s)	78, 191
BmrFI	CCNGG	2 cut(s)	78, 191
BmsI	GCATC	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	273
BsaAI	YACGTR	1 cut(s)	359
BsaBI	GATNNNNATC	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
Bse8I	GATNNNNATC	1 cut(s)	161
BseBI	CCWGG	2 cut(s)	78, 191
BseGI	GGATG	2 cut(s)	178, 232
BseJI	GATNNNNATC	1 cut(s)	161
BseLI	CCNNNNNNNGG	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	242
Bsp1407I	TGTACA	1 cut(s)	301
Bsp143I	GATC	1 cut(s)	26
BspACI	CCGC	4 cut(s)	24, 243, 261, 292
BspPI	GGATC	1 cut(s)	34
BspTI	CTTAAG	1 cut(s)	295
BsrGI	TGTACA	1 cut(s)	301
BssMI	GATC	1 cut(s)	26
Bst2UI	CCWGG	2 cut(s)	78, 191
Bst6I	CTCTTC	1 cut(s)	375
BstAFI	CTTAAG	1 cut(s)	295
BstAUI	TGTACA	1 cut(s)	301
BstBAI	YACGTR	1 cut(s)	359
BstDEI	CTNAG	1 cut(s)	444
BstF5I	GGATG	2 cut(s)	178, 232
BstKTI	GATC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	26
BstNI	CCWGG	2 cut(s)	78, 191
BstSCI	CCNGG	2 cut(s)	76, 189
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
BtsCI	GGATG	2 cut(s)	178, 232
Csp6I	GTAC	1 cut(s)	302
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	4 cut(s)	111, 209, 319, 339
CviKI_1	RGCY	4 cut(s)	111, 209, 319, 339
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	1 cut(s)	444
DpnI	GATC	1 cut(s)	28
DpnII	GATC	1 cut(s)	26
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco57I	CTGAAG	1 cut(s)	231
EcoRII	CCWGG	2 cut(s)	76, 189
FaeI	CATG	1 cut(s)	64
FaiI	YATR	5 cut(s)	62, 124, 126, 356, 373
FalI	AAGNNNNNCTT	4 cut(s)	13, 45, 204, 236
FatI	CATG	1 cut(s)	60
FauI	CCCGC	1 cut(s)	299
Fnu4HI	GCNGC	1 cut(s)	244
FokI	GGATG	2 cut(s)	165, 219
Fsp4HI	GCNGC	1 cut(s)	244
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	1 cut(s)	244
Hin1II	CATG	1 cut(s)	64
HinfI	GANTC	3 cut(s)	136, 157, 202
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188I	TCNGA	2 cut(s)	141, 174
Hpy188III	TCNNGA	1 cut(s)	103
Hpy8I	GTNNAC	1 cut(s)	302
HpyAV	CCTTC	1 cut(s)	283
HpyCH4IV	ACGT	1 cut(s)	358
HpyCH4V	TGCA	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	444
HpySE526I	ACGT	1 cut(s)	358
Hsp92II	CATG	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	26
LpnPI	CCDG	5 cut(s)	63, 63, 90, 176, 203
LweI	GCATC	1 cut(s)	255
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	1 cut(s)	358
MalI	GATC	1 cut(s)	28
MboI	GATC	1 cut(s)	26
MboII	GAAGA	7 cut(s)	21, 24, 154, 224, 227, 278, 392
MflI	RGATCY	1 cut(s)	26
MluCI	AATT	5 cut(s)	41, 81, 325, 344, 386
MlyI	GAGTC	2 cut(s)	145, 211
MnlI	CCTC	3 cut(s)	303, 350, 376
MroXI	GAANNNNTTC	1 cut(s)	94
MseI	TTAA	1 cut(s)	296
MslI	CAYNNNNRTG	1 cut(s)	59
MspCI	CTTAAG	1 cut(s)	295
MspR9I	CCNGG	2 cut(s)	78, 191
MvaI	CCWGG	2 cut(s)	78, 191
NdeII	GATC	1 cut(s)	26
NlaIII	CATG	1 cut(s)	64
PdmI	GAANNNNTTC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	157
PfoI	TCCNGGA	2 cut(s)	76, 189
PkrI	GCNGC	1 cut(s)	245
PleI	GAGTC	2 cut(s)	144, 210
PpsI	GAGTC	2 cut(s)	144, 210
Ppu21I	YACGTR	1 cut(s)	359
Psp6I	CCWGG	2 cut(s)	76, 189
PspGI	CCWGG	2 cut(s)	76, 189
PsuI	RGATCY	1 cut(s)	26
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
RseI	CAYNNNNRTG	1 cut(s)	59
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	1 cut(s)	244
Sau3AI	GATC	1 cut(s)	26
SchI	GAGTC	2 cut(s)	145, 211
ScrFI	CCNGG	2 cut(s)	78, 191
SetI	ASST	5 cut(s)	211, 275, 285, 314, 361
SfaNI	GCATC	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
Sse9I	AATT	5 cut(s)	41, 81, 325, 344, 386
SsiI	CCGC	4 cut(s)	24, 243, 261, 292
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	2 cut(s)	76, 189
TaiI	ACGT	1 cut(s)	361
TasI	AATT	5 cut(s)	41, 81, 325, 344, 386
TatI	WGTACW	1 cut(s)	301
TauI	GCSGC	1 cut(s)	246
TfiI	GAWTC	1 cut(s)	157
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TspDTI	ATGAA	1 cut(s)	49
Vha464I	CTTAAG	1 cut(s)	295
XapI	RAATTY	2 cut(s)	325, 386
XmnI	GAANNNNTTC	1 cut(s)	94
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.