pycom02g06780

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
4708634 .. 4710088
1455 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g06780.1

Sequence Viewer

Length: 1455 bp
ATGAGCAGAGCATGCCGTGAGGCGGAGCGGCGAGTCCTCCGCCTCCTCCATGGCCACAAAACCCGAACCCATCTCCGCCAAATCCACGCCCACCTCCTCCGCCATGGCCTTGGCCAAGTCAATCAAGTCCTCGCCCACTTCGTCTCCGTTTGTTGGTCACTCAACAAAATGAGCTACGCAAATCGCATTTTCAATCAAACCCACAACCCCAACATCCTCCTCTTCAATTCCATGGTCAAAGGATTCTCACTCTGCAAACCCTTCGAACAATCCCTATACATTTTCTCTCTCATGAAATACCAGAGCATCCGCCCCGACGAGTACACTTACGCGCCGTTGCTCAAGTCATGCTCGAACATTTGCGATTACAGACTAGGCCAGTGCGTCCATGGACAGATTCTAAGAGTTGGGTTTGAATGGTTTAGTTCGATTAGGATTGGAGTTATTGAGCTTTATGTAACTTGTGGGAGAATGGGGGATGCTGAGAAGGTGTTTGATGCTTTGTCTCAGAGAGATATCATCGTTTGGAATTTGATGGTTCGTGGGTTTTGCAAGACAGGTGATGTCGATAAGGGATTGTGTTTGTTTAAGCAGATGGGTGAACGGAATGTTGTTTCTTGGAACTCGATGATTTCTTGCTTAGCGCATAGTGGGCGAGATAGTGAGGCTTTGGAACTTTTTCGTGAGATGCTTGATCAGAGTTTTGAACCAGATGAAGTGACTGTGGTTTCGGTTTTGCCTGCGTGTGCTCATTTGGAAGCTGTTGAAGTTGGGAAATGGATACACTCTTATACGGATTCTAAAGGACTTCTGCAAGAAGTTGTATCAGTAGGGAATTCACTTATAAACTTTTATTTTAAATGTGGAGACTTGGACGCTGCTTGTAGTGTTTTCGACCAAATGCCTTGCAAAAACGTTGTTTCCTTGAACACTCTGATTTCGGGATATGCTTTTAATGGGAAAGGTGAACTTGGGATCAGCTTGTTCGAGGAGATGATAAGCAAGGGCGAGAGACCTAATGATGCAACATTTGTTGGGGTTTTAACATGTTGTGCTCATGCAGGCTTGGTGGAAAAGGGAAAGGATTTGTTTGCTTCAATGATTGAGACTCACCAAATTGAGCCAAAACTAGAGCATTATGGATGTATGGTTGATGTTCTCGGGCGAAGCGGACAGGTGAGGGAGGCTCATGACCTGATTAAGAGTATGCCTACGAAACCGAATGCTGCTTTATGGGGTGCACTGCTAGGTGCTTGCTCTAGTCACGATGAAGTAGAGCTCGCGGAACTTGCAGCTAAAGAGCTTATCAATATCGAACCATGGAATTCAGGTAATTATGTGTTGCTGTCAAATATTTATGCAGAAGAAGGCAGGTGGGACGAAGTTGAGAAAGTTAGAGATTTGATGAGGGAAAACTGCATCATAAAAGCACCAGGGCAGAGTGCAATTGAGTAG

Protein Analysis

485

Amino Acids

54.34

Weight (kDa)

6.12

Isoelectric Point (pI)

44.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 172 - 204 4.8e-06 PPR repeat family
PPR PF01535 175 - 204 8e-07 PPR repeat
PPR_2 PF13041 202 - 251 5.5e-11 PPR repeat family
PPR PF01535 205 - 232 5.3e-08 PPR repeat
PPR_2 PF13041 304 - 353 4.9e-11 PPR repeat family
PPR PF01535 307 - 336 1.2e-06 PPR repeat
E_motif PF20431 422 - 484 3.9e-22 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 845
AarI CACCTGC 1 cut(s) 1362
Acc36I ACCTGC 1 cut(s) 1362
AccBSI CCGCTC 1 cut(s) 28
AccII CGCG 2 cut(s) 332, 1283
AciI CCGC 8 cut(s) 23, 28, 40, 76, 100, 310, 1170, 1283
AclI AACGTT 1 cut(s) 915
AclWI GGATC 1 cut(s) 983
AcoI YGGCCR 2 cut(s) 52, 112
AcsI RAATTY 3 cut(s) 529, 835, 1324
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 2 cut(s) 22, 153
AflIII ACRYGT 1 cut(s) 1046
AgsI TTSAA 7 cut(s) 193, 226, 416, 707, 767, 928, 1098
AjnI CCWGG 1 cut(s) 1432
AluBI AGCT 7 cut(s) 174, 451, 761, 981, 1279, 1295, 1303
AluI AGCT 7 cut(s) 174, 451, 761, 981, 1279, 1295, 1303
Alw21I GWGCWC 4 cut(s) 751, 1057, 1243, 1281
Alw26I GTCTC 5 cut(s) 148, 510, 861, 1006, 1100
Alw44I GTGCAC 1 cut(s) 1239
AlwI GGATC 1 cut(s) 983
Ama87I CYCGRG 1 cut(s) 1160
AoxI GGCC 4 cut(s) 52, 106, 112, 376
ApaLI GTGCAC 1 cut(s) 1239
ApeKI GCWGC 3 cut(s) 878, 1226, 1292
ApoI RAATTY 3 cut(s) 529, 835, 1324
ArsI GACNNNNNNTTYG 2 cut(s) 712, 744
Asp700I GAANNNNTTC 1 cut(s) 678
AspLEI GCGC 2 cut(s) 334, 646
AsuHPI GGTGA 5 cut(s) 572, 611, 977, 1103, 1189
AsuII TTCGAA 1 cut(s) 264
AvaI CYCGRG 1 cut(s) 1160
BaeGI GKGCMC 1 cut(s) 1243
BalI TGGCCA 2 cut(s) 54, 114
BanII GRGCYC 1 cut(s) 1281
Bbv12I GWGCWC 4 cut(s) 751, 1057, 1243, 1281
BbvI GCAGC 3 cut(s) 865, 1213, 1304
BccI CCATC 3 cut(s) 78, 529, 589
BceAI ACGGC 1 cut(s) 319
BcgI CGANNNNNNTGC 2 cut(s) 244, 278
BciT130I CCWGG 1 cut(s) 1434
BciVI GTATCC 1 cut(s) 774
BclI TGATCA 1 cut(s) 694
BcoDI GTCTC 5 cut(s) 148, 510, 861, 1006, 1100
BfaI CTAG 4 cut(s) 374, 1130, 1247, 1260
BfuAI ACCTGC 1 cut(s) 1362
BfuI GTATCC 1 cut(s) 774
BisI GCNGC 4 cut(s) 29, 879, 1227, 1293
BlpI GCTNAGC 1 cut(s) 640
BlsI GCNGC 4 cut(s) 30, 880, 1228, 1294
Bme1390I CCNGG 1 cut(s) 1434
BmeT110I CYCGRG 1 cut(s) 1160
BmrFI CCNGG 1 cut(s) 1434
BmsI GCATC 6 cut(s) 315, 469, 487, 678, 1012, 1428
BplI GAGNNNNNCTC 2 cut(s) 1171, 1203
Bpu1102I GCTNAGC 1 cut(s) 640
Bpu14I TTCGAA 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 326
BsaI GGTCTC 1 cut(s) 1006
BsaJI CCNNGG 7 cut(s) 49, 103, 109, 231, 388, 1319, 1433
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 153
Bse1I ACTGG 1 cut(s) 379
BseBI CCWGG 1 cut(s) 1434
BseDI CCNNGG 7 cut(s) 49, 103, 109, 231, 388, 1319, 1433
BseGI GGATG 4 cut(s) 213, 306, 484, 1148
BseLI CCNNNNNNNGG 2 cut(s) 22, 153
BseMII CTCAG 2 cut(s) 474, 521
BseNI ACTGG 1 cut(s) 379
BseRI GAGGAG 4 cut(s) 35, 86, 209, 1004
BseSI GKGCMC 1 cut(s) 1243
BseXI GCAGC 3 cut(s) 865, 1213, 1304
Bsh1236I CGCG 2 cut(s) 332, 1283
BshFI GGCC 4 cut(s) 54, 108, 114, 378
BsiHKAI GWGCWC 4 cut(s) 751, 1057, 1243, 1281
BsiHKCI CYCGRG 1 cut(s) 1160
BslFI GGGAC 1 cut(s) 1391
BslI CCNNNNNNNGG 2 cut(s) 22, 153
BsmAI GTCTC 5 cut(s) 148, 510, 861, 1006, 1100
BsmBI CGTCTC 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 1391
BsmI GAATGC 1 cut(s) 1228
BsnI GGCC 4 cut(s) 54, 108, 114, 378
Bso31I GGTCTC 1 cut(s) 1006
BsoBI CYCGRG 1 cut(s) 1160
Bsp119I TTCGAA 1 cut(s) 264
Bsp1286I GDGCHC 4 cut(s) 751, 1057, 1243, 1281
Bsp143I GATC 2 cut(s) 694, 975
Bsp1720I GCTNAGC 1 cut(s) 640
Bsp19I CCATGG 5 cut(s) 49, 103, 231, 388, 1319
BspACI CCGC 8 cut(s) 23, 28, 40, 76, 100, 310, 1170, 1283
BspANI GGCC 4 cut(s) 54, 108, 114, 378
BspCNI CTCAG 2 cut(s) 475, 520
BspFNI CGCG 2 cut(s) 332, 1283
BspHI TCATGA 2 cut(s) 291, 1189
BspMI ACCTGC 1 cut(s) 1362
BspPI GGATC 1 cut(s) 983
BspT104I TTCGAA 1 cut(s) 264
BspTNI GGTCTC 1 cut(s) 1006
BsrBI CCGCTC 1 cut(s) 28
BsrI ACTGG 1 cut(s) 379
BssECI CCNNGG 7 cut(s) 49, 103, 109, 231, 388, 1319, 1433
BssMI GATC 2 cut(s) 694, 975
BssT1I CCWWGG 6 cut(s) 49, 103, 109, 231, 388, 1319
Bst2UI CCWGG 1 cut(s) 1434
Bst4CI ACNGT 1 cut(s) 724
Bst6I CTCTTC 1 cut(s) 227
BstAPI GCANNNNNTGC 1 cut(s) 12
BstBI TTCGAA 1 cut(s) 264
BstC8I GCNNGC 5 cut(s) 13, 741, 1063, 1255, 1281
BstDEI CTNAG 4 cut(s) 401, 483, 507, 640
BstDSI CCRYGG 5 cut(s) 49, 103, 231, 388, 1319
BstF5I GGATG 4 cut(s) 213, 306, 484, 1148
BstFNI CGCG 2 cut(s) 332, 1283
BstHHI GCGC 2 cut(s) 334, 646
BstKTI GATC 2 cut(s) 697, 978
BstMAI GTCTC 5 cut(s) 148, 510, 861, 1006, 1100
BstMBI GATC 2 cut(s) 694, 975
BstMWI GCNNNNNNNGC 3 cut(s) 12, 652, 1289
BstNI CCWGG 1 cut(s) 1434
BstNSI RCATGY 2 cut(s) 15, 1050
BstSCI CCNGG 1 cut(s) 1432
BstSLI GKGCMC 1 cut(s) 1243
BstUI CGCG 2 cut(s) 332, 1283
BstV1I GCAGC 3 cut(s) 865, 1213, 1304
BstXI CCANNNNNNTGG 1 cut(s) 110
BsuI GTATCC 1 cut(s) 774
BsuRI GGCC 4 cut(s) 54, 108, 114, 378
BtgI CCRYGG 5 cut(s) 49, 103, 231, 388, 1319
BtsCI GGATG 4 cut(s) 213, 306, 484, 1148
BtsI GCAGTG 1 cut(s) 1241
BtsIMutI CAGTG 2 cut(s) 386, 1241
BveI ACCTGC 1 cut(s) 1362
Cac8I GCNNGC 5 cut(s) 13, 741, 1063, 1255, 1281
CciI TCATGA 2 cut(s) 291, 1189
CfoI GCGC 2 cut(s) 334, 646
CseI GACGC 2 cut(s) 373, 884
Csp6I GTAC 1 cut(s) 322
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 4 cut(s) 401, 483, 507, 640
DpnI GATC 2 cut(s) 696, 977
DpnII GATC 2 cut(s) 694, 975
DraI TTTAAA 1 cut(s) 859
EaeI YGGCCR 2 cut(s) 52, 112
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
EciI GGCGGA 5 cut(s) 29, 38, 65, 89, 299
Ecl136II GAGCTC 1 cut(s) 1279
Eco130I CCWWGG 6 cut(s) 49, 103, 109, 231, 388, 1319
Eco24I GRGCYC 1 cut(s) 1281
Eco31I GGTCTC 1 cut(s) 1006
Eco32I GATATC 1 cut(s) 517
Eco53kI GAGCTC 1 cut(s) 1279
Eco88I CYCGRG 1 cut(s) 1160
EcoICRI GAGCTC 1 cut(s) 1279
EcoRI GAATTC 2 cut(s) 835, 1324
EcoRII CCWGG 1 cut(s) 1432
EcoRV GATATC 1 cut(s) 517
EcoT14I CCWWGG 6 cut(s) 49, 103, 109, 231, 388, 1319
EcoT38I GRGCYC 1 cut(s) 1281
ErhI CCWWGG 6 cut(s) 49, 103, 109, 231, 388, 1319
Esp3I CGTCTC 1 cut(s) 148
FalI AAGNNNNNCTT 2 cut(s) 954, 986
FaqI GGGAC 1 cut(s) 1391
FbaI TGATCA 1 cut(s) 694
Fnu4HI GCNGC 4 cut(s) 29, 879, 1227, 1293
FokI GGATG 4 cut(s) 200, 293, 491, 1155
FriOI GRGCYC 1 cut(s) 1281
Fsp4HI GCNGC 4 cut(s) 29, 879, 1227, 1293
FspBI CTAG 4 cut(s) 374, 1130, 1247, 1260
GlaI GCGC 2 cut(s) 333, 645
GluI GCNGC 4 cut(s) 29, 879, 1227, 1293
HaeIII GGCC 4 cut(s) 54, 108, 114, 378
HgaI GACGC 2 cut(s) 373, 884
HhaI GCGC 2 cut(s) 334, 646
Hin6I GCGC 2 cut(s) 332, 644
HinP1I GCGC 2 cut(s) 332, 644
HinfI GANTC 5 cut(s) 33, 243, 397, 797, 1108
HphI GGTGA 5 cut(s) 572, 611, 977, 1103, 1189
Hpy166II GTNNAC 4 cut(s) 324, 602, 968, 1241
Hpy188I TCNGA 3 cut(s) 510, 699, 936
Hpy188III TCNNGA 5 cut(s) 292, 683, 942, 1190, 1265
Hpy8I GTNNAC 4 cut(s) 324, 602, 968, 1241
Hpy99I CGWCG 1 cut(s) 320
HpyAV CCTTC 3 cut(s) 271, 481, 1361
HpyCH4III ACNGT 1 cut(s) 724
HpyCH4IV ACGT 1 cut(s) 915
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 652, 1289
HpyF3I CTNAG 4 cut(s) 401, 483, 507, 640
HpySE526I ACGT 1 cut(s) 915
HspAI GCGC 2 cut(s) 332, 644
Ksp22I TGATCA 1 cut(s) 694
Kzo9I GATC 2 cut(s) 694, 975
LmnI GCTCC 1 cut(s) 25
Lsp1109I GCAGC 3 cut(s) 865, 1213, 1304
LweI GCATC 6 cut(s) 315, 469, 487, 678, 1012, 1428
MaeI CTAG 4 cut(s) 374, 1130, 1247, 1260
MaeII ACGT 1 cut(s) 915
MaeIII GTNAC 4 cut(s) 156, 457, 718, 1262
MalI GATC 2 cut(s) 696, 977
MbiI CCGCTC 1 cut(s) 28
MboI GATC 2 cut(s) 694, 975
MboII GAAGA 2 cut(s) 214, 1376
MfeI CAATTG 1 cut(s) 1446
MhlI GDGCHC 4 cut(s) 751, 1057, 1243, 1281
MlsI TGGCCA 2 cut(s) 54, 114
MluCI AATT 7 cut(s) 226, 529, 835, 1116, 1324, 1333, 1446
MluNI TGGCCA 2 cut(s) 54, 114
MlyI GAGTC 2 cut(s) 42, 1102
Mox20I TGGCCA 2 cut(s) 54, 114
MroXI GAANNNNTTC 1 cut(s) 678
MscI TGGCCA 2 cut(s) 54, 114
MseI TTAA 5 cut(s) 588, 858, 954, 1043, 1200
Msp20I TGGCCA 2 cut(s) 54, 114
MspR9I CCNGG 1 cut(s) 1434
MunI CAATTG 1 cut(s) 1446
Mva1269I GAATGC 1 cut(s) 1228
MvaI CCWGG 1 cut(s) 1434
MvnI CGCG 2 cut(s) 332, 1283
MwoI GCNNNNNNNGC 3 cut(s) 12, 652, 1289
NcoI CCATGG 5 cut(s) 49, 103, 231, 388, 1319
NdeII GATC 2 cut(s) 694, 975
NmuCI GTSAC 3 cut(s) 156, 718, 1262
NspI RCATGY 2 cut(s) 15, 1050
NspV TTCGAA 1 cut(s) 264
PaeI GCATGC 1 cut(s) 15
PagI TCATGA 2 cut(s) 291, 1189
PaqCI CACCTGC 1 cut(s) 1362
PciI ACATGT 1 cut(s) 1046
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PctI GAATGC 1 cut(s) 1228
PdmI GAANNNNTTC 1 cut(s) 678
PfeI GAWTC 3 cut(s) 243, 397, 797
PkrI GCNGC 4 cut(s) 30, 880, 1228, 1294
PleI GAGTC 2 cut(s) 41, 1102
PpsI GAGTC 2 cut(s) 41, 1102
PscI ACATGT 1 cut(s) 1046
PsiI TTATAA 1 cut(s) 845
Psp124BI GAGCTC 1 cut(s) 1281
Psp1406I AACGTT 1 cut(s) 915
Psp6I CCWGG 1 cut(s) 1432
PspGI CCWGG 1 cut(s) 1432
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
SacI GAGCTC 1 cut(s) 1281
SaqAI TTAA 5 cut(s) 588, 858, 954, 1043, 1200
SatI GCNGC 4 cut(s) 29, 879, 1227, 1293
Sau3AI GATC 2 cut(s) 694, 975
SchI GAGTC 2 cut(s) 42, 1102
ScrFI CCNGG 1 cut(s) 1434
SduI GDGCHC 4 cut(s) 751, 1057, 1243, 1281
SfaNI GCATC 6 cut(s) 315, 469, 487, 678, 1012, 1428
SfuI TTCGAA 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
SphI GCATGC 1 cut(s) 15
Sse9I AATT 7 cut(s) 226, 529, 835, 1116, 1324, 1333, 1446
SsiI CCGC 8 cut(s) 23, 28, 40, 76, 100, 310, 1170, 1283
SspI AATATT 1 cut(s) 1354
SspMI CTAG 4 cut(s) 374, 1130, 1247, 1260
SstI GAGCTC 1 cut(s) 1281
StyD4I CCNGG 1 cut(s) 1432
StyI CCWWGG 6 cut(s) 49, 103, 109, 231, 388, 1319
TaaI ACNGT 1 cut(s) 724
TaiI ACGT 1 cut(s) 918
TaqI TCGA 8 cut(s) 264, 353, 428, 567, 626, 894, 987, 1314
TasI AATT 7 cut(s) 226, 529, 835, 1116, 1324, 1333, 1446
TatI WGTACW 1 cut(s) 321
TauI GCSGC 1 cut(s) 31
TfiI GAWTC 3 cut(s) 243, 397, 797
Tru1I TTAA 5 cut(s) 588, 858, 954, 1043, 1200
Tru9I TTAA 5 cut(s) 588, 858, 954, 1043, 1200
TscAI CASTG 2 cut(s) 386, 1248
TseFI GTSAC 3 cut(s) 156, 718, 1262
TseI GCWGC 3 cut(s) 878, 1226, 1292
Tsp45I GTSAC 3 cut(s) 156, 718, 1262
TspDTI ATGAA 3 cut(s) 308, 729, 1284
TspGWI ACGGA 3 cut(s) 136, 619, 809
TspRI CASTG 2 cut(s) 386, 1248
VneI GTGCAC 1 cut(s) 1239
XapI RAATTY 3 cut(s) 529, 835, 1324
XceI RCATGY 2 cut(s) 15, 1050
XcmI CCANNNNNNNNNTGG 1 cut(s) 386
XmnI GAANNNNTTC 1 cut(s) 678
XspI CTAG 4 cut(s) 374, 1130, 1247, 1260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.