Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002518

Physical Location & Seq

Genomic Coordinates Reverse (-)

34724947 .. 34728714

Gene Structure 3768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0306900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGAGCGATTCGTCGTCAGTGAACGAAACGGCGTCGTCGAAGGGGACGGACGCGTCTCGAATCGGAGAGGTGAAGCAATGGCTGGCTCAGGAATTCTCCCAAGCCGGCAAACAAGTCCCCGATTTCGAATACACCCCTCGTTCCGTGGCATATTTACGCAACCTTGCCACTCTTTCCCAGTCCCAGACTCAAGCCTCCAAGATCCTCGCCTCCGATTTCCGCCTCAAAGCCTCCGAGTACCGCTCCCAAGCTGCCAGGATTCGGGAGATCTTGGAGAGTGTGGGGTTAGCACAGGAGGGTTTGCCGTCCAATGTGGTTTCCTCTGCTCACGTCTTGGCCAATGTCGCTAATTTATTGAATATCAGAGATACTGAGCTAAGCAGTTTTCTTGTGGCCATGGGGGATATATCTTTGAGGAAGACTGGCGTGGAGGAGAAGAGGGCTAAAGCCCAAAAGGAGTCCAAAGTTCTTCTTGATTATACTCGAAAGGCTATTGCCAGGTTAACTTATTTGAAAAGAACACTCGGCCAACTAGAAGATGATGTAGGCCAATGTGAAGCGCACATTGATTATTGGAAGACCAATTTGGGGGTGATGGTGGGCAAGGAGAAGCAATACAATCTACAGACTGCCAACTATAAGACTACTCTTACCCGTGTGGGCTATACCCCAGAGATTAGCCATGGGGTATTGGTTGAATTGGCTGAGCACCGGAAGGAATTAGAGAAGAAGACAAAACCTGTTCTTGATACTTTGCGAAGCTACCAAGACTTGCCTCCGGATAAAGCTTTGGCTGCTTTAGCAATTGAGGACAAGAAAAGACAGTATGCTGCTGCTGAGAAGTATCTCGAAGACGTGTTGCATTCAGCTCTTGCCACTTCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

295

Amino Acids

32.8

Weight (kDa)

8.39

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAUS1	PF25762	23 - 260	1.9e-73	HAUS augmin-like complex subunit 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09190
fragaria_vesca	FvH4_1g08040
malus_domestica	MD02G1085000.v1.1
prunus_persica	Prupe.7G204600_v2.0.a1
pyrus_communis	pycom02g06780 pycom02g20400
rosa_chinensis	RchiOBHm_Chr1g0349371 RchiOBHm_Chr1g0365421 RchiOBHm_Chr2g0094071 RchiOBHm_Chr2g0100501 RchiOBHm_Chr2g0145241 RchiOBHm_Chr5g0027681
rosa_laevigata	RLG00000016453 RLG00000016978 RLG00000028565
rosa_multiflora	Rmu_sc0000528.1_g000021 Rmu_sc0001942.1_g000078 Rmu_sc0001989.1_g000005 Rmu_sc0001989.1_g000006 Rmu_sc0002834.1_g000001 Rmu_sc0010460.1_g000009 Rmu_sc0015757.1_g000001 Rmu_sc0023774.1_g000001 Rmu_ssc0000469.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065660 Rroxscaffold_2G00147500
rosa_rugosa	Rorug01G0191200 Rorug01G0245800 Rorug01G0404500 Rorug02G0040700 Rorug02G0042900 Rorug02G0088700 Rorug02G0306900 Rorug02G0425200 RorugPtG0000800
rosa_samantha	Rh1BG121500 Rh2BG141500 Rh2BG455200 Rh2CG090800 Rh2CG143700 Rh2DG465200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	52
AccBSI	CCGCTC	1 cut(s)	243
AccII	CGCG	1 cut(s)	53
AccIII	TCCGGA	1 cut(s)	778
AciI	CCGC	2 cut(s)	220, 241
AclWI	GGATC	1 cut(s)	196
AcoI	YGGCCR	3 cut(s)	336, 393, 526
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	864
AcyI	GRCGYC	1 cut(s)	32
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	2 cut(s)	261, 588
AflIII	ACRYGT	2 cut(s)	51, 855
AgsI	TTSAA	3 cut(s)	358, 514, 698
AjiI	CACGTC	2 cut(s)	331, 856
AjnI	CCWGG	2 cut(s)	254, 497
AjuI	GAANNNNNNNTTGG	2 cut(s)	569, 601
AluBI	AGCT	5 cut(s)	251, 376, 762, 788, 869
AluI	AGCT	5 cut(s)	251, 376, 762, 788, 869
Alw21I	GWGCWC	1 cut(s)	711
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	1 cut(s)	196
Aor13HI	TCCGGA	1 cut(s)	778
AoxI	GGCC	4 cut(s)	336, 393, 526, 547
ApeKI	GCWGC	4 cut(s)	251, 794, 830, 833
ApoI	RAATTY	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	562
AsuHPI	GGTGA	2 cut(s)	82, 604
AsuII	TTCGAA	1 cut(s)	126
BalI	TGGCCA	2 cut(s)	338, 395
BbsI	GAAGAC	4 cut(s)	425, 584, 737, 858
Bbv12I	GWGCWC	1 cut(s)	711
BbvI	GCAGC	4 cut(s)	238, 781, 817, 820
BccI	CCATC	1 cut(s)	589
BceAI	ACGGC	2 cut(s)	45, 289
BciT130I	CCWGG	2 cut(s)	256, 499
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	1 cut(s)	533
BfmI	CTRYAG	1 cut(s)	623
BglII	AGATCT	1 cut(s)	267
BisI	GCNGC	4 cut(s)	252, 795, 831, 834
BlpI	GCTNAGC	2 cut(s)	377, 705
BlsI	GCNGC	4 cut(s)	253, 796, 832, 835
Bme1390I	CCNGG	2 cut(s)	256, 499
BmgBI	CACGTC	2 cut(s)	331, 856
BmrFI	CCNGG	2 cut(s)	256, 499
BmrI	ACTGGG	1 cut(s)	172
BmuI	ACTGGG	1 cut(s)	172
BpiI	GAAGAC	4 cut(s)	425, 584, 737, 858
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
Bpu10I	CCTNAGC	1 cut(s)	87
Bpu1102I	GCTNAGC	2 cut(s)	377, 705
Bpu14I	TTCGAA	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	174
BsaHI	GRCGYC	1 cut(s)	32
BsaJI	CCNNGG	3 cut(s)	144, 396, 682
BsaWI	WCCGGW	2 cut(s)	711, 778
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 588
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	2 cut(s)	178, 427
Bse3DI	GCAATG	1 cut(s)	83
BseAI	TCCGGA	1 cut(s)	778
BseBI	CCWGG	2 cut(s)	256, 499
BseDI	CCNNGG	3 cut(s)	144, 396, 682
BseLI	CCNNNNNNNGG	2 cut(s)	261, 588
BseMI	GCAATG	1 cut(s)	83
BseMII	CTCAG	4 cut(s)	101, 363, 696, 828
BseNI	ACTGG	2 cut(s)	178, 427
BseRI	GAGGAG	1 cut(s)	446
BseXI	GCAGC	4 cut(s)	238, 781, 817, 820
Bsh1236I	CGCG	1 cut(s)	53
BshFI	GGCC	4 cut(s)	338, 395, 528, 549
BsiHKAI	GWGCWC	1 cut(s)	711
BsiSI	CCGG	3 cut(s)	105, 712, 779
BslFI	GGGAC	3 cut(s)	58, 101, 166
BslI	CCNNNNNNNGG	2 cut(s)	261, 588
BsmAI	GTCTC	1 cut(s)	60
BsmBI	CGTCTC	1 cut(s)	60
BsmFI	GGGAC	3 cut(s)	58, 101, 166
BsmI	GAATGC	1 cut(s)	862
BsnI	GGCC	4 cut(s)	338, 395, 528, 549
Bsp119I	TTCGAA	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	711
Bsp13I	TCCGGA	1 cut(s)	778
Bsp143I	GATC	2 cut(s)	201, 267
Bsp1720I	GCTNAGC	2 cut(s)	377, 705
Bsp19I	CCATGG	2 cut(s)	396, 682
BspACI	CCGC	2 cut(s)	220, 241
BspANI	GGCC	4 cut(s)	338, 395, 528, 549
BspCNI	CTCAG	4 cut(s)	100, 364, 697, 829
BspEI	TCCGGA	1 cut(s)	778
BspFNI	CGCG	1 cut(s)	53
BspPI	GGATC	1 cut(s)	196
BspT104I	TTCGAA	1 cut(s)	126
BsrBI	CCGCTC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	83
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	2 cut(s)	178, 427
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	3 cut(s)	144, 396, 682
BssMI	GATC	2 cut(s)	201, 267
BssNI	GRCGYC	1 cut(s)	32
BssT1I	CCWWGG	2 cut(s)	396, 682
Bst2UI	CCWGG	2 cut(s)	256, 499
Bst4CI	ACNGT	1 cut(s)	825
Bst6I	CTCTTC	1 cut(s)	431
BstACI	GRCGYC	1 cut(s)	32
BstBI	TTCGAA	1 cut(s)	126
BstC8I	GCNNGC	2 cut(s)	84, 106
BstDEI	CTNAG	5 cut(s)	87, 372, 377, 705, 837
BstDSI	CCRYGG	3 cut(s)	144, 396, 682
BstFNI	CGCG	1 cut(s)	53
BstHHI	GCGC	1 cut(s)	562
BstKTI	GATC	2 cut(s)	204, 270
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	2 cut(s)	201, 267
BstMWI	GCNNNNNNNGC	3 cut(s)	344, 794, 800
BstNI	CCWGG	2 cut(s)	256, 499
BstSCI	CCNGG	2 cut(s)	254, 497
BstSFI	CTRYAG	1 cut(s)	623
BstUI	CGCG	1 cut(s)	53
BstV1I	GCAGC	4 cut(s)	238, 781, 817, 820
BstV2I	GAAGAC	4 cut(s)	425, 584, 737, 858
BstX2I	RGATCY	2 cut(s)	201, 267
BstYI	RGATCY	2 cut(s)	201, 267
BsuRI	GGCC	4 cut(s)	338, 395, 528, 549
BtgI	CCRYGG	3 cut(s)	144, 396, 682
BtrI	CACGTC	2 cut(s)	331, 856
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	2 cut(s)	84, 106
CfoI	GCGC	1 cut(s)	562
Cfr10I	RCCGGY	1 cut(s)	104
CseI	GACGC	3 cut(s)	21, 42, 59
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	2 cut(s)	397, 683
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	5 cut(s)	87, 372, 377, 705, 837
DpnI	GATC	2 cut(s)	203, 269
DpnII	GATC	2 cut(s)	201, 267
DrdI	GACNNNNNNGTC	1 cut(s)	52
DseDI	GACNNNNNNGTC	1 cut(s)	52
EaeI	YGGCCR	3 cut(s)	336, 393, 526
Eam1104I	CTCTTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	431
EciI	GGCGGA	1 cut(s)	209
Eco130I	CCWWGG	2 cut(s)	396, 682
Eco57I	CTGAAG	1 cut(s)	864
EcoRI	GAATTC	1 cut(s)	92
EcoRII	CCWGG	2 cut(s)	254, 497
EcoT14I	CCWWGG	2 cut(s)	396, 682
ErhI	CCWWGG	2 cut(s)	396, 682
Esp3I	CGTCTC	1 cut(s)	60
FaeI	CATG	2 cut(s)	400, 686
FaiI	YATR	8 cut(s)	151, 398, 407, 480, 639, 666, 684, 828
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FaqI	GGGAC	3 cut(s)	58, 101, 166
FatI	CATG	2 cut(s)	396, 682
Fnu4HI	GCNGC	4 cut(s)	252, 795, 831, 834
Fsp4HI	GCNGC	4 cut(s)	252, 795, 831, 834
FspBI	CTAG	1 cut(s)	533
GlaI	GCGC	1 cut(s)	561
GluI	GCNGC	4 cut(s)	252, 795, 831, 834
HaeIII	GGCC	4 cut(s)	338, 395, 528, 549
HapII	CCGG	3 cut(s)	105, 712, 779
HgaI	GACGC	3 cut(s)	21, 42, 59
HhaI	GCGC	1 cut(s)	562
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	2 cut(s)	400, 686
Hin6I	GCGC	1 cut(s)	560
HinP1I	GCGC	1 cut(s)	560
HincII	GTYRAC	1 cut(s)	504
HindII	GTYRAC	1 cut(s)	504
HindIII	AAGCTT	1 cut(s)	786
HinfI	GANTC	5 cut(s)	8, 60, 187, 259, 458
HpaI	GTTAAC	1 cut(s)	504
HpaII	CCGG	3 cut(s)	105, 712, 779
HphI	GGTGA	2 cut(s)	82, 604
Hpy166II	GTNNAC	2 cut(s)	22, 504
Hpy188I	TCNGA	5 cut(s)	65, 214, 235, 365, 883
Hpy188III	TCNNGA	7 cut(s)	57, 89, 263, 473, 746, 779, 848
Hpy8I	GTNNAC	2 cut(s)	22, 504
Hpy99I	CGWCG	3 cut(s)	16, 37, 40
HpyAV	CCTTC	2 cut(s)	34, 709
HpyCH4III	ACNGT	1 cut(s)	825
HpyCH4IV	ACGT	2 cut(s)	330, 855
HpyCH4V	TGCA	1 cut(s)	862
HpyF10VI	GCNNNNNNNGC	3 cut(s)	344, 794, 800
HpyF3I	CTNAG	5 cut(s)	87, 372, 377, 705, 837
HpySE526I	ACGT	2 cut(s)	330, 855
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	2 cut(s)	400, 686
HspAI	GCGC	1 cut(s)	560
Kpn2I	TCCGGA	1 cut(s)	778
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
KspAI	GTTAAC	1 cut(s)	504
Kzo9I	GATC	2 cut(s)	201, 267
LmnI	GCTCC	1 cut(s)	248
Lsp1109I	GCAGC	4 cut(s)	238, 781, 817, 820
MaeI	CTAG	1 cut(s)	533
MaeII	ACGT	2 cut(s)	330, 855
MalI	GATC	2 cut(s)	203, 269
MbiI	CCGCTC	1 cut(s)	243
MboI	GATC	2 cut(s)	201, 267
MboII	GAAGA	8 cut(s)	430, 448, 461, 548, 589, 739, 742, 863
MfeI	CAATTG	1 cut(s)	804
MflI	RGATCY	2 cut(s)	201, 267
MhlI	GDGCHC	1 cut(s)	711
MlsI	TGGCCA	2 cut(s)	338, 395
MluCI	AATT	6 cut(s)	92, 349, 583, 698, 719, 804
MluI	ACGCGT	1 cut(s)	51
MluNI	TGGCCA	2 cut(s)	338, 395
MlyI	GAGTC	2 cut(s)	181, 467
Mox20I	TGGCCA	2 cut(s)	338, 395
MroI	TCCGGA	1 cut(s)	778
MroNI	GCCGGC	1 cut(s)	104
MscI	TGGCCA	2 cut(s)	338, 395
MseI	TTAA	1 cut(s)	503
Msp20I	TGGCCA	2 cut(s)	338, 395
MspI	CCGG	3 cut(s)	105, 712, 779
MspR9I	CCNGG	2 cut(s)	256, 499
MunI	CAATTG	1 cut(s)	804
Mva1269I	GAATGC	1 cut(s)	862
MvaI	CCWGG	2 cut(s)	256, 499
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	3 cut(s)	344, 794, 800
NaeI	GCCGGC	1 cut(s)	106
NcoI	CCATGG	2 cut(s)	396, 682
NdeII	GATC	2 cut(s)	201, 267
NgoMIV	GCCGGC	1 cut(s)	104
NlaIII	CATG	2 cut(s)	400, 686
NmeAIII	GCCGAG	1 cut(s)	504
NspV	TTCGAA	1 cut(s)	126
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PctI	GAATGC	1 cut(s)	862
PdiI	GCCGGC	1 cut(s)	106
PfeI	GAWTC	3 cut(s)	8, 60, 259
PkrI	GCNGC	4 cut(s)	253, 796, 832, 835
PleI	GAGTC	2 cut(s)	181, 466
PpsI	GAGTC	2 cut(s)	181, 466
Psp6I	CCWGG	2 cut(s)	254, 497
PspGI	CCWGG	2 cut(s)	254, 497
PsuI	RGATCY	2 cut(s)	201, 267
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SaqAI	TTAA	1 cut(s)	503
SatI	GCNGC	4 cut(s)	252, 795, 831, 834
Sau3AI	GATC	2 cut(s)	201, 267
SchI	GAGTC	2 cut(s)	181, 467
ScrFI	CCNGG	2 cut(s)	256, 499
SduI	GDGCHC	1 cut(s)	711
SfcI	CTRYAG	1 cut(s)	623
SfuI	TTCGAA	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
Sse9I	AATT	6 cut(s)	92, 349, 583, 698, 719, 804
SsiI	CCGC	2 cut(s)	220, 241
SspMI	CTAG	1 cut(s)	533
StyD4I	CCNGG	2 cut(s)	254, 497
StyI	CCWWGG	2 cut(s)	396, 682
TaaI	ACNGT	1 cut(s)	825
TaiI	ACGT	2 cut(s)	333, 858
TaqI	TCGA	5 cut(s)	38, 58, 126, 484, 849
TasI	AATT	6 cut(s)	92, 349, 583, 698, 719, 804
TfiI	GAWTC	3 cut(s)	8, 60, 259
Tru1I	TTAA	1 cut(s)	503
Tru9I	TTAA	1 cut(s)	503
TscAI	CASTG	1 cut(s)	24
TseI	GCWGC	4 cut(s)	251, 794, 830, 833
TspGWI	ACGGA	2 cut(s)	62, 133
TspRI	CASTG	1 cut(s)	24
XapI	RAATTY	1 cut(s)	92
XspI	CTAG	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.