Rroxscaffold_2G00147500

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
85301885 .. 85303687
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00147500.1

Sequence Viewer

Length: 1470 bp
ATGATCAACCCTTGCCGTGAGGCGGAACGGAGGGTGCTCCGGCTCCTCCACGGCCCCAAAAGCCGAACCCAACTCCGCCAAATCCATGCCCACCTCCTCCGCCACGGCCTCGACCAACTCAACCAACTAATCTCCCACTTCGTCTCCGTCTGCTACTCCCTCAACAAAATGCACTACGCCAATCTCATCTTTCAACACACCCACAACCCCAACATCCTCCTCTTCAACGCCATGATCAAGGGCTTTTCCCTCTGCCACCCCTTCGAAAAATCCCTCCACATTTTCTCCGATATGAAACGACGCGGCGTTTGGCCCGACGAGTACACCTTTGCGCCTGTGCTCAAGTCCTGCTCCAACATTTGTCATTATAGTTTGGGCCGGTGTGTGCATGGAGAGGTTTTGAGAATGGGGTTTGAGTGGTTTGGTTCGATTCGGGTTGGGATTATTGAGCTTTATGTGACTTGTGGGAGGATGGGGGATGCACAGCATGTGTTCGATGAAATGTCTCAGAGAGATGTGATTGCTTGGAATTTGATGATTCGTGGGTTTTGCAAGAGTGGTAATGTCGATACTGGTTTGTGTTTGTTTAGGCAGATGGGTGAGAGGAATGTTGTTTCTTGGAACTCGATGATTTCGTGCTTAGCGCAGTGTGGGAGGGACAGTGAAGCTTTGAGGGTTTTTAATGAGATGAGGGAGCAGAGTTTTGAACCAGACGAGGCTACTGTGGTGTCGGTTTTGCCTGCCTGCGCTCGGTTAGGGGATGTTGATGTTGGGAAATGGATACACTCTTATGCAGAGTCTAAAGGACTTCTGCAAAAAGTTGTATCTGTGGGGAACTCGCTTGTGAGTTTTTACTGTAAATGTGGAGATTTGGATGCTGCGTCTAGTGTTTTTGACCGCATGGCGCAGAAGAATGTTGTTTCCTGGAACTCTTTGATTTCGGGGTATGCTTTTAATGGGAGAGGTGAACTTGGGATCAACTTGTTCGAGGAGATGATGAACACAGATGAGAAACCAAACGATGCCACGTTTGTTGGGGCATTAACATGCTGTGCGCATGCAGGCTTGGTTGAAAAGGGAAGGGATTTGTTTGCTTCAATGACTGAAACTCACCGAATTGAGCCGAAACTAGAGCATTACGGATGCATGGTTGATGTTCTTGGCAGAAGTGGATGTCTGAAGGAGGCTCATGACTTGATCAAGAGCATGCCTATGAAACCAAATGCTGCCTTATGGGGTGCACTGCTTGGTGCTTGCTCTACTCACGGTGAAGTAAAGCTTGCGGAACTTGCGGCTAAAGAGCTTATTGATGTTGAAACGTGGAATTCTGGGAATTACGTGTTGTTATCCAATATTTACGCCGAAGAAGGCCGGTGGGATGAAGTTGAGAAAGTCAGGGACTTGATGAAGGAAAACTGCATCACAAAAGCACCCGGACAGAGTGCCATTGGAAAGGATAACCGACTGTAG

Protein Analysis

489

Amino Acids

54.89

Weight (kDa)

6.68

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 70 - 118 3.4e-08 PPR repeat family
PPR_2 PF13041 171 - 204 9.3e-07 PPR repeat family
PPR_1 PF12854 171 - 199 8.9e-06 PPR repeat
PPR PF01535 175 - 204 1.1e-06 PPR repeat
PPR_2 PF13041 202 - 251 1.4e-11 PPR repeat family
PPR_1 PF12854 202 - 231 4.7e-06 PPR repeat
PPR PF01535 205 - 233 2.5e-08 PPR repeat
PPR_long PF17177 221 - 306 8.4e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 304 - 352 4e-10 PPR repeat family
PPR PF01535 307 - 333 2.8e-06 PPR repeat
E_motif PF20431 422 - 483 3e-21 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1056
AccII CGCG 1 cut(s) 303
AciI CCGC 7 cut(s) 23, 76, 100, 303, 898, 1283, 1292
AclWI GGATC 1 cut(s) 983
AcsI RAATTY 2 cut(s) 529, 1324
AcuI CTGAAG 1 cut(s) 1199
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 2 cut(s) 22, 750
AflIII ACRYGT 1 cut(s) 1338
AgsI TTSAA 6 cut(s) 194, 226, 707, 1073, 1098, 1316
AjnI CCWGG 1 cut(s) 923
AluBI AGCT 4 cut(s) 451, 668, 1279, 1303
AluI AGCT 4 cut(s) 451, 668, 1279, 1303
Alw21I GWGCWC 3 cut(s) 39, 342, 1243
Alw26I GTCTC 2 cut(s) 148, 510
Alw44I GTGCAC 1 cut(s) 1239
AlwI GGATC 1 cut(s) 983
AoxI GGCC 5 cut(s) 52, 106, 311, 376, 1369
ApaLI GTGCAC 1 cut(s) 1239
ApeKI GCWGC 2 cut(s) 878, 1226
ApoI RAATTY 2 cut(s) 529, 1324
ArsI GACNNNNNNTTYG 2 cut(s) 291, 323
AspLEI GCGC 5 cut(s) 334, 646, 749, 907, 1057
AspS9I GGNCC 3 cut(s) 53, 312, 376
AsuC2I CCSGG 1 cut(s) 1434
AsuHPI GGTGA 4 cut(s) 611, 977, 1103, 1280
AsuII TTCGAA 1 cut(s) 264
BaeGI GKGCMC 1 cut(s) 1243
Bbv12I GWGCWC 3 cut(s) 39, 342, 1243
BbvI GCAGC 2 cut(s) 865, 1213
BccI CCATC 2 cut(s) 466, 589
BceAI ACGGC 2 cut(s) 67, 121
BciT130I CCWGG 1 cut(s) 925
BciVI GTATCC 1 cut(s) 774
BclI TGATCA 3 cut(s) 3, 234, 1197
BcnI CCSGG 1 cut(s) 1434
BcoDI GTCTC 2 cut(s) 148, 510
BfaI CTAG 2 cut(s) 885, 1130
BfmI CTRYAG 1 cut(s) 1466
BfuI GTATCC 1 cut(s) 774
BisI GCNGC 4 cut(s) 304, 879, 1227, 1293
BlpI GCTNAGC 1 cut(s) 640
BlsI GCNGC 4 cut(s) 305, 880, 1228, 1294
Bme1390I CCNGG 2 cut(s) 925, 1434
BmgT120I GGNCC 3 cut(s) 53, 312, 376
BmiI GGNNCC 2 cut(s) 44, 55
BmrFI CCNGG 2 cut(s) 925, 1434
BmsI GCATC 5 cut(s) 469, 865, 1012, 1133, 1428
Bpu1102I GCTNAGC 1 cut(s) 640
Bpu14I TTCGAA 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 1 cut(s) 1434
BsaAI YACGTR 1 cut(s) 1339
BsaJI CCNNGG 2 cut(s) 49, 103
BsaXI ACNNNNNCTCC 6 cut(s) 128, 158, 269, 299, 646, 676
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 750
Bse118I RCCGGY 2 cut(s) 378, 1371
Bse1I ACTGG 1 cut(s) 577
BseBI CCWGG 1 cut(s) 925
BseDI CCNNGG 2 cut(s) 49, 103
BseGI GGATG 8 cut(s) 213, 477, 484, 766, 880, 1148, 1178, 1384
BseLI CCNNNNNNNGG 2 cut(s) 22, 750
BseMII CTCAG 1 cut(s) 521
BseNI ACTGG 1 cut(s) 577
BseRI GAGGAG 4 cut(s) 35, 86, 209, 1004
BseSI GKGCMC 1 cut(s) 1243
BseXI GCAGC 2 cut(s) 865, 1213
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 5 cut(s) 54, 108, 313, 378, 1371
BsiHKAI GWGCWC 3 cut(s) 39, 342, 1243
BsiSI CCGG 4 cut(s) 40, 379, 1372, 1434
BslFI GGGAC 2 cut(s) 671, 1412
BslI CCNNNNNNNGG 2 cut(s) 22, 750
BsmAI GTCTC 2 cut(s) 148, 510
BsmBI CGTCTC 1 cut(s) 148
BsmFI GGGAC 2 cut(s) 671, 1412
BsnI GGCC 5 cut(s) 54, 108, 313, 378, 1371
Bsp119I TTCGAA 1 cut(s) 264
Bsp1286I GDGCHC 3 cut(s) 39, 342, 1243
Bsp143I GATC 4 cut(s) 3, 234, 975, 1197
Bsp1720I GCTNAGC 1 cut(s) 640
BspACI CCGC 7 cut(s) 23, 76, 100, 303, 898, 1283, 1292
BspANI GGCC 5 cut(s) 54, 108, 313, 378, 1371
BspCNI CTCAG 1 cut(s) 520
BspFNI CGCG 1 cut(s) 303
BspHI TCATGA 1 cut(s) 1189
BspLI GGNNCC 2 cut(s) 44, 55
BspPI GGATC 1 cut(s) 983
BspT104I TTCGAA 1 cut(s) 264
BsrFI RCCGGY 2 cut(s) 378, 1371
BsrI ACTGG 1 cut(s) 577
BssAI RCCGGY 2 cut(s) 378, 1371
BssECI CCNNGG 2 cut(s) 49, 103
BssMI GATC 4 cut(s) 3, 234, 975, 1197
Bst2UI CCWGG 1 cut(s) 925
Bst4CI ACNGT 5 cut(s) 662, 724, 857, 1268, 1467
Bst6I CTCTTC 1 cut(s) 227
BstBAI YACGTR 1 cut(s) 1339
BstBI TTCGAA 1 cut(s) 264
BstC8I GCNNGC 7 cut(s) 741, 745, 1059, 1063, 1208, 1255, 1281
BstDEI CTNAG 2 cut(s) 507, 640
BstDSI CCRYGG 2 cut(s) 49, 103
BstF5I GGATG 8 cut(s) 213, 477, 484, 766, 880, 1148, 1178, 1384
BstFNI CGCG 1 cut(s) 303
BstHHI GCGC 5 cut(s) 334, 646, 749, 907, 1057
BstKTI GATC 4 cut(s) 6, 237, 978, 1200
BstMAI GTCTC 2 cut(s) 148, 510
BstMBI GATC 4 cut(s) 3, 234, 975, 1197
BstMWI GCNNNNNNNGC 2 cut(s) 60, 1289
BstNI CCWGG 1 cut(s) 925
BstNSI RCATGY 4 cut(s) 491, 1050, 1061, 1210
BstSCI CCNGG 2 cut(s) 923, 1432
BstSFI CTRYAG 1 cut(s) 1466
BstSLI GKGCMC 1 cut(s) 1243
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 2 cut(s) 865, 1213
BsuI GTATCC 1 cut(s) 774
BsuRI GGCC 5 cut(s) 54, 108, 313, 378, 1371
BtgI CCRYGG 2 cut(s) 49, 103
BtsCI GGATG 8 cut(s) 213, 477, 484, 766, 880, 1148, 1178, 1384
BtsI GCAGTG 2 cut(s) 653, 1241
BtsIMutI CAGTG 3 cut(s) 653, 667, 1241
Cac8I GCNNGC 7 cut(s) 741, 745, 1059, 1063, 1208, 1255, 1281
CciI TCATGA 1 cut(s) 1189
CfoI GCGC 5 cut(s) 334, 646, 749, 907, 1057
Cfr10I RCCGGY 2 cut(s) 378, 1371
Cfr13I GGNCC 3 cut(s) 53, 312, 376
CseI GACGC 2 cut(s) 309, 870
Csp6I GTAC 1 cut(s) 322
CspCI CAANNNNNGTGG 2 cut(s) 1015, 1050
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 2 cut(s) 507, 640
DpnI GATC 4 cut(s) 5, 236, 977, 1199
DpnII GATC 4 cut(s) 3, 234, 975, 1197
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
EciI GGCGGA 3 cut(s) 38, 65, 89
Eco57I CTGAAG 1 cut(s) 1199
EcoRI GAATTC 1 cut(s) 1324
EcoRII CCWGG 1 cut(s) 923
EcoT22I ATGCAT 1 cut(s) 1148
Esp3I CGTCTC 1 cut(s) 148
FalI AAGNNNNNCTT 2 cut(s) 1263, 1295
FaqI GGGAC 2 cut(s) 671, 1412
FbaI TGATCA 3 cut(s) 3, 234, 1197
Fnu4HI GCNGC 4 cut(s) 304, 879, 1227, 1293
FokI GGATG 8 cut(s) 200, 484, 491, 773, 887, 1155, 1185, 1391
Fsp4HI GCNGC 4 cut(s) 304, 879, 1227, 1293
FspAI RTGCGCAY 1 cut(s) 1056
FspBI CTAG 2 cut(s) 885, 1130
FspI TGCGCA 1 cut(s) 1056
GlaI GCGC 5 cut(s) 333, 645, 748, 906, 1056
GluI GCNGC 4 cut(s) 304, 879, 1227, 1293
HaeIII GGCC 5 cut(s) 54, 108, 313, 378, 1371
HapII CCGG 4 cut(s) 40, 379, 1372, 1434
HgaI GACGC 2 cut(s) 309, 870
HhaI GCGC 5 cut(s) 334, 646, 749, 907, 1057
Hin6I GCGC 5 cut(s) 332, 644, 747, 905, 1055
HinP1I GCGC 5 cut(s) 332, 644, 747, 905, 1055
HindIII AAGCTT 2 cut(s) 666, 1277
HinfI GANTC 3 cut(s) 430, 538, 797
HpaII CCGG 4 cut(s) 40, 379, 1372, 1434
HphI GGTGA 4 cut(s) 611, 977, 1103, 1280
Hpy166II GTNNAC 3 cut(s) 324, 968, 1241
Hpy188I TCNGA 3 cut(s) 289, 510, 1179
Hpy188III TCNNGA 2 cut(s) 1190, 1201
Hpy8I GTNNAC 3 cut(s) 324, 968, 1241
Hpy99I CGWCG 2 cut(s) 303, 320
HpyAV CCTTC 5 cut(s) 271, 1074, 1174, 1361, 1402
HpyCH4III ACNGT 5 cut(s) 662, 724, 857, 1268, 1467
HpyCH4IV ACGT 3 cut(s) 1028, 1319, 1338
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 1289
HpyF3I CTNAG 2 cut(s) 507, 640
HpySE526I ACGT 3 cut(s) 1028, 1319, 1338
HspAI GCGC 5 cut(s) 332, 644, 747, 905, 1055
Ksp22I TGATCA 3 cut(s) 3, 234, 1197
Kzo9I GATC 4 cut(s) 3, 234, 975, 1197
LmnI GCTCC 4 cut(s) 42, 48, 356, 694
Lsp1109I GCAGC 2 cut(s) 865, 1213
LweI GCATC 5 cut(s) 469, 865, 1012, 1133, 1428
MaeI CTAG 2 cut(s) 885, 1130
MaeII ACGT 3 cut(s) 1028, 1319, 1338
MaeIII GTNAC 1 cut(s) 457
MalI GATC 4 cut(s) 5, 236, 977, 1199
MboI GATC 4 cut(s) 3, 234, 975, 1197
MboII GAAGA 3 cut(s) 214, 922, 1376
MhlI GDGCHC 3 cut(s) 39, 342, 1243
MluCI AATT 4 cut(s) 529, 1116, 1324, 1333
MlyI GAGTC 1 cut(s) 806
MmeI TCCRAC 1 cut(s) 378
Mph1103I ATGCAT 1 cut(s) 1148
MseI TTAA 3 cut(s) 681, 954, 1043
MslI CAYNNNNRTG 3 cut(s) 789, 1045, 1211
MspI CCGG 4 cut(s) 40, 379, 1372, 1434
MspR9I CCNGG 2 cut(s) 925, 1434
MvaI CCWGG 1 cut(s) 925
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 2 cut(s) 60, 1289
NciI CCSGG 1 cut(s) 1434
NdeII GATC 4 cut(s) 3, 234, 975, 1197
NlaIV GGNNCC 2 cut(s) 44, 55
NmuCI GTSAC 1 cut(s) 457
NsbI TGCGCA 1 cut(s) 1056
NsiI ATGCAT 1 cut(s) 1148
NspI RCATGY 4 cut(s) 491, 1050, 1061, 1210
NspV TTCGAA 1 cut(s) 264
PaeI GCATGC 2 cut(s) 1061, 1210
PagI TCATGA 1 cut(s) 1189
PcsI WCGNNNNNNNCGW 1 cut(s) 632
PfeI GAWTC 2 cut(s) 430, 538
PfoI TCCNGGA 1 cut(s) 923
PkrI GCNGC 4 cut(s) 305, 880, 1228, 1294
PleI GAGTC 1 cut(s) 805
PpsI GAGTC 1 cut(s) 805
Ppu21I YACGTR 1 cut(s) 1339
Psp6I CCWGG 1 cut(s) 923
PspGI CCWGG 1 cut(s) 923
PspN4I GGNNCC 2 cut(s) 44, 55
PspPI GGNCC 3 cut(s) 53, 312, 376
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
RseI CAYNNNNRTG 3 cut(s) 789, 1045, 1211
SaqAI TTAA 3 cut(s) 681, 954, 1043
SatI GCNGC 4 cut(s) 304, 879, 1227, 1293
Sau3AI GATC 4 cut(s) 3, 234, 975, 1197
Sau96I GGNCC 3 cut(s) 53, 312, 376
SchI GAGTC 1 cut(s) 806
ScrFI CCNGG 2 cut(s) 925, 1434
SduI GDGCHC 3 cut(s) 39, 342, 1243
SfaNI GCATC 5 cut(s) 469, 865, 1012, 1133, 1428
SfcI CTRYAG 1 cut(s) 1466
SfuI TTCGAA 1 cut(s) 264
SmiMI CAYNNNNRTG 3 cut(s) 789, 1045, 1211
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
SphI GCATGC 2 cut(s) 1061, 1210
Sse9I AATT 4 cut(s) 529, 1116, 1324, 1333
SsiI CCGC 7 cut(s) 23, 76, 100, 303, 898, 1283, 1292
SspI AATATT 1 cut(s) 1354
SspMI CTAG 2 cut(s) 885, 1130
StyD4I CCNGG 2 cut(s) 923, 1432
TaaI ACNGT 5 cut(s) 662, 724, 857, 1268, 1467
TaiI ACGT 3 cut(s) 1031, 1322, 1341
TaqI TCGA 7 cut(s) 111, 264, 428, 495, 567, 626, 987
TasI AATT 4 cut(s) 529, 1116, 1324, 1333
TatI WGTACW 1 cut(s) 321
TauI GCSGC 2 cut(s) 306, 1295
TfiI GAWTC 2 cut(s) 430, 538
Tru1I TTAA 3 cut(s) 681, 954, 1043
Tru9I TTAA 3 cut(s) 681, 954, 1043
TscAI CASTG 3 cut(s) 653, 667, 1248
TseFI GTSAC 1 cut(s) 457
TseI GCWGC 2 cut(s) 878, 1226
Tsp45I GTSAC 1 cut(s) 457
TspDTI ATGAA 6 cut(s) 308, 513, 1013, 1229, 1395, 1421
TspGWI ACGGA 3 cut(s) 43, 136, 1155
TspRI CASTG 3 cut(s) 653, 667, 1248
VneI GTGCAC 1 cut(s) 1239
XapI RAATTY 2 cut(s) 529, 1324
XceI RCATGY 4 cut(s) 491, 1050, 1061, 1210
XspI CTAG 2 cut(s) 885, 1130
Zsp2I ATGCAT 1 cut(s) 1148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.