Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000469.1

Orthogroup ID

OG0002518

Physical Location & Seq

Genomic Coordinates Forward (+)

25044 .. 25340

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000469.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atgcctatgaaaccaaatgctgccttatggggtgcactgcttggcgcttgctctactcacggtgaagtaaagcttgcggaacttgcagctaaagagcttattgatgttgaaccgtggaattctgggaattacgtgttgttatccaatatttacgcagaagaaggccggtgggatgaagttaagaaagtcagggacttgatgaaggaaaactgcatcacaaaagcacccggacagagtgccattggaaaggatgtttatgatgaggaaaagcagagctatcgacttaagcaagcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

98

Amino Acids

10.92

Weight (kDa)

5.4

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09190
fragaria_vesca	FvH4_1g08040
malus_domestica	MD02G1085000.v1.1
prunus_persica	Prupe.7G204600_v2.0.a1
pyrus_communis	pycom02g06780 pycom02g20400
rosa_chinensis	RchiOBHm_Chr1g0349371 RchiOBHm_Chr1g0365421 RchiOBHm_Chr2g0094071 RchiOBHm_Chr2g0100501 RchiOBHm_Chr2g0145241 RchiOBHm_Chr5g0027681
rosa_laevigata	RLG00000016453 RLG00000016978 RLG00000028565
rosa_multiflora	Rmu_sc0000528.1_g000021 Rmu_sc0001942.1_g000078 Rmu_sc0001989.1_g000005 Rmu_sc0001989.1_g000006 Rmu_sc0002834.1_g000001 Rmu_sc0010460.1_g000009 Rmu_sc0015757.1_g000001 Rmu_sc0023774.1_g000001 Rmu_ssc0000469.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065660 Rroxscaffold_2G00147500
rosa_rugosa	Rorug01G0191200 Rorug01G0245800 Rorug01G0404500 Rorug02G0040700 Rorug02G0042900 Rorug02G0088700 Rorug02G0306900 Rorug02G0425200 RorugPtG0000800
rosa_samantha	Rh1BG121500 Rh2BG141500 Rh2BG455200 Rh2CG090800 Rh2CG143700 Rh2DG465200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	77
AcsI	RAATTY	1 cut(s)	118
AflII	CTTAAG	1 cut(s)	284
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	110
AluBI	AGCT	4 cut(s)	73, 89, 97, 276
AluI	AGCT	4 cut(s)	73, 89, 97, 276
Alw21I	GWGCWC	1 cut(s)	37
Alw44I	GTGCAC	1 cut(s)	33
AoxI	GGCC	1 cut(s)	163
ApaLI	GTGCAC	1 cut(s)	33
ApeKI	GCWGC	2 cut(s)	20, 86
ApoI	RAATTY	1 cut(s)	118
AspLEI	GCGC	1 cut(s)	47
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	74
BaeGI	GKGCMC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	7, 98
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BcnI	CCSGG	1 cut(s)	228
BfoI	RGCGCY	1 cut(s)	48
BfrI	CTTAAG	1 cut(s)	284
BisI	GCNGC	2 cut(s)	21, 87
BlsI	GCNGC	2 cut(s)	22, 88
Bme1390I	CCNGG	1 cut(s)	228
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	133
BsaJI	CCNNGG	1 cut(s)	113
Bse118I	RCCGGY	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	2 cut(s)	178, 256
BseSI	GKGCMC	1 cut(s)	37
BseXI	GCAGC	2 cut(s)	7, 98
BshFI	GGCC	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	166, 228
BslFI	GGGAC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	37
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	1 cut(s)	165
BspTI	CTTAAG	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	165
BssAI	RCCGGY	1 cut(s)	165
BssECI	CCNNGG	1 cut(s)	113
Bst4CI	ACNGT	2 cut(s)	62, 114
BstAFI	CTTAAG	1 cut(s)	284
BstBAI	YACGTR	1 cut(s)	133
BstC8I	GCNNGC	3 cut(s)	49, 75, 291
BstDSI	CCRYGG	1 cut(s)	113
BstF5I	GGATG	2 cut(s)	178, 256
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	226
BstSLI	GKGCMC	1 cut(s)	37
BstV1I	GCAGC	2 cut(s)	7, 98
BsuRI	GGCC	1 cut(s)	165
BtgI	CCRYGG	1 cut(s)	113
BtsCI	GGATG	2 cut(s)	178, 256
BtsI	GCAGTG	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	35
Cac8I	GCNNGC	3 cut(s)	49, 75, 291
CfoI	GCGC	1 cut(s)	47
Cfr10I	RCCGGY	1 cut(s)	165
CviJI	RGCY	6 cut(s)	73, 89, 97, 165, 276, 293
CviKI_1	RGCY	6 cut(s)	73, 89, 97, 165, 276, 293
EcoRI	GAATTC	1 cut(s)	118
FaiI	YATR	3 cut(s)	8, 28, 258
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
FaqI	GGGAC	1 cut(s)	206
Fnu4HI	GCNGC	2 cut(s)	21, 87
FokI	GGATG	2 cut(s)	185, 263
Fsp4HI	GCNGC	2 cut(s)	21, 87
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	2 cut(s)	21, 87
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	2 cut(s)	166, 228
HhaI	GCGC	1 cut(s)	47
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HindIII	AAGCTT	1 cut(s)	71
HpaII	CCGG	2 cut(s)	166, 228
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	35
Hpy8I	GTNNAC	1 cut(s)	35
HpyAV	CCTTC	2 cut(s)	155, 196
HpyCH4III	ACNGT	2 cut(s)	62, 114
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	3 cut(s)	35, 86, 213
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpySE526I	ACGT	1 cut(s)	132
HspAI	GCGC	1 cut(s)	45
LpnPI	CCDG	4 cut(s)	108, 175, 179, 241
Lsp1109I	GCAGC	2 cut(s)	7, 98
LweI	GCATC	1 cut(s)	222
MaeII	ACGT	1 cut(s)	132
MboII	GAAGA	1 cut(s)	170
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	2 cut(s)	118, 127
MnlI	CCTC	1 cut(s)	256
MseI	TTAA	2 cut(s)	180, 285
MspCI	CTTAAG	1 cut(s)	284
MspI	CCGG	2 cut(s)	166, 228
MspR9I	CCNGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	1 cut(s)	83
NciI	CCSGG	1 cut(s)	228
PkrI	GCNGC	2 cut(s)	22, 88
Ppu21I	YACGTR	1 cut(s)	133
SaqAI	TTAA	2 cut(s)	180, 285
SatI	GCNGC	2 cut(s)	21, 87
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	5 cut(s)	75, 91, 99, 135, 278
SfaNI	GCATC	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	2 cut(s)	118, 127
SsiI	CCGC	1 cut(s)	77
SspI	AATATT	1 cut(s)	148
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	2 cut(s)	62, 114
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	1 cut(s)	280
TasI	AATT	2 cut(s)	118, 127
Tru1I	TTAA	2 cut(s)	180, 285
Tru9I	TTAA	2 cut(s)	180, 285
TscAI	CASTG	1 cut(s)	42
TseI	GCWGC	2 cut(s)	20, 86
TspDTI	ATGAA	3 cut(s)	23, 189, 215
TspRI	CASTG	1 cut(s)	42
Vha464I	CTTAAG	1 cut(s)	284
VneI	GTGCAC	1 cut(s)	33
XapI	RAATTY	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.