Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002518

Physical Location & Seq

Genomic Coordinates Reverse (-)

56308349 .. 56309249

Gene Structure 901 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59006

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAACTACGCCAATCTCATCTTTCAACACACCCACAACCCCAACATCCTCCTCTTCAACGCCATGATCAAGGGCTTCTCGCTCTGCCACCCCTTCGAAAAATCGGTCTCCATTTTCTCCCATATGAAACGCCGCGGCGTTTGGCCCAACGAGTACACTTTTGCGCCTTTACTGAAGTCCTGCTCTGACATATCTTATTATAGGGTAGGCCAGTGTGTGCATGGAGAGGTTTTGAGAATGGGGTTTAAGTGGTTTGGTTCAGTTCGGGTTGGGATCATTGAGTTGTATGTAACTTGTGGAGGGTGGGTGATGCACAGAAGGTGTTCGATGAAATGTCTAAAAGAGATTGGCAATGTCGATACTGGGTTGTGCTTGTTTTGGAAGATGGGTGAGAGGAATGTTGTTTTGTGGAACTCGATGATTTCGTGCTTAGCGCAGTGTGGGAGGGACAGTGAAGCTTTGGGGTTTTTTAATGAGACATGGGAGCAGGGTTTTGAACCGGATGAGGCTATTGTGGTGTCGGTTTTGCCTACGTGTGTTCGGTTAGGGGATGTTGATGATGGGAAATGGATACACTCTTATGCAGATTCTAAAGGGCTTCTGCAAGAAGTTGTGTCTGTGGGGAACTCGCTTGTGCGTATTTACTGTAAACGTGGAGATTTGGATGTTGCGTCTAGTGTTTTTGAACAAATGGCCCGTAAGGATGTTGTTTCCTGGAACTCTTTGATTTCGGGGTATGCGTTTAATGGGAGAGGTGTACTTGGGATCAACTTGTTCGAGGAGATGTGCACATTATGCACCATGGAACAATATTTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

273

Amino Acids

31.0

Weight (kDa)

6.65

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	14 - 62	1.5e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09190
fragaria_vesca	FvH4_1g08040
malus_domestica	MD02G1085000.v1.1
prunus_persica	Prupe.7G204600_v2.0.a1
pyrus_communis	pycom02g06780 pycom02g20400
rosa_chinensis	RchiOBHm_Chr1g0349371 RchiOBHm_Chr1g0365421 RchiOBHm_Chr2g0094071 RchiOBHm_Chr2g0100501 RchiOBHm_Chr2g0145241 RchiOBHm_Chr5g0027681
rosa_laevigata	RLG00000016453 RLG00000016978 RLG00000028565
rosa_multiflora	Rmu_sc0000528.1_g000021 Rmu_sc0001942.1_g000078 Rmu_sc0001989.1_g000005 Rmu_sc0001989.1_g000006 Rmu_sc0002834.1_g000001 Rmu_sc0010460.1_g000009 Rmu_sc0015757.1_g000001 Rmu_sc0023774.1_g000001 Rmu_ssc0000469.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065660 Rroxscaffold_2G00147500
rosa_rugosa	Rorug01G0191200 Rorug01G0245800 Rorug01G0404500 Rorug02G0040700 Rorug02G0042900 Rorug02G0088700 Rorug02G0306900 Rorug02G0425200 RorugPtG0000800
rosa_samantha	Rh1BG121500 Rh2BG141500 Rh2BG455200 Rh2CG090800 Rh2CG143700 Rh2DG465200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	135
AciI	CCGC	2 cut(s)	133, 135
AclWI	GGATC	2 cut(s)	281, 773
AcuI	CTGAAG	1 cut(s)	194
AfaI	GTAC	2 cut(s)	155, 759
AflIII	ACRYGT	1 cut(s)	533
AgsI	TTSAA	4 cut(s)	26, 58, 497, 686
AjnI	CCWGG	1 cut(s)	713
AluBI	AGCT	1 cut(s)	458
AluI	AGCT	1 cut(s)	458
Alw21I	GWGCWC	1 cut(s)	791
Alw26I	GTCTC	2 cut(s)	112, 470
Alw44I	GTGCAC	1 cut(s)	787
AlwI	GGATC	2 cut(s)	281, 773
AoxI	GGCC	3 cut(s)	143, 208, 693
ApaLI	GTGCAC	1 cut(s)	787
ArsI	GACNNNNNNTTYG	2 cut(s)	90, 122
Asp700I	GAANNNNTTC	1 cut(s)	322
AspLEI	GCGC	2 cut(s)	166, 436
AspS9I	GGNCC	2 cut(s)	144, 694
AsuHPI	GGTGA	2 cut(s)	319, 401
AsuII	TTCGAA	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	791
Bbv12I	GWGCWC	1 cut(s)	791
BccI	CCATC	2 cut(s)	379, 554
BciT130I	CCWGG	1 cut(s)	715
BciVI	GTATCC	1 cut(s)	564
BclI	TGATCA	1 cut(s)	66
BcoDI	GTCTC	2 cut(s)	112, 470
BfaI	CTAG	1 cut(s)	675
BfuI	GTATCC	1 cut(s)	564
BisI	GCNGC	2 cut(s)	133, 136
BlpI	GCTNAGC	1 cut(s)	430
BlsI	GCNGC	2 cut(s)	134, 137
Bme1390I	CCNGG	1 cut(s)	715
BmgT120I	GGNCC	2 cut(s)	144, 694
BmrFI	CCNGG	1 cut(s)	715
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	1 cut(s)	300
BmuI	ACTGGG	1 cut(s)	372
Bpu1102I	GCTNAGC	1 cut(s)	430
Bpu14I	TTCGAA	1 cut(s)	96
BsaAI	YACGTR	1 cut(s)	534
BsaI	GGTCTC	1 cut(s)	112
BsaJI	CCNNGG	2 cut(s)	133, 801
BsaWI	WCCGGW	1 cut(s)	499
BsaXI	ACNNNNNCTCC	4 cut(s)	291, 321, 436, 466
Bse1I	ACTGG	2 cut(s)	211, 367
Bse3DI	GCAATG	1 cut(s)	358
BseBI	CCWGG	1 cut(s)	715
BseDI	CCNNGG	2 cut(s)	133, 801
BseGI	GGATG	5 cut(s)	45, 508, 556, 670, 709
BseMI	GCAATG	1 cut(s)	358
BseNI	ACTGG	2 cut(s)	211, 367
BseRI	GAGGAG	2 cut(s)	41, 794
BseSI	GKGCMC	1 cut(s)	791
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	3 cut(s)	145, 210, 695
BsiHKAI	GWGCWC	1 cut(s)	791
BsiSI	CCGG	1 cut(s)	500
BslFI	GGGAC	1 cut(s)	461
BsmAI	GTCTC	2 cut(s)	112, 470
BsmFI	GGGAC	1 cut(s)	461
BsnI	GGCC	3 cut(s)	145, 210, 695
Bso31I	GGTCTC	1 cut(s)	112
Bsp119I	TTCGAA	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	791
Bsp143I	GATC	3 cut(s)	66, 273, 765
Bsp1720I	GCTNAGC	1 cut(s)	430
Bsp19I	CCATGG	1 cut(s)	801
BspACI	CCGC	2 cut(s)	133, 135
BspANI	GGCC	3 cut(s)	145, 210, 695
BspFNI	CGCG	1 cut(s)	135
BspPI	GGATC	2 cut(s)	281, 773
BspT104I	TTCGAA	1 cut(s)	96
BspTNI	GGTCTC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	358
BsrI	ACTGG	2 cut(s)	211, 367
BssECI	CCNNGG	2 cut(s)	133, 801
BssMI	GATC	3 cut(s)	66, 273, 765
BssT1I	CCWWGG	1 cut(s)	801
Bst2UI	CCWGG	1 cut(s)	715
Bst4CI	ACNGT	2 cut(s)	452, 647
Bst6I	CTCTTC	1 cut(s)	59
BstAPI	GCANNNNNTGC	1 cut(s)	795
BstBAI	YACGTR	1 cut(s)	534
BstBI	TTCGAA	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	430
BstDSI	CCRYGG	2 cut(s)	133, 801
BstF5I	GGATG	5 cut(s)	45, 508, 556, 670, 709
BstFNI	CGCG	1 cut(s)	135
BstHHI	GCGC	2 cut(s)	166, 436
BstKTI	GATC	3 cut(s)	69, 276, 768
BstMAI	GTCTC	2 cut(s)	112, 470
BstMBI	GATC	3 cut(s)	66, 273, 765
BstMWI	GCNNNNNNNGC	1 cut(s)	795
BstNI	CCWGG	1 cut(s)	715
BstSCI	CCNGG	1 cut(s)	713
BstSLI	GKGCMC	1 cut(s)	791
BstUI	CGCG	1 cut(s)	135
BsuI	GTATCC	1 cut(s)	564
BsuRI	GGCC	3 cut(s)	145, 210, 695
BtgI	CCRYGG	2 cut(s)	133, 801
BtsCI	GGATG	5 cut(s)	45, 508, 556, 670, 709
BtsI	GCAGTG	1 cut(s)	443
BtsIMutI	CAGTG	3 cut(s)	218, 443, 457
CfoI	GCGC	2 cut(s)	166, 436
Cfr13I	GGNCC	2 cut(s)	144, 694
Cfr42I	CCGCGG	1 cut(s)	136
CseI	GACGC	1 cut(s)	660
Csp6I	GTAC	2 cut(s)	154, 758
CviAII	CATG	4 cut(s)	64, 221, 480, 802
CviJI	RGCY	7 cut(s)	75, 145, 210, 458, 509, 598, 695
CviKI_1	RGCY	7 cut(s)	75, 145, 210, 458, 509, 598, 695
CviQI	GTAC	2 cut(s)	154, 758
DdeI	CTNAG	1 cut(s)	430
DpnI	GATC	3 cut(s)	68, 275, 767
DpnII	GATC	3 cut(s)	66, 273, 765
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Eco130I	CCWWGG	1 cut(s)	801
Eco31I	GGTCTC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	713
EcoT14I	CCWWGG	1 cut(s)	801
ErhI	CCWWGG	1 cut(s)	801
FaeI	CATG	4 cut(s)	67, 224, 483, 805
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	4 cut(s)	63, 220, 479, 801
FauNDI	CATATG	1 cut(s)	123
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	133, 136
FokI	GGATG	5 cut(s)	32, 515, 563, 677, 716
Fsp4HI	GCNGC	2 cut(s)	133, 136
FspBI	CTAG	1 cut(s)	675
GlaI	GCGC	2 cut(s)	165, 435
GluI	GCNGC	2 cut(s)	133, 136
HaeIII	GGCC	3 cut(s)	145, 210, 695
HapII	CCGG	1 cut(s)	500
HgaI	GACGC	1 cut(s)	660
HhaI	GCGC	2 cut(s)	166, 436
Hin1II	CATG	4 cut(s)	67, 224, 483, 805
Hin6I	GCGC	2 cut(s)	164, 434
HinP1I	GCGC	2 cut(s)	164, 434
HindIII	AAGCTT	1 cut(s)	456
HinfI	GANTC	1 cut(s)	587
HpaII	CCGG	1 cut(s)	500
HphI	GGTGA	2 cut(s)	319, 401
Hpy166II	GTNNAC	4 cut(s)	156, 650, 758, 789
Hpy188I	TCNGA	1 cut(s)	187
Hpy8I	GTNNAC	4 cut(s)	156, 650, 758, 789
HpyAV	CCTTC	2 cut(s)	103, 312
HpyCH4III	ACNGT	2 cut(s)	452, 647
HpyCH4IV	ACGT	2 cut(s)	533, 652
HpyCH4V	TGCA	6 cut(s)	220, 313, 584, 604, 789, 798
HpyF10VI	GCNNNNNNNGC	1 cut(s)	795
HpyF3I	CTNAG	1 cut(s)	430
HpySE526I	ACGT	2 cut(s)	533, 652
Hsp92II	CATG	4 cut(s)	67, 224, 483, 805
HspAI	GCGC	2 cut(s)	164, 434
Ksp22I	TGATCA	1 cut(s)	66
KspI	CCGCGG	1 cut(s)	136
Kzo9I	GATC	3 cut(s)	66, 273, 765
LmnI	GCTCC	1 cut(s)	484
LpnPI	CCDG	7 cut(s)	193, 224, 348, 473, 513, 700, 727
LweI	GCATC	1 cut(s)	300
MaeI	CTAG	1 cut(s)	675
MaeII	ACGT	2 cut(s)	533, 652
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	3 cut(s)	68, 275, 767
MboI	GATC	3 cut(s)	66, 273, 765
MboII	GAAGA	2 cut(s)	46, 394
MhlI	GDGCHC	1 cut(s)	791
MnlI	CCTC	9 cut(s)	59, 62, 220, 293, 387, 438, 499, 746, 772
MroXI	GAANNNNTTC	1 cut(s)	322
MseI	TTAA	3 cut(s)	246, 471, 744
MslI	CAYNNNNRTG	1 cut(s)	579
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	1 cut(s)	500
MspR9I	CCNGG	1 cut(s)	715
MvaI	CCWGG	1 cut(s)	715
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	795
NcoI	CCATGG	1 cut(s)	801
NdeI	CATATG	1 cut(s)	123
NdeII	GATC	3 cut(s)	66, 273, 765
NlaIII	CATG	4 cut(s)	67, 224, 483, 805
NspV	TTCGAA	1 cut(s)	96
PcsI	WCGNNNNNNNCGW	2 cut(s)	422, 737
PdmI	GAANNNNTTC	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	587
PfoI	TCCNGGA	1 cut(s)	713
PkrI	GCNGC	2 cut(s)	134, 137
Ppu21I	YACGTR	1 cut(s)	534
Psp6I	CCWGG	1 cut(s)	713
PspGI	CCWGG	1 cut(s)	713
PspPI	GGNCC	2 cut(s)	144, 694
RsaI	GTAC	2 cut(s)	155, 759
RsaNI	GTAC	2 cut(s)	154, 758
RseI	CAYNNNNRTG	1 cut(s)	579
SacII	CCGCGG	1 cut(s)	136
SaqAI	TTAA	3 cut(s)	246, 471, 744
SatI	GCNGC	2 cut(s)	133, 136
Sau3AI	GATC	3 cut(s)	66, 273, 765
Sau96I	GGNCC	2 cut(s)	144, 694
ScrFI	CCNGG	1 cut(s)	715
SduI	GDGCHC	1 cut(s)	791
SetI	ASST	6 cut(s)	231, 323, 460, 536, 655, 757
SfaNI	GCATC	1 cut(s)	300
Sfr303I	CCGCGG	1 cut(s)	136
SfuI	TTCGAA	1 cut(s)	96
SgrBI	CCGCGG	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	579
SsiI	CCGC	2 cut(s)	133, 135
SspI	AATATT	1 cut(s)	812
SspMI	CTAG	1 cut(s)	675
StyD4I	CCNGG	1 cut(s)	713
StyI	CCWWGG	1 cut(s)	801
TaaI	ACNGT	2 cut(s)	452, 647
TaiI	ACGT	2 cut(s)	536, 655
TaqI	TCGA	5 cut(s)	96, 326, 357, 416, 777
TaqII	GACCGA	1 cut(s)	94
TatI	WGTACW	2 cut(s)	153, 757
TauI	GCSGC	2 cut(s)	135, 138
TfiI	GAWTC	1 cut(s)	587
Tru1I	TTAA	3 cut(s)	246, 471, 744
Tru9I	TTAA	3 cut(s)	246, 471, 744
TscAI	CASTG	3 cut(s)	218, 443, 457
TspDTI	ATGAA	3 cut(s)	17, 140, 344
TspRI	CASTG	3 cut(s)	218, 443, 457
VneI	GTGCAC	1 cut(s)	787
XcmI	CCANNNNNNNNNTGG	1 cut(s)	218
XmnI	GAANNNNTTC	1 cut(s)	322
XspI	CTAG	1 cut(s)	675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.