Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002518

Physical Location & Seq

Genomic Coordinates Forward (+)

12430522 .. 12430734

Gene Structure 213 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47513

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGTGGTGCATCACATGCTAGCTGAAACAATGCCAATAGTCGCCCATGGGGGTGTGTGGGGAGCACTACTTGGTGCGTGCCGTATCCATAAGAAACCCGACATAGCTCAAATTGCTGCCGCCCATCTATTTGAGCTTGAACCTAATAATATTGGAAACTATGTGATGCTCCCTAACGTATATGCATCAGCAGGAAGGTGGGGTGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

70

Amino Acids

7.57

Weight (kDa)

6.48

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	32 - 70	1.4e-11	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09190
fragaria_vesca	FvH4_1g08040
malus_domestica	MD02G1085000.v1.1
prunus_persica	Prupe.7G204600_v2.0.a1
pyrus_communis	pycom02g06780 pycom02g20400
rosa_chinensis	RchiOBHm_Chr1g0349371 RchiOBHm_Chr1g0365421 RchiOBHm_Chr2g0094071 RchiOBHm_Chr2g0100501 RchiOBHm_Chr2g0145241 RchiOBHm_Chr5g0027681
rosa_laevigata	RLG00000016453 RLG00000016978 RLG00000028565
rosa_multiflora	Rmu_sc0000528.1_g000021 Rmu_sc0001942.1_g000078 Rmu_sc0001989.1_g000005 Rmu_sc0001989.1_g000006 Rmu_sc0002834.1_g000001 Rmu_sc0010460.1_g000009 Rmu_sc0015757.1_g000001 Rmu_sc0023774.1_g000001 Rmu_ssc0000469.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065660 Rroxscaffold_2G00147500
rosa_rugosa	Rorug01G0191200 Rorug01G0245800 Rorug01G0404500 Rorug02G0040700 Rorug02G0042900 Rorug02G0088700 Rorug02G0306900 Rorug02G0425200 RorugPtG0000800
rosa_samantha	Rh1BG121500 Rh2BG141500 Rh2BG455200 Rh2CG090800 Rh2CG143700 Rh2DG465200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	120
AgsI	TTSAA	1 cut(s)	140
AluBI	AGCT	3 cut(s)	23, 107, 136
AluI	AGCT	3 cut(s)	23, 107, 136
Alw21I	GWGCWC	1 cut(s)	67
ApeKI	GCWGC	1 cut(s)	116
AsuNHI	GCTAGC	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	1 cut(s)	132
BceAI	ACGGC	1 cut(s)	66
BciVI	GTATCC	1 cut(s)	95
BfaI	CTAG	1 cut(s)	20
BfuI	GTATCC	1 cut(s)	95
BisI	GCNGC	2 cut(s)	117, 120
BlsI	GCNGC	2 cut(s)	118, 121
BmsI	GCATC	3 cut(s)	19, 156, 194
BmtI	GCTAGC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	46
BseDI	CCNNGG	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp19I	CCATGG	1 cut(s)	46
BspACI	CCGC	1 cut(s)	120
BspOI	GCTAGC	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	46
BssT1I	CCWWGG	1 cut(s)	46
BstAPI	GCANNNNNTGC	1 cut(s)	16
BstC8I	GCNNGC	2 cut(s)	21, 79
BstDSI	CCRYGG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 113
BstNSI	RCATGY	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	103
BsuI	GTATCC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	46
Cac8I	GCNNGC	2 cut(s)	21, 79
CviAII	CATG	2 cut(s)	16, 47
CviJI	RGCY	3 cut(s)	23, 107, 136
CviKI_1	RGCY	3 cut(s)	23, 107, 136
Eco130I	CCWWGG	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	46
EcoT22I	ATGCAT	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	46
FaeI	CATG	2 cut(s)	19, 50
FaiI	YATR	7 cut(s)	17, 48, 90, 104, 162, 181, 183
FatI	CATG	2 cut(s)	15, 46
Fnu4HI	GCNGC	2 cut(s)	117, 120
Fsp4HI	GCNGC	2 cut(s)	117, 120
FspBI	CTAG	1 cut(s)	20
GluI	GCNGC	2 cut(s)	117, 120
Hin1II	CATG	2 cut(s)	19, 50
HpyAV	CCTTC	1 cut(s)	189
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	2 cut(s)	10, 185
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 113
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	2 cut(s)	19, 50
LmnI	GCTCC	2 cut(s)	62, 174
LpnPI	CCDG	1 cut(s)	177
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	3 cut(s)	19, 156, 194
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	1 cut(s)	177
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	1 cut(s)	111
Mph1103I	ATGCAT	1 cut(s)	187
MslI	CAYNNNNRTG	1 cut(s)	51
MwoI	GCNNNNNNNGC	2 cut(s)	16, 113
NcoI	CCATGG	1 cut(s)	46
NheI	GCTAGC	1 cut(s)	19
NlaIII	CATG	2 cut(s)	19, 50
NsiI	ATGCAT	1 cut(s)	187
NspI	RCATGY	1 cut(s)	19
PkrI	GCNGC	2 cut(s)	118, 121
RseI	CAYNNNNRTG	1 cut(s)	51
SatI	GCNGC	2 cut(s)	117, 120
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	6 cut(s)	25, 109, 138, 145, 180, 200
SfaNI	GCATC	3 cut(s)	19, 156, 194
SgeI	CNNG	8 cut(s)	28, 32, 59, 83, 90, 110, 149, 204
SmiMI	CAYNNNNRTG	1 cut(s)	51
Sse9I	AATT	1 cut(s)	111
SsiI	CCGC	1 cut(s)	120
SspI	AATATT	1 cut(s)	151
SspMI	CTAG	1 cut(s)	20
StyI	CCWWGG	1 cut(s)	46
TaiI	ACGT	1 cut(s)	180
TasI	AATT	1 cut(s)	111
TauI	GCSGC	1 cut(s)	122
TseI	GCWGC	1 cut(s)	116
XceI	RCATGY	1 cut(s)	19
XspI	CTAG	1 cut(s)	20
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.